{"id":"https://openalex.org/W3023417367","doi":"https://doi.org/10.1093/database/baaa026","title":"UPCLASS: a deep learning-based classifier for UniProtKB entry publications","display_name":"UPCLASS: a deep learning-based classifier for UniProtKB entry publications","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3023417367","doi":"https://doi.org/10.1093/database/baaa026","mag":"3023417367","pmid":"https://pubmed.ncbi.nlm.nih.gov/32367111"},"language":"en","primary_location":{"id":"doi:10.1093/database/baaa026","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaa026","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa026/33165294/baaa026.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa026/33165294/baaa026.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042070839","display_name":"Douglas Teodoro","orcid":"https://orcid.org/0000-0001-6238-4503"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I173439891","display_name":"HES-SO University of Applied Sciences and Arts Western Switzerland","ror":"https://ror.org/01xkakk17","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Douglas Teodoro","raw_affiliation_strings":["Geneva School of Business Administration, CH-1227, University of Applied Sciences and Arts Western Switzerland, HES-SO, Geneva, Switzerland","Text Mining Group, Rue Michel-Servet 1, CH-1206, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Geneva School of Business Administration, CH-1227, University of Applied Sciences and Arts Western Switzerland, HES-SO, Geneva, Switzerland","institution_ids":["https://openalex.org/I173439891"]},{"raw_affiliation_string":"Text Mining Group, Rue Michel-Servet 1, CH-1206, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083967421","display_name":"Julien Knafou","orcid":"https://orcid.org/0000-0002-9086-4982"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I173439891","display_name":"HES-SO University of Applied Sciences and Arts Western Switzerland","ror":"https://ror.org/01xkakk17","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Julien Knafou","raw_affiliation_strings":["Geneva School of Business Administration, CH-1227, University of Applied Sciences and Arts Western Switzerland, HES-SO, Geneva, Switzerland","Text Mining Group, Rue Michel-Servet 1, CH-1206, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Geneva School of Business Administration, CH-1227, University of Applied Sciences and Arts Western Switzerland, HES-SO, Geneva, Switzerland","institution_ids":["https://openalex.org/I173439891"]},{"raw_affiliation_string":"Text Mining Group, Rue Michel-Servet 1, CH-1206, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069421871","display_name":"Nona Naderi","orcid":"https://orcid.org/0000-0002-1272-7640"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I173439891","display_name":"HES-SO University of Applied Sciences and Arts Western Switzerland","ror":"https://ror.org/01xkakk17","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Nona Naderi","raw_affiliation_strings":["Geneva School of Business Administration, CH-1227, University of Applied Sciences and Arts Western Switzerland, HES-SO, Geneva, Switzerland","Text Mining Group, Rue Michel-Servet 1, CH-1206, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Geneva School of Business Administration, CH-1227, University of Applied Sciences and Arts Western Switzerland, HES-SO, Geneva, Switzerland","institution_ids":["https://openalex.org/I173439891"]},{"raw_affiliation_string":"Text Mining Group, Rue Michel-Servet 1, CH-1206, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017034341","display_name":"Emilie Pasche","orcid":"https://orcid.org/0000-0002-9118-5762"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I173439891","display_name":"HES-SO University of Applied Sciences and Arts Western Switzerland","ror":"https://ror.org/01xkakk17","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Emilie Pasche","raw_affiliation_strings":["Geneva School of Business Administration, CH-1227, University of Applied Sciences and Arts Western Switzerland, HES-SO, Geneva, Switzerland","Text Mining Group, Rue Michel-Servet 1, CH-1206, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Geneva School of Business Administration, CH-1227, University of Applied Sciences and Arts Western Switzerland, HES-SO, Geneva, Switzerland","institution_ids":["https://openalex.org/I173439891"]},{"raw_affiliation_string":"Text Mining Group, Rue Michel-Servet 1, CH-1206, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091440467","display_name":"Julien Gobeill","orcid":"https://orcid.org/0000-0001-9809-7741"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I173439891","display_name":"HES-SO University of Applied Sciences and Arts Western Switzerland","ror":"https://ror.org/01xkakk17","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Julien Gobeill","raw_affiliation_strings":["Geneva School of Business Administration, CH-1227, University of Applied Sciences and Arts Western Switzerland, HES-SO, Geneva, Switzerland","Text Mining Group, Rue Michel-Servet 1, CH-1206, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Geneva School of Business Administration, CH-1227, University of Applied Sciences and Arts Western Switzerland, HES-SO, Geneva, Switzerland","institution_ids":["https://openalex.org/I173439891"]},{"raw_affiliation_string":"Text Mining Group, Rue Michel-Servet 1, CH-1206, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001355963","display_name":"Cecilia N. Arighi","orcid":"https://orcid.org/0000-0002-0803-4817"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cecilia N Arighi","raw_affiliation_strings":["Center of Bioinformatics and Computational Biology, 15 Innovation Way, 19711, Department of Computer and Information Sciences, University of Delaware, Newark, DE, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center of Bioinformatics and Computational Biology, 15 Innovation Way, 19711, Department of Computer and Information Sciences, University of Delaware, Newark, DE, USA","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042384742","display_name":"Patrick Ruch","orcid":"https://orcid.org/0000-0002-3374-2962"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I173439891","display_name":"HES-SO University of Applied Sciences and Arts Western Switzerland","ror":"https://ror.org/01xkakk17","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Patrick Ruch","raw_affiliation_strings":["Geneva School of Business Administration, CH-1227, University of Applied Sciences and Arts Western Switzerland, HES-SO, Geneva, Switzerland","Text Mining Group, Rue Michel-Servet 1, CH-1206, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Geneva School of Business Administration, CH-1227, University of Applied Sciences and Arts Western Switzerland, HES-SO, Geneva, Switzerland","institution_ids":["https://openalex.org/I173439891"]},{"raw_affiliation_string":"Text Mining Group, Rue Michel-Servet 1, CH-1206, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5042070839"],"corresponding_institution_ids":["https://openalex.org/I12708293","https://openalex.org/I173439891"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":1.0881,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.82480948,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"2020","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9840999841690063,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.9714807271957397},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7528127431869507},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7345263957977295},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.6249998807907104},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.6138572692871094},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.590175449848175},{"id":"https://openalex.org/keywords/categorization","display_name":"Categorization","score":0.5792679190635681},{"id":"https://openalex.org/keywords/accession","display_name":"Accession","score":0.5340743064880371},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.5255393385887146},{"id":"https://openalex.org/keywords/f1-score","display_name":"F1 score","score":0.4908512234687805},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.44956207275390625},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.4449816346168518},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3589624762535095},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09173515439033508}],"concepts":[{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.9714807271957397},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7528127431869507},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7345263957977295},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.6249998807907104},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.6138572692871094},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.590175449848175},{"id":"https://openalex.org/C94124525","wikidata":"https://www.wikidata.org/wiki/Q912550","display_name":"Categorization","level":2,"score":0.5792679190635681},{"id":"https://openalex.org/C2778221078","wikidata":"https://www.wikidata.org/wiki/Q567586","display_name":"Accession","level":3,"score":0.5340743064880371},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.5255393385887146},{"id":"https://openalex.org/C148524875","wikidata":"https://www.wikidata.org/wiki/Q6975395","display_name":"F1 score","level":2,"score":0.4908512234687805},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.44956207275390625},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.4449816346168518},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3589624762535095},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09173515439033508},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C2910001868","wikidata":"https://www.wikidata.org/wiki/Q458","display_name":"European union","level":2,"score":0.0},{"id":"https://openalex.org/C105639569","wikidata":"https://www.wikidata.org/wiki/Q582577","display_name":"Economic policy","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/baaa026","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaa026","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa026/33165294/baaa026.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:32367111","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32367111","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:hesso.tind.io:5688","is_oa":false,"landing_page_url":"http://arodes.hes-so.ch/record/5688","pdf_url":null,"source":{"id":"https://openalex.org/S4306402432","display_name":"ArODES (HES-SO (https://www.hes-so.ch/))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210088449","host_organization_name":"HES-SO Gen\u00e8ve","host_organization_lineage":["https://openalex.org/I4210088449"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://arodes.hes-so.ch/record/5688","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:7198315","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7198315","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baaa026","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaa026","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa026/33165294/baaa026.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3023417367.pdf"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1993220166","https://openalex.org/W2062124658","https://openalex.org/W2096951189","https://openalex.org/W2127546476","https://openalex.org/W2250539671","https://openalex.org/W2405884322","https://openalex.org/W2417029388","https://openalex.org/W2460275365","https://openalex.org/W2564387948","https://openalex.org/W2566523535","https://openalex.org/W2613831280","https://openalex.org/W2735364069","https://openalex.org/W2739028090","https://openalex.org/W2754106318","https://openalex.org/W2786738307","https://openalex.org/W2787247269","https://openalex.org/W2789889445","https://openalex.org/W2887157521","https://openalex.org/W2887377515","https://openalex.org/W2896457183","https://openalex.org/W2900758626","https://openalex.org/W2919115771","https://openalex.org/W2933436187","https://openalex.org/W2941179688","https://openalex.org/W2952894920","https://openalex.org/W2964023798","https://openalex.org/W3136918052","https://openalex.org/W4238634189","https://openalex.org/W4244393794","https://openalex.org/W6636510571","https://openalex.org/W6648516887","https://openalex.org/W6674520403","https://openalex.org/W6737381974","https://openalex.org/W6748563885","https://openalex.org/W6748634344","https://openalex.org/W6754297074","https://openalex.org/W6756115502"],"related_works":["https://openalex.org/W24553703","https://openalex.org/W2102027645","https://openalex.org/W2107785922","https://openalex.org/W2059359052","https://openalex.org/W2035528219","https://openalex.org/W2402478170","https://openalex.org/W2946410450","https://openalex.org/W2999847357","https://openalex.org/W2901823680","https://openalex.org/W2100751507"],"abstract_inverted_index":{"In":[0],"the":[1,27,70,76,95,99,107,117,140,189,201],"UniProt":[2],"Knowledgebase":[3],"(UniProtKB),":[4],"publications":[5,55,68],"providing":[6],"evidence":[7,96,115],"for":[8,98,116,130,213,216],"a":[9,35,47,103,146,152,197,209,217],"specific":[10],"protein":[11,118,218],"annotation":[12,72],"entry":[13],"are":[14],"organized":[15],"across":[16],"different":[17,90,127],"categories,":[18],"such":[19,180],"as":[20],"function,":[21],"interaction":[22],"and":[23,85,112,133,151,164,172,203],"expression,":[24],"based":[25,160],"on":[26,161],"type":[28],"of":[29,38,66,139,149,155,200],"data":[30],"they":[31],"contain.":[32],"To":[33],"provide":[34],"systematic":[36],"way":[37],"categorizing":[39,67],"computationally":[40,190],"mapped":[41,191],"bibliographies":[42],"in":[43,193],"UniProt,":[44],"we":[45,121],"investigate":[46],"convolutional":[48],"neural":[49],"network":[50],"(CNN)":[51],"model":[52,104,144],"to":[53,60,94,125,136,170,186,206],"classify":[54],"with":[56,82,89],"accession":[57,71,132],"annotations":[58],"according":[59,93],"UniProtKB":[61],"categories.":[62],"The":[63,142],"main":[64],"challenge":[65],"at":[69],"level":[73],"is":[74,211],"that":[75,105,179],"same":[77],"publication":[78,210],"can":[79],"be":[80,87,184],"annotated":[81],"multiple":[83],"proteins":[84],"thus":[86],"associated":[88],"category":[91],"sets":[92,129],"provided":[97],"protein.":[100],"We":[101,177],"propose":[102],"divides":[106],"document":[108],"into":[109],"parts":[110,124],"containing":[111,114],"not":[113],"annotation.":[119],"Then,":[120],"use":[122],"these":[123],"create":[126],"feature":[128],"each":[131],"feed":[134],"them":[135],"separate":[137],"layers":[138],"network.":[141],"CNN":[143],"achieved":[145],"micro":[147],"F1-score":[148,154],"0.72":[150],"macro":[153],"0.62,":[156],"outperforming":[157],"baseline":[158],"models":[159],"logistic":[162],"regression":[163],"support":[165],"vector":[166],"machine":[167],"by":[168],"up":[169],"22":[171],"18":[173],"percentage":[174],"points,":[175],"respectively.":[176],"believe":[178],"an":[181],"approach":[182],"could":[183],"used":[185],"systematically":[187],"categorize":[188],"bibliography":[192],"UniProtKB,":[194],"which":[195],"represents":[196],"significant":[198],"set":[199],"publications,":[202],"help":[204],"curators":[205],"decide":[207],"whether":[208],"relevant":[212],"further":[214],"curation":[215],"accession.":[219],"Database":[220],"URL:":[221],"https://goldorak.hesge.ch/bioexpclass/upclass/.":[222]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":5},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1}],"updated_date":"2026-05-22T06:13:13.366637","created_date":"2025-10-10T00:00:00"}
