{"id":"https://openalex.org/W2330068922","doi":"https://doi.org/10.1093/comnet/cnv008","title":"Motif profile dynamics and transient species in a Boolean model of mutualistic ecological communities","display_name":"Motif profile dynamics and transient species in a Boolean model of mutualistic ecological communities","publication_year":2015,"publication_date":"2015-03-26","ids":{"openalex":"https://openalex.org/W2330068922","doi":"https://doi.org/10.1093/comnet/cnv008","mag":"2330068922"},"language":"en","primary_location":{"id":"doi:10.1093/comnet/cnv008","is_oa":false,"landing_page_url":"https://doi.org/10.1093/comnet/cnv008","pdf_url":null,"source":{"id":"https://openalex.org/S2531583244","display_name":"Journal of Complex Networks","issn_l":"2051-1310","issn":["2051-1310","2051-1329"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Complex Networks","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018738469","display_name":"Colin Campbell","orcid":"https://orcid.org/0000-0003-3770-7432"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Colin Campbell","raw_affiliation_strings":["Department of Physics, Pennsylvania State University, 152E Davey Laboratory, University Park, PA 16802, USA and Department of Biology, Pennsylvania State University, 208 Mueller Laboratory, University Park, PA 16802, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physics, Pennsylvania State University, 152E Davey Laboratory, University Park, PA 16802, USA and Department of Biology, Pennsylvania State University, 208 Mueller Laboratory, University Park, PA 16802, USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035082420","display_name":"Katriona Shea","orcid":"https://orcid.org/0000-0002-7607-8248"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Katriona Shea","raw_affiliation_strings":["Department of Biology, Pennsylvania State University, 208 Mueller Laboratory, University Park, PA 16802, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Pennsylvania State University, 208 Mueller Laboratory, University Park, PA 16802, USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031482845","display_name":"Suann Yang","orcid":"https://orcid.org/0000-0001-7985-3011"},"institutions":[{"id":"https://openalex.org/I137582240","display_name":"Presbyterian College","ror":"https://ror.org/01s9sxm36","country_code":"US","type":"education","lineage":["https://openalex.org/I137582240"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Suann Yang","raw_affiliation_strings":["Department of Biology, Presbyterian College, Clinton, SC 29325, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Presbyterian College, Clinton, SC 29325, USA","institution_ids":["https://openalex.org/I137582240"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012905268","display_name":"R\u00e9ka Albert","orcid":"https://orcid.org/0000-0002-9485-0828"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R\u00e9ka Albert","raw_affiliation_strings":["Department of Physics, Pennsylvania State University, 152E Davey Laboratory, University Park, PA 16802, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physics, Pennsylvania State University, 152E Davey Laboratory, University Park, PA 16802, USA","institution_ids":["https://openalex.org/I130769515"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4151,"currency":"USD","value_usd":4151},"apc_paid":null,"fwci":1.5193,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.88381231,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"4","issue":"1","first_page":"127","last_page":"139"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10487","display_name":"Plant and animal studies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10487","display_name":"Plant and animal studies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11252","display_name":"Evolutionary Game Theory and Cooperation","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/3312","display_name":"Sociology and Political Science"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.5564791560173035},{"id":"https://openalex.org/keywords/motif","display_name":"Motif (music)","score":0.5376073122024536},{"id":"https://openalex.org/keywords/boolean-network","display_name":"Boolean network","score":0.4203609526157379},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4119471609592438},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2670447528362274},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.10648295283317566},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.07122308015823364}],"concepts":[{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.5564791560173035},{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.5376073122024536},{"id":"https://openalex.org/C134444547","wikidata":"https://www.wikidata.org/wiki/Q585230","display_name":"Boolean network","level":3,"score":0.4203609526157379},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4119471609592438},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2670447528362274},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.10648295283317566},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.07122308015823364},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C187455244","wikidata":"https://www.wikidata.org/wiki/Q942353","display_name":"Boolean function","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/comnet/cnv008","is_oa":false,"landing_page_url":"https://doi.org/10.1093/comnet/cnv008","pdf_url":null,"source":{"id":"https://openalex.org/S2531583244","display_name":"Journal of Complex Networks","issn_l":"2051-1310","issn":["2051-1310","2051-1329"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Complex Networks","raw_type":"journal-article"},{"id":"pmh:oai:open-archive.highwire.org:comnet:4/1/127","is_oa":false,"landing_page_url":"http://comnet.oxfordjournals.org/cgi/content/short/4/1/127","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.5400000214576721,"display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":54,"referenced_works":["https://openalex.org/W84180114","https://openalex.org/W1599207601","https://openalex.org/W1856246780","https://openalex.org/W1875112053","https://openalex.org/W1971985527","https://openalex.org/W1973121909","https://openalex.org/W1977242824","https://openalex.org/W1979612518","https://openalex.org/W1987964015","https://openalex.org/W1994665850","https://openalex.org/W2001155312","https://openalex.org/W2009150640","https://openalex.org/W2016771579","https://openalex.org/W2024238536","https://openalex.org/W2025008161","https://openalex.org/W2029792996","https://openalex.org/W2040045403","https://openalex.org/W2049797028","https://openalex.org/W2054914392","https://openalex.org/W2056909789","https://openalex.org/W2062753834","https://openalex.org/W2067198755","https://openalex.org/W2068014951","https://openalex.org/W2078008084","https://openalex.org/W2086839038","https://openalex.org/W2091818139","https://openalex.org/W2093976918","https://openalex.org/W2095136653","https://openalex.org/W2096871615","https://openalex.org/W2109110326","https://openalex.org/W2110699703","https://openalex.org/W2113618723","https://openalex.org/W2122850002","https://openalex.org/W2130172508","https://openalex.org/W2135858501","https://openalex.org/W2137439980","https://openalex.org/W2138781481","https://openalex.org/W2144482933","https://openalex.org/W2149925941","https://openalex.org/W2152683339","https://openalex.org/W2153624566","https://openalex.org/W2161650500","https://openalex.org/W2163092326","https://openalex.org/W2165779374","https://openalex.org/W2313430569","https://openalex.org/W2328377280","https://openalex.org/W2764432066","https://openalex.org/W3020967061","https://openalex.org/W3037819556","https://openalex.org/W3101999497","https://openalex.org/W4238452917","https://openalex.org/W4246609952","https://openalex.org/W4247006267","https://openalex.org/W6684502699"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W3170299350","https://openalex.org/W2368410102","https://openalex.org/W2368037387","https://openalex.org/W190186656","https://openalex.org/W2902352756","https://openalex.org/W2377079823","https://openalex.org/W2605676258","https://openalex.org/W2599962286","https://openalex.org/W2319582300"],"abstract_inverted_index":{"Network":[0],"motifs":[1,77],"are":[2,73,98,104,123,130],"generally":[3,99],"studied":[4],"to":[5,22,53],"characterize":[6],"the":[7,16,29,41,71,79,83,107,133,142,151],"local":[8],"interaction":[9],"patterns":[10],"of":[11,18,28,31,82,101,127,144],"networks.":[12],"Here,":[13],"we":[14,85],"apply":[15],"concept":[17],"a":[19,23,49,67,157],"motif":[20,153],"profile":[21,154],"synchronous":[24],"Boolean":[25],"network":[26],"model":[27],"formation":[30],"mutualistic":[32,145],"ecological":[33,146],"communities,":[34],"focusing":[35],"on":[36],"four-node":[37],"subgraphs.":[38],"We":[39,137],"consider":[40],"process":[42],"by":[43],"which":[44],"networks":[45,163],"dynamically":[46],"progress":[47],"from":[48],"random":[50],"initial":[51],"condition":[52],"an":[54],"attractor":[55],"(steady":[56],"state":[57],"or":[58],"limit":[59],"cycle,":[60],"collectively":[61],"viewed":[62],"in":[63,78,106,132,141,161],"this":[64],"context":[65,143],"as":[66,76],"stable":[68],"community).":[69],"While":[70],"subgraphs":[72,88,113],"not":[74],"classified":[75],"usual":[80],"sense":[81],"term,":[84],"show":[86],"that":[87,103,129,150],"with":[89,114],"predominantly":[90,115],"stabilizing":[91],"(i.e.":[92,117],"beneficial":[93],"for":[94,119],"species":[95,102,120,128],"persistence)":[96,121],"interactions":[97,122],"composed":[100,126],"present":[105,131],"attractor.":[108],"The":[109],"converse":[110],"also":[111],"holds:":[112],"destabilizing":[116],"detrimental":[118],"more":[124],"commonly":[125],"community":[134],"only":[135],"transiently.":[136],"discuss":[138],"our":[139],"findings":[140],"networks,":[147],"and":[148],"argue":[149],"dynamic":[152,166],"may":[155],"provide":[156],"valuable":[158],"analytical":[159],"tool":[160],"other":[162],"representing":[164],"complex":[165],"systems.":[167]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2017,"cited_by_count":2}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
