{"id":"https://openalex.org/W3001419568","doi":"https://doi.org/10.1093/bioinformatics/btz958","title":"METADOCK 2: a high-throughput parallel metaheuristic scheme for molecular docking","display_name":"METADOCK 2: a high-throughput parallel metaheuristic scheme for molecular docking","publication_year":2020,"publication_date":"2020-01-16","ids":{"openalex":"https://openalex.org/W3001419568","doi":"https://doi.org/10.1093/bioinformatics/btz958","mag":"3001419568","pmid":"https://pubmed.ncbi.nlm.nih.gov/31960899"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz958","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz958","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/10251/166348","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028232016","display_name":"Baldomero Imbern\u00f3n","orcid":"https://orcid.org/0000-0002-2758-8364"},"institutions":[{"id":"https://openalex.org/I68763199","display_name":"Universidad Cat\u00f3lica San Antonio de Murcia","ror":"https://ror.org/05b1rsv17","country_code":"ES","type":"education","lineage":["https://openalex.org/I68763199"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Baldomero Imbern\u00f3n","raw_affiliation_strings":["Structural Bioinformatics and High Performance Computing Research Group (BIO-HPC) , Computer Engineering Department, Universidad Cat\u00f3lica de Murcia (UCAM), 30107 Murcia, Spain"],"affiliations":[{"raw_affiliation_string":"Structural Bioinformatics and High Performance Computing Research Group (BIO-HPC) , Computer Engineering Department, Universidad Cat\u00f3lica de Murcia (UCAM), 30107 Murcia, Spain","institution_ids":["https://openalex.org/I68763199"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101695256","display_name":"Antonio Serrano","orcid":"https://orcid.org/0000-0002-8121-5032"},"institutions":[{"id":"https://openalex.org/I68763199","display_name":"Universidad Cat\u00f3lica San Antonio de Murcia","ror":"https://ror.org/05b1rsv17","country_code":"ES","type":"education","lineage":["https://openalex.org/I68763199"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Antonio Serrano","raw_affiliation_strings":["Structural Bioinformatics and High Performance Computing Research Group (BIO-HPC) , Computer Engineering Department, Universidad Cat\u00f3lica de Murcia (UCAM), 30107 Murcia, Spain"],"affiliations":[{"raw_affiliation_string":"Structural Bioinformatics and High Performance Computing Research Group (BIO-HPC) , Computer Engineering Department, Universidad Cat\u00f3lica de Murcia (UCAM), 30107 Murcia, Spain","institution_ids":["https://openalex.org/I68763199"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091232609","display_name":"Andr\u00e9s Bueno-Crespo","orcid":"https://orcid.org/0000-0003-1734-6852"},"institutions":[{"id":"https://openalex.org/I68763199","display_name":"Universidad Cat\u00f3lica San Antonio de Murcia","ror":"https://ror.org/05b1rsv17","country_code":"ES","type":"education","lineage":["https://openalex.org/I68763199"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Andr\u00e9s Bueno-Crespo","raw_affiliation_strings":["Structural Bioinformatics and High Performance Computing Research Group (BIO-HPC) , Computer Engineering Department, Universidad Cat\u00f3lica de Murcia (UCAM), 30107 Murcia, Spain"],"affiliations":[{"raw_affiliation_string":"Structural Bioinformatics and High Performance Computing Research Group (BIO-HPC) , Computer Engineering Department, Universidad Cat\u00f3lica de Murcia (UCAM), 30107 Murcia, Spain","institution_ids":["https://openalex.org/I68763199"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007832959","display_name":"Jos\u00e9 Luis Abell\u00e1n","orcid":"https://orcid.org/0000-0003-3550-720X"},"institutions":[{"id":"https://openalex.org/I68763199","display_name":"Universidad Cat\u00f3lica San Antonio de Murcia","ror":"https://ror.org/05b1rsv17","country_code":"ES","type":"education","lineage":["https://openalex.org/I68763199"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 L Abell\u00e1n","raw_affiliation_strings":["Structural Bioinformatics and High Performance Computing Research Group (BIO-HPC) , Computer Engineering Department, Universidad Cat\u00f3lica de Murcia (UCAM), 30107 Murcia, Spain"],"affiliations":[{"raw_affiliation_string":"Structural Bioinformatics and High Performance Computing Research Group (BIO-HPC) , Computer Engineering Department, Universidad Cat\u00f3lica de Murcia (UCAM), 30107 Murcia, Spain","institution_ids":["https://openalex.org/I68763199"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037673215","display_name":"Horacio P\u00e9rez\u2010S\u00e1nchez","orcid":"https://orcid.org/0000-0003-4468-7898"},"institutions":[{"id":"https://openalex.org/I68763199","display_name":"Universidad Cat\u00f3lica San Antonio de Murcia","ror":"https://ror.org/05b1rsv17","country_code":"ES","type":"education","lineage":["https://openalex.org/I68763199"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Horacio P\u00e9rez-S\u00e1nchez","raw_affiliation_strings":["Structural Bioinformatics and High Performance Computing Research Group (BIO-HPC) , Computer Engineering Department, Universidad Cat\u00f3lica de Murcia (UCAM), 30107 Murcia, Spain"],"affiliations":[{"raw_affiliation_string":"Structural Bioinformatics and High Performance Computing Research Group (BIO-HPC) , Computer Engineering Department, Universidad Cat\u00f3lica de Murcia (UCAM), 30107 Murcia, Spain","institution_ids":["https://openalex.org/I68763199"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088468258","display_name":"Jos\u00e9 M. Cecilia","orcid":"https://orcid.org/0000-0001-5648-214X"},"institutions":[{"id":"https://openalex.org/I68763199","display_name":"Universidad Cat\u00f3lica San Antonio de Murcia","ror":"https://ror.org/05b1rsv17","country_code":"ES","type":"education","lineage":["https://openalex.org/I68763199"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Jos\u00e9 M Cecilia","raw_affiliation_strings":["Structural Bioinformatics and High Performance Computing Research Group (BIO-HPC) , Computer Engineering Department, Universidad Cat\u00f3lica de Murcia (UCAM), 30107 Murcia, Spain"],"affiliations":[{"raw_affiliation_string":"Structural Bioinformatics and High Performance Computing Research Group (BIO-HPC) , Computer Engineering Department, Universidad Cat\u00f3lica de Murcia (UCAM), 30107 Murcia, Spain","institution_ids":["https://openalex.org/I68763199"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5028232016","https://openalex.org/A5037673215","https://openalex.org/A5088468258"],"corresponding_institution_ids":["https://openalex.org/I68763199"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.5329,"has_fulltext":false,"cited_by_count":23,"citation_normalized_percentile":{"value":0.91442324,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"37","issue":"11","first_page":"1515","last_page":"1520"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11663","display_name":"Viral Infectious Diseases and Gene Expression in Insects","score":0.978600025177002,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/autodock","display_name":"AutoDock","score":0.9369744658470154},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7324328422546387},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.7043625116348267},{"id":"https://openalex.org/keywords/metaheuristic","display_name":"Metaheuristic","score":0.5788113474845886},{"id":"https://openalex.org/keywords/protein\u2013ligand-docking","display_name":"Protein\u2013ligand docking","score":0.43662697076797485},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.355074018239975},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34581494331359863},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.1599138081073761},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.13798072934150696},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.09313926100730896}],"concepts":[{"id":"https://openalex.org/C2780152424","wikidata":"https://www.wikidata.org/wiki/Q4826062","display_name":"AutoDock","level":4,"score":0.9369744658470154},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7324328422546387},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.7043625116348267},{"id":"https://openalex.org/C109718341","wikidata":"https://www.wikidata.org/wiki/Q1385229","display_name":"Metaheuristic","level":2,"score":0.5788113474845886},{"id":"https://openalex.org/C77319485","wikidata":"https://www.wikidata.org/wiki/Q7251520","display_name":"Protein\u2013ligand docking","level":4,"score":0.43662697076797485},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.355074018239975},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34581494331359863},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.1599138081073761},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.13798072934150696},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.09313926100730896},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btz958","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz958","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31960899","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31960899","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:riunet.upv.es:10251/166348","is_oa":true,"landing_page_url":"http://hdl.handle.net/10251/166348","pdf_url":null,"source":{"id":"https://openalex.org/S4306401500","display_name":"RiuNet (Politechnical University of Valencia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I60053951","host_organization_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","host_organization_lineage":["https://openalex.org/I60053951"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"pmh:oai:riunet.upv.es:10251/166348","is_oa":true,"landing_page_url":"http://hdl.handle.net/10251/166348","pdf_url":null,"source":{"id":"https://openalex.org/S4306401500","display_name":"RiuNet (Politechnical University of Valencia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I60053951","host_organization_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","host_organization_lineage":["https://openalex.org/I60053951"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},"sustainable_development_goals":[{"display_name":"Peace, Justice and strong institutions","score":0.7200000286102295,"id":"https://metadata.un.org/sdg/16"}],"awards":[{"id":"https://openalex.org/G7196281288","display_name":null,"funder_award_id":"RES-BCV-2018-3-0008","funder_id":"https://openalex.org/F4320323868","funder_display_name":"Barcelona Supercomputing Center"}],"funders":[{"id":"https://openalex.org/F4320323868","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W97681402","https://openalex.org/W1528130557","https://openalex.org/W1592950931","https://openalex.org/W1968319881","https://openalex.org/W1985588649","https://openalex.org/W1991161477","https://openalex.org/W2004617458","https://openalex.org/W2016047921","https://openalex.org/W2027978582","https://openalex.org/W2032982318","https://openalex.org/W2039568841","https://openalex.org/W2043620814","https://openalex.org/W2046609661","https://openalex.org/W2074780248","https://openalex.org/W2096553377","https://openalex.org/W2112411768","https://openalex.org/W2123285648","https://openalex.org/W2158534713","https://openalex.org/W2169678694","https://openalex.org/W2233834908","https://openalex.org/W2268192879","https://openalex.org/W2600072887","https://openalex.org/W2735493269","https://openalex.org/W2773453313"],"related_works":["https://openalex.org/W2336040088","https://openalex.org/W2136513242","https://openalex.org/W2058674645","https://openalex.org/W2057846043","https://openalex.org/W2766845742","https://openalex.org/W4385073511","https://openalex.org/W3199423294","https://openalex.org/W1594539819","https://openalex.org/W3113038228","https://openalex.org/W2614191518"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
