{"id":"https://openalex.org/W3017130159","doi":"https://doi.org/10.1093/database/baaa024","title":"Integrating image caption information into biomedical document classification in support of biocuration","display_name":"Integrating image caption information into biomedical document classification in support of biocuration","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3017130159","doi":"https://doi.org/10.1093/database/baaa024","mag":"3017130159","pmid":"https://pubmed.ncbi.nlm.nih.gov/32294192"},"language":"en","primary_location":{"id":"doi:10.1093/database/baaa024","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaa024","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa024/33047414/baaa024.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa024/33047414/baaa024.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029696274","display_name":"Xiangying Jiang","orcid":null},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Xiangying Jiang","raw_affiliation_strings":["The Computational Biomedicine and Machine Learning Lab, Department of Computer & Information Sciences, University of Delaware, 18 Amstel Ave, Newark, DE 19716, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Computational Biomedicine and Machine Learning Lab, Department of Computer & Information Sciences, University of Delaware, 18 Amstel Ave, Newark, DE 19716, USA","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067099783","display_name":"Pengyuan Li","orcid":"https://orcid.org/0000-0002-8205-7611"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pengyuan Li","raw_affiliation_strings":["The Computational Biomedicine and Machine Learning Lab, Department of Computer & Information Sciences, University of Delaware, 18 Amstel Ave, Newark, DE 19716, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Computational Biomedicine and Machine Learning Lab, Department of Computer & Information Sciences, University of Delaware, 18 Amstel Ave, Newark, DE 19716, USA","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038370465","display_name":"James A. Kadin","orcid":"https://orcid.org/0000-0002-7644-3743"},"institutions":[{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James Kadin","raw_affiliation_strings":["The Jackson Laboratory, 600 Main Street, Bar Harbor, ME, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Jackson Laboratory, 600 Main Street, Bar Harbor, ME, USA","institution_ids":["https://openalex.org/I4210115256"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016349593","display_name":"Judith A. Blake","orcid":"https://orcid.org/0000-0001-8522-334X"},"institutions":[{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Judith A Blake","raw_affiliation_strings":["The Jackson Laboratory, 600 Main Street, Bar Harbor, ME, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Jackson Laboratory, 600 Main Street, Bar Harbor, ME, USA","institution_ids":["https://openalex.org/I4210115256"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070528752","display_name":"Martin Ringwald","orcid":"https://orcid.org/0000-0002-5696-5421"},"institutions":[{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Martin Ringwald","raw_affiliation_strings":["The Jackson Laboratory, 600 Main Street, Bar Harbor, ME, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Jackson Laboratory, 600 Main Street, Bar Harbor, ME, USA","institution_ids":["https://openalex.org/I4210115256"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043310715","display_name":"Hagit Shatkay","orcid":"https://orcid.org/0000-0001-6953-3970"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hagit Shatkay","raw_affiliation_strings":["The Computational Biomedicine and Machine Learning Lab, Department of Computer & Information Sciences, University of Delaware, 18 Amstel Ave, Newark, DE 19716, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Computational Biomedicine and Machine Learning Lab, Department of Computer & Information Sciences, University of Delaware, 18 Amstel Ave, Newark, DE 19716, USA","institution_ids":["https://openalex.org/I86501945"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5029696274"],"corresponding_institution_ids":["https://openalex.org/I86501945"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.9764,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.7378888,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":99},"biblio":{"volume":"2020","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8508999943733215,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8508999943733215,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.07980000227689743,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11714","display_name":"Multimodal Machine Learning Applications","score":0.008999999612569809,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7260807156562805},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6895841360092163},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.6274312734603882},{"id":"https://openalex.org/keywords/document-classification","display_name":"Document classification","score":0.6238440275192261},{"id":"https://openalex.org/keywords/precision-and-recall","display_name":"Precision and recall","score":0.4988524913787842},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.4980316162109375},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.4660787284374237},{"id":"https://openalex.org/keywords/classification-scheme","display_name":"Classification scheme","score":0.45883482694625854},{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.44317513704299927},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.4318027198314667},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.36677271127700806},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3632936477661133},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2868182063102722},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.1846807897090912},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08505141735076904}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7260807156562805},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6895841360092163},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.6274312734603882},{"id":"https://openalex.org/C2780479914","wikidata":"https://www.wikidata.org/wiki/Q302088","display_name":"Document classification","level":2,"score":0.6238440275192261},{"id":"https://openalex.org/C81669768","wikidata":"https://www.wikidata.org/wiki/Q2359161","display_name":"Precision and recall","level":2,"score":0.4988524913787842},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.4980316162109375},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.4660787284374237},{"id":"https://openalex.org/C13460635","wikidata":"https://www.wikidata.org/wiki/Q85753676","display_name":"Classification scheme","level":2,"score":0.45883482694625854},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.44317513704299927},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.4318027198314667},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.36677271127700806},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3632936477661133},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2868182063102722},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.1846807897090912},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08505141735076904},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/baaa024","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaa024","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa024/33047414/baaa024.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:32294192","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32294192","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:mouseion.jax.org:stfb2020-1069","is_oa":true,"landing_page_url":"https://mouseion.jax.org/stfb2020/69","pdf_url":null,"source":{"id":"https://openalex.org/S4377196421","display_name":"The Mouseion at the JAXlibrary (Jackson Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210115256","host_organization_name":"Jackson Laboratory","host_organization_lineage":["https://openalex.org/I4210115256"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Research 2020","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:7159034","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7159034","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baaa024","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaa024","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa024/33047414/baaa024.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/8","display_name":"Decent work and economic growth","score":0.6299999952316284}],"awards":[{"id":"https://openalex.org/G2877450027","display_name":null,"funder_award_id":"R01LM011945","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G3510977656","display_name":null,"funder_award_id":"R01 LM012527","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G388989708","display_name":null,"funder_award_id":"U41 HG000330","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G4539539306","display_name":null,"funder_award_id":"U41HG000330","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G4585225537","display_name":null,"funder_award_id":"R01LM012527","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G7485123540","display_name":null,"funder_award_id":"R01 AG025152","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G7842637100","display_name":null,"funder_award_id":"P41 HD062499","funder_id":"https://openalex.org/F4320337611","funder_display_name":"Eunice Kennedy Shriver National Institute of Child Health and Human Development"},{"id":"https://openalex.org/G8260017461","display_name":null,"funder_award_id":"R01 LM011945","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337337","display_name":"National Institute on Aging","ror":"https://ror.org/049v75w11"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"},{"id":"https://openalex.org/F4320337611","display_name":"Eunice Kennedy Shriver National Institute of Child Health and Human Development","ror":"https://ror.org/04byxyr05"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W79002519","https://openalex.org/W1964670939","https://openalex.org/W2062707524","https://openalex.org/W2065108361","https://openalex.org/W2071810875","https://openalex.org/W2096777607","https://openalex.org/W2103308144","https://openalex.org/W2119821739","https://openalex.org/W2133525847","https://openalex.org/W2135937947","https://openalex.org/W2148130205","https://openalex.org/W2148696992","https://openalex.org/W2250539671","https://openalex.org/W2493916176","https://openalex.org/W2602583424","https://openalex.org/W2750779823","https://openalex.org/W2789889445","https://openalex.org/W2799796486","https://openalex.org/W2887377515","https://openalex.org/W2888478394","https://openalex.org/W2889645044","https://openalex.org/W2913593516","https://openalex.org/W2933436187","https://openalex.org/W2941179688","https://openalex.org/W2948269756","https://openalex.org/W3145543370","https://openalex.org/W4231934124","https://openalex.org/W4239510810","https://openalex.org/W6603196723","https://openalex.org/W6651939669","https://openalex.org/W6735729596","https://openalex.org/W6748634344","https://openalex.org/W6750776257","https://openalex.org/W6754345737","https://openalex.org/W6754611692","https://openalex.org/W6761764353"],"related_works":["https://openalex.org/W3120732231","https://openalex.org/W2411463128","https://openalex.org/W2146486983","https://openalex.org/W4313035775","https://openalex.org/W2111303602","https://openalex.org/W2951897737","https://openalex.org/W2762474792","https://openalex.org/W2891678595","https://openalex.org/W2772431536","https://openalex.org/W2124450377"],"abstract_inverted_index":{"Gathering":[0],"information":[1,75,106,180,278,298],"from":[2,92,143,151,279],"the":[3,19,57,81,120,169,177,182,191,231,256,261,265],"scientific":[4],"literature":[5,193],"is":[6,14,54,84,126,228,273],"essential":[7],"for":[8,29,118,204,299],"biomedical":[9,46,301],"research,":[10],"as":[11,215,219],"much":[12,50],"knowledge":[13],"conveyed":[15],"through":[16,66],"publications.":[17],"However,":[18],"large":[20,114,163],"and":[21,35,153,157,237,249,286,304],"rapidly":[22],"increasing":[23],"publication":[24],"rate":[25],"makes":[26],"it":[27,140],"impractical":[28],"researchers":[30],"to":[31,40,72,80,102,108,148,283],"quickly":[32],"identify":[33,73,103,198],"all":[34,176],"only":[36],"those":[37,149],"documents":[38,77,212],"related":[39],"their":[41],"interest.":[42,51],"As":[43,188],"such,":[44],"automated":[45],"document":[47,98,227,302],"classification":[48,53,99,122,194,267,303],"attracts":[49],"Such":[52],"critical":[55],"in":[56,146,181,224,264],"curation":[58],"of":[59,70,116,190,209,233],"biological":[60],"databases,":[61],"because":[62],"biocurators":[63],"must":[64],"scan":[65],"a":[67,85,97,109,113,129,162],"vast":[68],"number":[69],"articles":[71],"pertinent":[74],"within":[76],"most":[78],"relevant":[79,107,203],"database.":[82],"This":[83],"slow,":[86],"labor-intensive":[87],"process":[88],"that":[89,201,255,293],"can":[90],"benefit":[91],"effective":[93],"automation.":[94],"We":[95,155],"present":[96],"scheme":[100,131],"aiming":[101],"papers":[104,200],"containing":[105],"specific":[110],"topic,":[111],"among":[112],"collection":[115],"articles,":[117],"supporting":[119,300],"biocuration":[121],"task.":[123,268],"Our":[124,240],"framework":[125,258],"based":[127],"on":[128],"meta-classification":[130],"we":[132,137],"have":[133],"introduced":[134],"before;":[135],"here":[136],"incorporate":[138],"into":[139],"features":[141],"gathered":[142,221],"figure":[144,238],"captions,":[145],"addition":[147],"obtained":[150],"titles":[152,285],"abstracts.":[154],"trained":[156],"tested":[158],"our":[159,270],"classifier":[160,241],"over":[161],"imbalanced":[164],"dataset,":[165],"originally":[166],"curated":[167],"by":[168,230,276],"Gene":[170],"Expression":[171],"Database":[172,306],"(GXD).":[173],"GXD":[174,196,266],"collects":[175],"gene":[178],"expression":[179],"Mouse":[183],"Genome":[184],"Informatics":[185],"(MGI)":[186],"resource.":[187],"part":[189],"MGI":[192],"pipeline,":[195],"curators":[197],"MGI-selected":[199],"are":[202],"GXD.":[205],"The":[206],"dataset":[207],"consists":[208],"~60":[210],"000":[211],"(5469":[213],"labeled":[214],"relevant;":[216],"52":[217],"866":[218],"irrelevant),":[220],"throughout":[222],"2012-2016,":[223],"which":[225],"each":[226],"represented":[229],"text":[232],"its":[234],"title,":[235],"abstract":[236],"captions.":[239],"attains":[242],"precision":[243],"0.698,":[244],"recall":[245],"0.784,":[246],"f-measure":[247],"0.738":[248],"Matthews":[250],"correlation":[251],"coefficient":[252],"0.711,":[253],"demonstrating":[254],"proposed":[257],"effectively":[259],"addresses":[260],"high":[262],"imbalance":[263],"Moreover,":[269],"classifier's":[271],"performance":[272],"significantly":[274],"improved":[275],"utilizing":[277],"image":[280,294],"captions":[281,295],"compared":[282],"using":[284],"abstracts":[287],"alone;":[288],"this":[289],"observation":[290],"clearly":[291],"demonstrates":[292],"provide":[296],"substantial":[297],"curation.":[305],"URL.":[307]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
