{"id":"https://openalex.org/W3023019135","doi":"https://doi.org/10.1093/database/baaa028","title":"Community curation in PomBase: enabling fission yeast experts to provide detailed, standardized, sharable annotation from research publications","display_name":"Community curation in PomBase: enabling fission yeast experts to provide detailed, standardized, sharable annotation from research publications","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3023019135","doi":"https://doi.org/10.1093/database/baaa028","mag":"3023019135","pmid":"https://pubmed.ncbi.nlm.nih.gov/32353878"},"language":"en","primary_location":{"id":"doi:10.1093/database/baaa028","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaa028","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa028/33149912/baaa028.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa028/33149912/baaa028.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021204441","display_name":"Antonia Lock","orcid":"https://orcid.org/0000-0003-1179-5999"},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Antonia Lock","raw_affiliation_strings":["Department of Genetics, Evolution and Environment, University College London, Gower street, London WC1E 6BT, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Evolution and Environment, University College London, Gower street, London WC1E 6BT, UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024953209","display_name":"Midori A. Harris","orcid":"https://orcid.org/0000-0003-4148-4606"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Midori A Harris","raw_affiliation_strings":["Department of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge CB2 1GA, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge CB2 1GA, UK","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034311504","display_name":"Kim Rutherford","orcid":"https://orcid.org/0000-0001-6277-726X"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Kim Rutherford","raw_affiliation_strings":["Department of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge CB2 1GA, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge CB2 1GA, UK","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001650498","display_name":"Jacqueline Hayles","orcid":"https://orcid.org/0000-0002-8599-8206"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jacqueline Hayles","raw_affiliation_strings":["Department of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge CB2 1GA, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge CB2 1GA, UK","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053534930","display_name":"Valerie Wood","orcid":"https://orcid.org/0000-0001-6330-7526"},"institutions":[{"id":"https://openalex.org/I2801081054","display_name":"The Francis Crick Institute","ror":"https://ror.org/04tnbqb63","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2801081054"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Valerie Wood","raw_affiliation_strings":["Cell Cycle Laboratory, The Francis Crick Institute, Midland Rd, London NW1 1AT, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cell Cycle Laboratory, The Francis Crick Institute, Midland Rd, London NW1 1AT, UK","institution_ids":["https://openalex.org/I2801081054"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5053534930"],"corresponding_institution_ids":["https://openalex.org/I2801081054"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":1.4791,"has_fulltext":true,"cited_by_count":28,"citation_normalized_percentile":{"value":0.81899629,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"2020","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9796000123023987,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9736999869346619,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.9129378795623779},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6884246468544006},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5556007623672485},{"id":"https://openalex.org/keywords/value","display_name":"Value (mathematics)","score":0.44836071133613586},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.4472540020942688},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.42851388454437256},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.42452171444892883},{"id":"https://openalex.org/keywords/knowledge-management","display_name":"Knowledge management","score":0.4056931436061859},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.18719089031219482}],"concepts":[{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.9129378795623779},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6884246468544006},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5556007623672485},{"id":"https://openalex.org/C2776291640","wikidata":"https://www.wikidata.org/wiki/Q2912517","display_name":"Value (mathematics)","level":2,"score":0.44836071133613586},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.4472540020942688},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.42851388454437256},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.42452171444892883},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.4056931436061859},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.18719089031219482},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000079803","descriptor_name":"Data Management","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000079803","descriptor_name":"Data Management","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000079803","descriptor_name":"Data Management","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012568","descriptor_name":"Schizosaccharomyces","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012568","descriptor_name":"Schizosaccharomyces","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012568","descriptor_name":"Schizosaccharomyces","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/database/baaa028","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaa028","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa028/33149912/baaa028.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:32353878","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32353878","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:figshare.com:article/13214141","is_oa":true,"landing_page_url":"https://figshare.com/articles/journal_contribution/Community_curation_in_PomBase_enabling_fission_yeast_experts_to_provide_detailed_standardized_sharable_annotation_from_research_publications_/13214141","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:7192550","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7192550","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"},{"id":"pmh:oai:www.repository.cam.ac.uk:1810/303856","is_oa":false,"landing_page_url":"https://www.repository.cam.ac.uk/handle/1810/303856","pdf_url":null,"source":{"id":"https://openalex.org/S4306401777","display_name":"Apollo (University of Cambridge)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I241749","host_organization_name":"University of Cambridge","host_organization_lineage":["https://openalex.org/I241749"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"doi:10.17863/cam.50938","is_oa":true,"landing_page_url":"https://doi.org/10.17863/cam.50938","pdf_url":null,"source":{"id":"https://openalex.org/S7407050737","display_name":"Apollo","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"JournalArticle"}],"best_oa_location":{"id":"doi:10.1093/database/baaa028","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaa028","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa028/33149912/baaa028.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G8180126548","display_name":null,"funder_award_id":"104967/Z/14/Z","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"}],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3023019135.pdf","grobid_xml":"https://content.openalex.org/works/W3023019135.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W1481908410","https://openalex.org/W1999615477","https://openalex.org/W2091940856","https://openalex.org/W2099685256","https://openalex.org/W2102983252","https://openalex.org/W2103017472","https://openalex.org/W2107728961","https://openalex.org/W2125920251","https://openalex.org/W2148901089","https://openalex.org/W2162899969","https://openalex.org/W2163878689","https://openalex.org/W2302501749","https://openalex.org/W2362509703","https://openalex.org/W2460275365","https://openalex.org/W2496693855","https://openalex.org/W2567393658","https://openalex.org/W2765384588","https://openalex.org/W2773787581","https://openalex.org/W2794072829","https://openalex.org/W2896319347","https://openalex.org/W2900353268","https://openalex.org/W2901540525","https://openalex.org/W2903744671","https://openalex.org/W2913143675","https://openalex.org/W2917858269","https://openalex.org/W2950595506","https://openalex.org/W2992521260","https://openalex.org/W2996657600","https://openalex.org/W3023695158","https://openalex.org/W4244393794","https://openalex.org/W6770574483"],"related_works":["https://openalex.org/W2392768766","https://openalex.org/W2058118494","https://openalex.org/W2095118173","https://openalex.org/W2382021449","https://openalex.org/W2104269053","https://openalex.org/W2106424170","https://openalex.org/W2501188010","https://openalex.org/W4299935056","https://openalex.org/W2768810474","https://openalex.org/W2082577974"],"abstract_inverted_index":{"Maximizing":[0],"the":[1,16,79,90,102,108,134],"impact":[2],"and":[3,31,88,101,113,120,129,144],"value":[4,137],"of":[5,18,51,81],"scientific":[6],"research":[7],"requires":[8],"efficient":[9,32],"knowledge":[10,56,127],"distribution,":[11],"which":[12,124],"increasingly":[13],"depends":[14],"on":[15],"integration":[17,28,128],"standardized":[19],"published":[20],"data":[21,27,52,74],"into":[22],"online":[23,63],"databases.":[24],"To":[25],"make":[26],"more":[29],"comprehensive":[30],"for":[33],"fission":[34],"yeast":[35],"research,":[36],"PomBase":[37],"has":[38],"pioneered":[39],"a":[40],"community":[41,98],"curation":[42,64,99],"effort":[43],"that":[44,66],"engages":[45],"publication":[46,142],"authors":[47,143],"directly":[48],"in":[49],"FAIR-sharing":[50],"representing":[53],"detailed":[54,72],"biological":[55],"from":[57,107,139],"hypothesis-driven":[58],"experiments.":[59],"Canto,":[60],"an":[61],"intuitive":[62],"tool":[65],"enables":[67],"biologists":[68],"to":[69,117],"describe":[70],"their":[71],"functional":[73],"using":[75],"shared":[76],"ontologies,":[77],"forms":[78],"core":[80],"PomBase's":[82],"system.":[83],"With":[84],"8":[85],"years'":[86],"experience,":[87],"as":[89,131,133],"author":[91],"response":[92],"rate":[93],"reaches":[94],"50%,":[95],"we":[96,104,115],"review":[97],"progress":[100],"insights":[103],"have":[105],"gained":[106],"project.":[109],"We":[110],"highlight":[111],"incentives":[112],"nudges":[114],"deploy":[116],"maximize":[118],"participation,":[119],"summarize":[121],"project":[122],"outcomes,":[123],"include":[125],"increased":[126],"dissemination":[130],"well":[132],"unanticipated":[135],"added":[136],"arising":[138],"co-curation":[140],"by":[141],"professional":[145],"curators.":[146]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":3}],"updated_date":"2026-07-01T08:55:40.977307","created_date":"2025-10-10T00:00:00"}