{"id":"https://openalex.org/W2617428261","doi":"https://doi.org/10.1093/comjnl/bxx108","title":"Relative Suffix Trees","display_name":"Relative Suffix Trees","publication_year":2017,"publication_date":"2017-10-23","ids":{"openalex":"https://openalex.org/W2617428261","doi":"https://doi.org/10.1093/comjnl/bxx108","mag":"2617428261","pmid":"https://pubmed.ncbi.nlm.nih.gov/29795706"},"language":"en","primary_location":{"id":"doi:10.1093/comjnl/bxx108","is_oa":true,"landing_page_url":"https://doi.org/10.1093/comjnl/bxx108","pdf_url":"https://academic.oup.com/comjnl/article-pdf/61/5/773/24724637/bxx108.pdf","source":{"id":"https://openalex.org/S44643521","display_name":"The Computer Journal","issn_l":"0010-4620","issn":["0010-4620","1460-2067"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Computer Journal","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/comjnl/article-pdf/61/5/773/24724637/bxx108.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010136907","display_name":"Andrea Farruggia","orcid":"https://orcid.org/0000-0001-5350-3873"},"institutions":[{"id":"https://openalex.org/I108290504","display_name":"University of Pisa","ror":"https://ror.org/03ad39j10","country_code":"IT","type":"education","lineage":["https://openalex.org/I108290504"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Andrea Farruggia","raw_affiliation_strings":["Department of Computer Science, University of Pisa, Largo Bruno Pontecorvo 3, 56127 Pisa PI, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Pisa, Largo Bruno Pontecorvo 3, 56127 Pisa PI, Italy","institution_ids":["https://openalex.org/I108290504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013172801","display_name":"Travis Gagie","orcid":"https://orcid.org/0000-0003-3689-327X"},"institutions":[{"id":"https://openalex.org/I4210086090","display_name":"Fraunhofer Chile Research Foundation","ror":"https://ror.org/00h0my365","country_code":"CL","type":"facility","lineage":["https://openalex.org/I4210086090","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I911713783","display_name":"Diego Portales University","ror":"https://ror.org/03gtdcg60","country_code":"CL","type":"education","lineage":["https://openalex.org/I911713783"]}],"countries":["CL"],"is_corresponding":false,"raw_author_name":"Travis Gagie","raw_affiliation_strings":["CeBiB\u2014Center for Biotechnology and Bioengineering, Santiago, Chile","Escuela de Inform\u00e1tica y Telecomunicaciones, Diego Portales University, Ej\u00e9rcito 441, Santiago, Chile"],"affiliations":[{"raw_affiliation_string":"CeBiB\u2014Center for Biotechnology and Bioengineering, Santiago, Chile","institution_ids":["https://openalex.org/I4210086090"]},{"raw_affiliation_string":"Escuela de Inform\u00e1tica y Telecomunicaciones, Diego Portales University, Ej\u00e9rcito 441, Santiago, Chile","institution_ids":["https://openalex.org/I911713783"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080743153","display_name":"Gonzalo Navarro","orcid":"https://orcid.org/0000-0002-2286-741X"},"institutions":[{"id":"https://openalex.org/I69737025","display_name":"University of Chile","ror":"https://ror.org/047gc3g35","country_code":"CL","type":"education","lineage":["https://openalex.org/I69737025"]},{"id":"https://openalex.org/I4210086090","display_name":"Fraunhofer Chile Research Foundation","ror":"https://ror.org/00h0my365","country_code":"CL","type":"facility","lineage":["https://openalex.org/I4210086090","https://openalex.org/I4923324"]}],"countries":["CL"],"is_corresponding":true,"raw_author_name":"Gonzalo Navarro","raw_affiliation_strings":["CeBiB\u2014Center for Biotechnology and Bioengineering, Santiago, Chile","Department of Computer Science, University of Chile, Beauchef 851, Santiago, Chile"],"affiliations":[{"raw_affiliation_string":"CeBiB\u2014Center for Biotechnology and Bioengineering, Santiago, Chile","institution_ids":["https://openalex.org/I4210086090"]},{"raw_affiliation_string":"Department of Computer Science, University of Chile, Beauchef 851, Santiago, Chile","institution_ids":["https://openalex.org/I69737025"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021097696","display_name":"Simon J. Puglisi","orcid":"https://orcid.org/0000-0001-7668-7636"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Simon J Puglisi","raw_affiliation_strings":["Department of Computer Science, University of Helsinki, Helsinki, Finland"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Helsinki, Helsinki, Finland","institution_ids":["https://openalex.org/I133731052"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066730758","display_name":"Jouni Sir\u00e9n","orcid":"https://orcid.org/0000-0001-5828-4139"},"institutions":[{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jouni Sir\u00e9n","raw_affiliation_strings":["Wellcome Trust Sanger Institute, Hinxton CB10 1SA, UK"],"affiliations":[{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Hinxton CB10 1SA, UK","institution_ids":["https://openalex.org/I2802476451"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5080743153"],"corresponding_institution_ids":["https://openalex.org/I4210086090","https://openalex.org/I69737025"],"apc_list":{"value":2635,"currency":"GBP","value_usd":3232},"apc_paid":{"value":2635,"currency":"GBP","value_usd":3232},"fwci":1.2472,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.84878084,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"61","issue":"5","first_page":"773","last_page":"788"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9840999841690063,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9162999987602234,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/compressed-suffix-array","display_name":"Compressed suffix array","score":0.9450953006744385},{"id":"https://openalex.org/keywords/generalized-suffix-tree","display_name":"Generalized suffix tree","score":0.9311175346374512},{"id":"https://openalex.org/keywords/suffix","display_name":"Suffix","score":0.8865996599197388},{"id":"https://openalex.org/keywords/suffix-tree","display_name":"Suffix tree","score":0.8799182176589966},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6784646511077881},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6312593817710876},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.552927553653717},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4666718542575836},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.43018242716789246},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3192507028579712},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.2533573508262634},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.04797762632369995}],"concepts":[{"id":"https://openalex.org/C100903775","wikidata":"https://www.wikidata.org/wiki/Q5157028","display_name":"Compressed suffix array","level":4,"score":0.9450953006744385},{"id":"https://openalex.org/C118146561","wikidata":"https://www.wikidata.org/wiki/Q5532514","display_name":"Generalized suffix tree","level":4,"score":0.9311175346374512},{"id":"https://openalex.org/C2779804580","wikidata":"https://www.wikidata.org/wiki/Q102047","display_name":"Suffix","level":2,"score":0.8865996599197388},{"id":"https://openalex.org/C2781166958","wikidata":"https://www.wikidata.org/wiki/Q1426863","display_name":"Suffix tree","level":3,"score":0.8799182176589966},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6784646511077881},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6312593817710876},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.552927553653717},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4666718542575836},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.43018242716789246},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3192507028579712},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.2533573508262634},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.04797762632369995},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[],"locations_count":7,"locations":[{"id":"doi:10.1093/comjnl/bxx108","is_oa":true,"landing_page_url":"https://doi.org/10.1093/comjnl/bxx108","pdf_url":"https://academic.oup.com/comjnl/article-pdf/61/5/773/24724637/bxx108.pdf","source":{"id":"https://openalex.org/S44643521","display_name":"The Computer Journal","issn_l":"0010-4620","issn":["0010-4620","1460-2067"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Computer Journal","raw_type":"journal-article"},{"id":"pmid:29795706","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29795706","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The computer journal","raw_type":null},{"id":"pmh:oai:arXiv.org:1508.02550","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1508.02550","pdf_url":"https://arxiv.org/pdf/1508.02550","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:europepmc.org:4877961","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC5956352","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:helda.helsinki.fi:10138/237052","is_oa":true,"landing_page_url":"http://hdl.handle.net/10138/237052","pdf_url":null,"source":{"id":"https://openalex.org/S4210213322","display_name":"Ty\u00f6v\u00e4entutkimus Vuosikirja","issn_l":"0784-1272","issn":["0784-1272","1459-7780"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5956352","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5956352","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Comput J","raw_type":"Text"},{"id":"pmh:oai:repositorio.uchile.cl:2250/152943","is_oa":true,"landing_page_url":"https://repositorio.uchile.cl/handle/2250/152943","pdf_url":null,"source":{"id":"https://openalex.org/S4306481413","display_name":"Universidad de Chile","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Computer Journal","raw_type":"Art\u00edculo de revista"}],"best_oa_location":{"id":"doi:10.1093/comjnl/bxx108","is_oa":true,"landing_page_url":"https://doi.org/10.1093/comjnl/bxx108","pdf_url":"https://academic.oup.com/comjnl/article-pdf/61/5/773/24724637/bxx108.pdf","source":{"id":"https://openalex.org/S44643521","display_name":"The Computer Journal","issn_l":"0010-4620","issn":["0010-4620","1460-2067"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Computer Journal","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7274432344","display_name":null,"funder_award_id":"098051","funder_id":"https://openalex.org/F4320307874","funder_display_name":"Wellcome"},{"id":"https://openalex.org/G8666890344","display_name":null,"funder_award_id":"098051","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"}],"funders":[{"id":"https://openalex.org/F4320307874","display_name":"Wellcome","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320334901","display_name":"Jenny ja Antti Wihurin Rahasto","ror":"https://ror.org/01gpyzq83"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2617428261.pdf","grobid_xml":"https://content.openalex.org/works/W2617428261.grobid-xml"},"referenced_works_count":78,"referenced_works":["https://openalex.org/W6247929","https://openalex.org/W56633652","https://openalex.org/W226134553","https://openalex.org/W938539187","https://openalex.org/W1201605537","https://openalex.org/W1485941238","https://openalex.org/W1534681609","https://openalex.org/W1552221124","https://openalex.org/W1560609674","https://openalex.org/W1573352354","https://openalex.org/W1749587086","https://openalex.org/W1826264422","https://openalex.org/W1878541814","https://openalex.org/W1949346071","https://openalex.org/W1962019683","https://openalex.org/W1974033543","https://openalex.org/W1982732918","https://openalex.org/W1990061958","https://openalex.org/W2000788935","https://openalex.org/W2010361633","https://openalex.org/W2011210839","https://openalex.org/W2030962049","https://openalex.org/W2031143773","https://openalex.org/W2033005962","https://openalex.org/W2041445031","https://openalex.org/W2046038806","https://openalex.org/W2055417893","https://openalex.org/W2059029449","https://openalex.org/W2073921136","https://openalex.org/W2096258819","https://openalex.org/W2101881908","https://openalex.org/W2104549677","https://openalex.org/W2107082304","https://openalex.org/W2107745473","https://openalex.org/W2113004376","https://openalex.org/W2113401694","https://openalex.org/W2130956967","https://openalex.org/W2134199796","https://openalex.org/W2134283755","https://openalex.org/W2134696992","https://openalex.org/W2135208303","https://openalex.org/W2137661542","https://openalex.org/W2137892587","https://openalex.org/W2138831039","https://openalex.org/W2141931308","https://openalex.org/W2154803978","https://openalex.org/W2157714561","https://openalex.org/W2158874082","https://openalex.org/W2159647614","https://openalex.org/W2161488606","https://openalex.org/W2170899819","https://openalex.org/W2171532727","https://openalex.org/W2299901589","https://openalex.org/W2332063415","https://openalex.org/W2337832663","https://openalex.org/W2406547600","https://openalex.org/W2407334068","https://openalex.org/W2407929722","https://openalex.org/W2527072329","https://openalex.org/W2533248932","https://openalex.org/W2603734366","https://openalex.org/W2613660619","https://openalex.org/W2688497151","https://openalex.org/W2728987999","https://openalex.org/W2911967969","https://openalex.org/W2949652671","https://openalex.org/W2951235224","https://openalex.org/W2952152294","https://openalex.org/W2952379095","https://openalex.org/W2952379406","https://openalex.org/W2952380754","https://openalex.org/W2952642563","https://openalex.org/W2952791107","https://openalex.org/W3005955194","https://openalex.org/W3037431088","https://openalex.org/W3100935868","https://openalex.org/W3105551235","https://openalex.org/W4309429944"],"related_works":["https://openalex.org/W96331545","https://openalex.org/W2617428261","https://openalex.org/W1517600056","https://openalex.org/W2405892617","https://openalex.org/W2073921136","https://openalex.org/W4293529780","https://openalex.org/W1575722140","https://openalex.org/W3022556214","https://openalex.org/W2160738675","https://openalex.org/W2003608043"],"abstract_inverted_index":{"Suffix":[0],"trees":[1,82,97,127],"are":[2],"one":[3],"of":[4,27,68,90,98,106],"the":[5,31,41,57,69,95,103,123,136],"most":[6],"versatile":[7],"data":[8,52,112],"structures":[9,53,113],"in":[10,15,133],"stringology,":[11],"with":[12,135],"many":[13],"applications":[14],"bioinformatics.":[16],"Their":[17],"main":[18],"drawback":[19],"is":[20],"their":[21],"size,":[22],"which":[23],"can":[24,54],"be":[25],"tens":[26],"times":[28],"larger":[29],"than":[30],"input":[32],"sequence.":[33,70,109],"Much":[34],"effort":[35],"has":[36],"been":[37],"put":[38],"into":[39],"reducing":[40],"space":[42,62],"usage,":[43],"leading":[44],"ultimately":[45],"to":[46,64,79,102],"compressed":[47,51,66,80,125,140],"suffix":[48,58,81,96,104,126,141],"trees.":[49,142],"These":[50,110],"efficiently":[55],"simulate":[56],"tree,":[59],"while":[60],"using":[61],"proportional":[63],"a":[65,76,107],"representation":[67],"In":[71],"this":[72],"work,":[73],"we":[74],"take":[75],"new":[77],"approach":[78],"for":[83,128],"repetitive":[84,129],"sequence":[85],"collections,":[86,130],"such":[87],"as":[88,120,122],"collections":[89],"individual":[91,99],"genomes.":[92],"We":[93],"compress":[94],"sequences":[100],"relative":[101,111],"tree":[105],"reference":[108],"provide":[114],"competitive":[115,132],"time/space":[116],"trade-offs,":[117],"being":[118],"almost":[119],"small":[121],"smallest":[124],"and":[131,138],"time":[134],"largest":[137],"fastest":[139]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":2}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
