{"id":"https://openalex.org/W3017034294","doi":"https://doi.org/10.1093/database/baaa018","title":"Integrated querying and version control of context-specific biological networks","display_name":"Integrated querying and version control of context-specific biological networks","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3017034294","doi":"https://doi.org/10.1093/database/baaa018","mag":"3017034294","pmid":"https://pubmed.ncbi.nlm.nih.gov/32294194"},"language":"en","primary_location":{"id":"doi:10.1093/database/baaa018","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaa018","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa018/33047390/baaa018.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa018/33047390/baaa018.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042713658","display_name":"Tyler Cowman","orcid":null},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Tyler Cowman","raw_affiliation_strings":["Department of Computer and Data Sciences, Case Western Reserve University, Cleveland, OH 44106, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Data Sciences, Case Western Reserve University, Cleveland, OH 44106, USA","institution_ids":["https://openalex.org/I58956616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087032049","display_name":"Mustafa Co\u015fkun","orcid":"https://orcid.org/0000-0003-4805-1416"},"institutions":[{"id":"https://openalex.org/I95293974","display_name":"Abdullah G\u00fcl University","ror":"https://ror.org/00zdyy359","country_code":"TR","type":"education","lineage":["https://openalex.org/I95293974"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Mustafa Co\u015fkun","raw_affiliation_strings":["Department of Computer Engineering, Abdullah G\u00fcl University, Kayseri 38080, Turkey"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Engineering, Abdullah G\u00fcl University, Kayseri 38080, Turkey","institution_ids":["https://openalex.org/I95293974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019202832","display_name":"Ananth Grama","orcid":"https://orcid.org/0000-0002-9378-9244"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ananth Grama","raw_affiliation_strings":["Department of Computer Science, Purdue University, West Lafayette, IN 47906, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Purdue University, West Lafayette, IN 47906, USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035558591","display_name":"Mehmet Koyut\u00fcrk","orcid":"https://orcid.org/0000-0002-3434-5512"},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mehmet Koyut\u00fcrk","raw_affiliation_strings":["Center for Proteomics and Bioinformatics, Case Western Reserve University, Cleveland, OH 44106, USA","Department of Computer and Data Sciences, Case Western Reserve University, Cleveland, OH 44106, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Proteomics and Bioinformatics, Case Western Reserve University, Cleveland, OH 44106, USA","institution_ids":["https://openalex.org/I58956616"]},{"raw_affiliation_string":"Department of Computer and Data Sciences, Case Western Reserve University, Cleveland, OH 44106, USA","institution_ids":["https://openalex.org/I58956616"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5042713658"],"corresponding_institution_ids":["https://openalex.org/I58956616"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.3923,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.60784606,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"2020","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12292","display_name":"Graph Theory and Algorithms","score":0.5782999992370605,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12292","display_name":"Graph Theory and Algorithms","score":0.5782999992370605,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.19920000433921814,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.07689999788999557,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7244731187820435},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6717456579208374},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.49474260210990906},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.44834229350090027},{"id":"https://openalex.org/keywords/control","display_name":"Control (management)","score":0.44654279947280884},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.223294198513031},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15201565623283386}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7244731187820435},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6717456579208374},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.49474260210990906},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.44834229350090027},{"id":"https://openalex.org/C2775924081","wikidata":"https://www.wikidata.org/wiki/Q55608371","display_name":"Control (management)","level":2,"score":0.44654279947280884},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.223294198513031},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15201565623283386},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/baaa018","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaa018","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa018/33047390/baaa018.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:32294194","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32294194","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7158887","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7158887","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baaa018","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaa018","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa018/33047390/baaa018.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1077516249","display_name":null,"funder_award_id":"U01-CA198941","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2217719474","display_name":null,"funder_award_id":"R01-LM012980","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G33047232","display_name":null,"funder_award_id":"R01-LM012980","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G4721182803","display_name":null,"funder_award_id":"U01-CA198941","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G7292600938","display_name":null,"funder_award_id":"R01-LM012980","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3017034294.pdf","grobid_xml":"https://content.openalex.org/works/W3017034294.grobid-xml"},"referenced_works_count":46,"referenced_works":["https://openalex.org/W229097380","https://openalex.org/W1505893511","https://openalex.org/W1784780955","https://openalex.org/W1871096589","https://openalex.org/W1966331733","https://openalex.org/W1974740818","https://openalex.org/W1975449945","https://openalex.org/W1981409633","https://openalex.org/W1994461054","https://openalex.org/W2017987256","https://openalex.org/W2018838463","https://openalex.org/W2026121678","https://openalex.org/W2036568936","https://openalex.org/W2038122249","https://openalex.org/W2050516909","https://openalex.org/W2062533676","https://openalex.org/W2074549773","https://openalex.org/W2117024463","https://openalex.org/W2118446779","https://openalex.org/W2118607021","https://openalex.org/W2119220491","https://openalex.org/W2119412782","https://openalex.org/W2126969584","https://openalex.org/W2144086069","https://openalex.org/W2145100112","https://openalex.org/W2159583324","https://openalex.org/W2159675211","https://openalex.org/W2170282111","https://openalex.org/W2220494873","https://openalex.org/W2223119478","https://openalex.org/W2295275561","https://openalex.org/W2374439971","https://openalex.org/W2469279958","https://openalex.org/W2493031458","https://openalex.org/W2564334132","https://openalex.org/W2569335714","https://openalex.org/W2611624100","https://openalex.org/W2624021832","https://openalex.org/W2739999456","https://openalex.org/W2808223587","https://openalex.org/W2951463786","https://openalex.org/W4230962320","https://openalex.org/W4245562979","https://openalex.org/W6608852248","https://openalex.org/W6649182699","https://openalex.org/W7025124536"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"MOTIVATION:":[0],"Biomolecular":[1],"data":[2,65,103,149,218],"stored":[3],"in":[4,18,129,151,199,219],"public":[5],"databases":[6,69],"is":[7,42,171,230,237],"increasingly":[8],"specialized":[9],"to":[10,44,173],"organisms,":[11],"context/pathology":[12],"and":[13,37,48,55,89,105,135,141,236,241],"tissue":[14],"type,":[15],"potentially":[16],"resulting":[17],"significant":[19,205],"overhead":[20],"for":[21,34,75,86,109,121,190,208],"analyses.":[22],"These":[23],"networks":[24,180],"are":[25],"often":[26],"specializations":[27],"of":[28,61,73,91,101,112,139,161,211,215,223],"generic":[29,142],"interaction":[30],"sets,":[31],"presenting":[32],"opportunities":[33],"reducing":[35,187],"storage":[36,49,88],"computational":[38],"cost.":[39],"Therefore,":[40],"it":[41,170],"desirable":[43],"develop":[45],"effective":[46],"compression":[47],"techniques,":[50,156],"along":[51],"with":[52,153],"efficient":[53,84],"algorithms":[54],"a":[56,98,118,137,220,233],"flexible":[57,175],"query":[58,107,183],"interface":[59],"capable":[60],"operating":[62],"on":[63,178],"compressed":[64,146],"structures.":[66],"Current":[67],"graph":[68],"offer":[70],"varying":[71],"levels":[72],"support":[74,174],"network":[76,126,163,202,217],"integration.":[77],"However,":[78],"these":[79],"solutions":[80],"do":[81],"not":[82],"provide":[83],"methods":[85],"the":[87,131,209],"querying":[90,111,160],"versioned":[92,113],"networks.":[93,116,143],"RESULTS:":[94],"We":[95],"present":[96],"VerTIoN,":[97],"framework":[99],"consisting":[100],"novel":[102],"structures":[104],"associated":[106],"mechanisms":[108],"integrated":[110,201],"context-specific":[114,216],"biological":[115],"As":[117],"use":[119],"case":[120],"our":[122,145],"framework,":[123],"we":[124,157],"study":[125],"proximity":[127],"queries":[128,176],"which":[130],"user":[132],"can":[133],"select":[134],"compose":[136],"combination":[138],"tissue-specific":[140],"Using":[144],"version":[147],"tree":[148],"structure,":[150],"conjunction":[152],"state-of-the-art":[154],"numerical":[155],"demonstrate":[158],"real-time":[159],"large":[162],"databases.":[164],"CONCLUSION:":[165],"Our":[166],"results":[167],"show":[168],"that":[169],"possible":[172],"defined":[177],"heterogeneous":[179],"composed":[181],"at":[182,239],"time":[184,189],"while":[185],"drastically":[186],"response":[188],"multiple":[191],"simultaneous":[192],"queries.":[193],"The":[194],"flexibility":[195],"offered":[196],"by":[197],"VerTIoN":[198,229],"composing":[200],"versions":[203],"opens":[204],"new":[206],"avenues":[207],"utilization":[210],"ever":[212],"increasing":[213],"volume":[214],"broad":[221],"range":[222],"biomedical":[224],"applications.":[225],"AVAILABILITY":[226],"AND":[227],"IMPLEMENTATION:":[228],"implemented":[231],"as":[232],"C++":[234],"library":[235],"available":[238],"http://compbio.case.edu/omics/software/vertion":[240],"https://github.com/tjcowman/vertion.":[242],"CONTACT:":[243],"tyler.cowman@case.edu.":[244]},"counts_by_year":[{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
