{"id":"https://openalex.org/W2792936422","doi":"https://doi.org/10.1093/comnet/cnx052","title":"Proteins across scales through graph partitioning: application to the major peanut allergen Ara h 1","display_name":"Proteins across scales through graph partitioning: application to the major peanut allergen Ara h 1","publication_year":2017,"publication_date":"2017-10-13","ids":{"openalex":"https://openalex.org/W2792936422","doi":"https://doi.org/10.1093/comnet/cnx052","mag":"2792936422"},"language":"en","primary_location":{"id":"doi:10.1093/comnet/cnx052","is_oa":true,"landing_page_url":"https://doi.org/10.1093/comnet/cnx052","pdf_url":"https://academic.oup.com/comnet/article-pdf/6/5/679/26058943/cnx052.pdf","source":{"id":"https://openalex.org/S2531583244","display_name":"Journal of Complex Networks","issn_l":"2051-1310","issn":["2051-1310","2051-1329"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Complex Networks","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/comnet/article-pdf/6/5/679/26058943/cnx052.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101736530","display_name":"Heng Zhang","orcid":"https://orcid.org/0000-0003-1272-6880"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Heng Zhang","raw_affiliation_strings":["Department of Chemistry, Imperial College London, London, UK"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Imperial College London, London, UK","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089495481","display_name":"Jos\u00e9 Domingo Salazar","orcid":null},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 Domingo Salazar","raw_affiliation_strings":["Imperial College London, London, UK"],"affiliations":[{"raw_affiliation_string":"Imperial College London, London, UK","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071259425","display_name":"Sophia N. Yaliraki","orcid":"https://orcid.org/0000-0002-8968-0713"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Sophia N Yaliraki","raw_affiliation_strings":["Department of Chemistry, Imperial College London, London, UK"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Imperial College London, London, UK","institution_ids":["https://openalex.org/I47508984"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5071259425"],"corresponding_institution_ids":["https://openalex.org/I47508984"],"apc_list":{"value":4151,"currency":"USD","value_usd":4151},"apc_paid":{"value":2639,"currency":"EUR","value_usd":2846},"fwci":0.2127,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.55602596,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"6","issue":"5","first_page":"679","last_page":"692"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9878000020980835,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9876999855041504,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6690943837165833},{"id":"https://openalex.org/keywords/a-priori-and-a-posteriori","display_name":"A priori and a posteriori","score":0.5781611800193787},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.565622091293335},{"id":"https://openalex.org/keywords/markov-chain","display_name":"Markov chain","score":0.5615271329879761},{"id":"https://openalex.org/keywords/stability","display_name":"Stability (learning theory)","score":0.4981498718261719},{"id":"https://openalex.org/keywords/gaussian","display_name":"Gaussian","score":0.4276210069656372},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3798239827156067},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37591272592544556},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36163508892059326},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.2807289958000183},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2522444725036621},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.14935633540153503}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6690943837165833},{"id":"https://openalex.org/C75553542","wikidata":"https://www.wikidata.org/wiki/Q178161","display_name":"A priori and a posteriori","level":2,"score":0.5781611800193787},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.565622091293335},{"id":"https://openalex.org/C98763669","wikidata":"https://www.wikidata.org/wiki/Q176645","display_name":"Markov chain","level":2,"score":0.5615271329879761},{"id":"https://openalex.org/C112972136","wikidata":"https://www.wikidata.org/wiki/Q7595718","display_name":"Stability (learning theory)","level":2,"score":0.4981498718261719},{"id":"https://openalex.org/C163716315","wikidata":"https://www.wikidata.org/wiki/Q901177","display_name":"Gaussian","level":2,"score":0.4276210069656372},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3798239827156067},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37591272592544556},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36163508892059326},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.2807289958000183},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2522444725036621},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.14935633540153503},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/comnet/cnx052","is_oa":true,"landing_page_url":"https://doi.org/10.1093/comnet/cnx052","pdf_url":"https://academic.oup.com/comnet/article-pdf/6/5/679/26058943/cnx052.pdf","source":{"id":"https://openalex.org/S2531583244","display_name":"Journal of Complex Networks","issn_l":"2051-1310","issn":["2051-1310","2051-1329"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Complex Networks","raw_type":"journal-article"},{"id":"pmh:oai:spiral.imperial.ac.uk:10044/1/51857","is_oa":true,"landing_page_url":"http://hdl.handle.net/10044/1/51857","pdf_url":null,"source":{"id":"https://openalex.org/S4306401396","display_name":"Spiral (Imperial College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I47508984","host_organization_name":"Imperial College London","host_organization_lineage":["https://openalex.org/I47508984"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"692","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/comnet/cnx052","is_oa":true,"landing_page_url":"https://doi.org/10.1093/comnet/cnx052","pdf_url":"https://academic.oup.com/comnet/article-pdf/6/5/679/26058943/cnx052.pdf","source":{"id":"https://openalex.org/S2531583244","display_name":"Journal of Complex Networks","issn_l":"2051-1310","issn":["2051-1310","2051-1329"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Complex Networks","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","score":0.8299999833106995,"display_name":"Zero hunger"}],"awards":[{"id":"https://openalex.org/G2453345397","display_name":null,"funder_award_id":"EP/N014529/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G7417950124","display_name":"EPSRC Centre for Mathematics of Precision Healthcare","funder_award_id":"EP/N014529/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G889968482","display_name":null,"funder_award_id":"EP/I037180/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2792936422.pdf","grobid_xml":"https://content.openalex.org/works/W2792936422.grobid-xml"},"referenced_works_count":74,"referenced_works":["https://openalex.org/W645613811","https://openalex.org/W1746819321","https://openalex.org/W1806547840","https://openalex.org/W1965978566","https://openalex.org/W1969231606","https://openalex.org/W1971729008","https://openalex.org/W1973314837","https://openalex.org/W1976373237","https://openalex.org/W1978194096","https://openalex.org/W1978825280","https://openalex.org/W1982405838","https://openalex.org/W1987875240","https://openalex.org/W1989587457","https://openalex.org/W1993075901","https://openalex.org/W1995996823","https://openalex.org/W1999206401","https://openalex.org/W2008209917","https://openalex.org/W2009123297","https://openalex.org/W2009133700","https://openalex.org/W2012037212","https://openalex.org/W2015564416","https://openalex.org/W2022205857","https://openalex.org/W2030517878","https://openalex.org/W2036329916","https://openalex.org/W2036604357","https://openalex.org/W2038302435","https://openalex.org/W2044988896","https://openalex.org/W2048411595","https://openalex.org/W2048822589","https://openalex.org/W2058206198","https://openalex.org/W2059087510","https://openalex.org/W2061099285","https://openalex.org/W2065278963","https://openalex.org/W2079208358","https://openalex.org/W2081458261","https://openalex.org/W2084061096","https://openalex.org/W2085278043","https://openalex.org/W2086164560","https://openalex.org/W2088593188","https://openalex.org/W2091226991","https://openalex.org/W2092006899","https://openalex.org/W2092564708","https://openalex.org/W2093221728","https://openalex.org/W2093547815","https://openalex.org/W2098354564","https://openalex.org/W2102023232","https://openalex.org/W2115339329","https://openalex.org/W2126144379","https://openalex.org/W2129070834","https://openalex.org/W2131681506","https://openalex.org/W2132116179","https://openalex.org/W2136088806","https://openalex.org/W2136569070","https://openalex.org/W2139435883","https://openalex.org/W2140831756","https://openalex.org/W2141204732","https://openalex.org/W2141729166","https://openalex.org/W2142134255","https://openalex.org/W2151936673","https://openalex.org/W2157305458","https://openalex.org/W2157982226","https://openalex.org/W2160544821","https://openalex.org/W2269846677","https://openalex.org/W2407736031","https://openalex.org/W2413334978","https://openalex.org/W2470452688","https://openalex.org/W2588605929","https://openalex.org/W2963302977","https://openalex.org/W3099768174","https://openalex.org/W3103789001","https://openalex.org/W4211049957","https://openalex.org/W4211196614","https://openalex.org/W6638253326","https://openalex.org/W6714135042"],"related_works":["https://openalex.org/W4388311650","https://openalex.org/W5922282","https://openalex.org/W1974056099","https://openalex.org/W4245343541","https://openalex.org/W2386077341","https://openalex.org/W563589758","https://openalex.org/W62490179","https://openalex.org/W2954004777","https://openalex.org/W2951102138","https://openalex.org/W1568403290"],"abstract_inverted_index":{"The":[0,103],"analysis":[1],"of":[2,31,36,107,144],"community":[3,37],"structure":[4],"in":[5,121],"complex":[6],"networks":[7],"has":[8],"been":[9,41],"given":[10],"much":[11],"attention":[12],"recently,":[13],"as":[14],"it":[15],"is":[16,63,82],"hoped":[17],"that":[18,92,139,168],"the":[19,28,32,119],"communities":[20],"at":[21],"various":[22],"scales":[23],"can":[24],"affect":[25],"or":[26],"explain":[27],"global":[29],"behaviour":[30],"system.":[33],"A":[34],"plethora":[35],"detection":[38],"algorithms":[39],"have":[40],"proposed,":[42],"insightful":[43],"yet":[44],"often":[45],"restricted":[46],"by":[47],"certain":[48],"inherent":[49],"resolutions.":[50],"Proteins":[51],"are":[52],"multi-scale":[53],"biomolecular":[54],"machines":[55],"with":[56,89,147],"coupled":[57],"structural":[58],"organization":[59],"across":[60],"scales,":[61],"which":[62,81,134],"linked":[64],"to":[65],"their":[66],"function.":[67],"To":[68],"reveal":[69],"this":[70],"organization,":[71],"we":[72,127,162],"applied":[73],"a":[74,108,112,115,122],"recently":[75],"developed":[76],"multi-resolution":[77],"method,":[78],"Markov":[79],"Stability,":[80],"based":[83],"on":[84,131,141],"atomistic":[85],"graph":[86,109],"partitioning,":[87],"along":[88],"theoretical":[90],"mutagenesis":[91],"further":[93,163],"allows":[94],"for":[95],"hot":[96],"spot":[97],"identification":[98],"using":[99],"Gaussian":[100],"process":[101],"regression.":[102],"methodology":[104],"finds":[105],"partitions":[106],"without":[110],"imposing":[111],"particular":[113],"scale":[114],"priori":[116],"and":[117,161],"analyses":[118],"network":[120],"computationally":[123],"efficient":[124],"way.":[125],"Here,":[126],"show":[128],"an":[129],"application":[130],"peanut":[132],"allergenicity,":[133],"despite":[135],"extensive":[136],"experimental":[137],"studies":[138],"focus":[140],"epitopes,":[142],"groups":[143],"atoms":[145],"associated":[146],"allergenic":[148],"reactions,":[149],"remains":[150],"poorly":[151],"understood.":[152],"We":[153],"compare":[154],"our":[155],"results":[156],"against":[157],"available":[158],"experiment":[159],"data,":[160],"predict":[164],"distal":[165],"regulatory":[166],"sites":[167],"may":[169],"significantly":[170],"alter":[171],"protein":[172],"dynamics.":[173]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
