{"id":"https://openalex.org/W2993627049","doi":"https://doi.org/10.1093/bioinformatics/btz908","title":"eCAMI: simultaneous classification and motif identification for enzyme annotation","display_name":"eCAMI: simultaneous classification and motif identification for enzyme annotation","publication_year":2019,"publication_date":"2019-12-02","ids":{"openalex":"https://openalex.org/W2993627049","doi":"https://doi.org/10.1093/bioinformatics/btz908","mag":"2993627049","pmid":"https://pubmed.ncbi.nlm.nih.gov/31794006"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz908","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz908","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/7/2068/33027614/btz908.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/7/2068/33027614/btz908.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042066408","display_name":"Jing Xu","orcid":"https://orcid.org/0000-0001-8532-2241"},"institutions":[{"id":"https://openalex.org/I205237279","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75","country_code":"CN","type":"education","lineage":["https://openalex.org/I205237279"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jing Xu","raw_affiliation_strings":["College of Artificial Intelligence, Nankai University , Tianjin 300071, China","College of Computer Science, Nankai University , Tianjin 300071, China"],"affiliations":[{"raw_affiliation_string":"College of Artificial Intelligence, Nankai University , Tianjin 300071, China","institution_ids":["https://openalex.org/I205237279"]},{"raw_affiliation_string":"College of Computer Science, Nankai University , Tianjin 300071, China","institution_ids":["https://openalex.org/I205237279"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100399265","display_name":"Han Zhang","orcid":"https://orcid.org/0000-0001-8498-3451"},"institutions":[{"id":"https://openalex.org/I205237279","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75","country_code":"CN","type":"education","lineage":["https://openalex.org/I205237279"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Han Zhang","raw_affiliation_strings":["College of Artificial Intelligence, Nankai University , Tianjin 300071, China"],"affiliations":[{"raw_affiliation_string":"College of Artificial Intelligence, Nankai University , Tianjin 300071, China","institution_ids":["https://openalex.org/I205237279"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073455841","display_name":"Jinfang Zheng","orcid":"https://orcid.org/0000-0001-5966-7713"},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jinfang Zheng","raw_affiliation_strings":["Department of Food Science and Technology, Nebraska Food for Health Center, University of Nebraska , Lincoln, NE 68588, USA"],"affiliations":[{"raw_affiliation_string":"Department of Food Science and Technology, Nebraska Food for Health Center, University of Nebraska , Lincoln, NE 68588, USA","institution_ids":["https://openalex.org/I114395901"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039738012","display_name":"Philippe Dovoedo","orcid":null},"institutions":[{"id":"https://openalex.org/I102502594","display_name":"Northern Illinois University","ror":"https://ror.org/012wxa772","country_code":"US","type":"education","lineage":["https://openalex.org/I102502594"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Philippe Dovoedo","raw_affiliation_strings":["Department of Mathematical Sciences, Northern Illinois University , DeKalb, IL 60115, USA"],"affiliations":[{"raw_affiliation_string":"Department of Mathematical Sciences, Northern Illinois University , DeKalb, IL 60115, USA","institution_ids":["https://openalex.org/I102502594"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090843422","display_name":"Yanbin Yin","orcid":"https://orcid.org/0000-0001-7667-881X"},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yanbin Yin","raw_affiliation_strings":["Department of Food Science and Technology, Nebraska Food for Health Center, University of Nebraska , Lincoln, NE 68588, USA"],"affiliations":[{"raw_affiliation_string":"Department of Food Science and Technology, Nebraska Food for Health Center, University of Nebraska , Lincoln, NE 68588, USA","institution_ids":["https://openalex.org/I114395901"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5090843422","https://openalex.org/A5100399265"],"corresponding_institution_ids":["https://openalex.org/I114395901","https://openalex.org/I205237279"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.7461,"has_fulltext":false,"cited_by_count":40,"citation_normalized_percentile":{"value":0.8978128,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"36","issue":"7","first_page":"2068","last_page":"2075"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11617","display_name":"Enzyme Production and Characterization","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1305","display_name":"Biotechnology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11617","display_name":"Enzyme Production and Characterization","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1305","display_name":"Biotechnology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6951687335968018},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6376708745956421},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5053809285163879},{"id":"https://openalex.org/keywords/genome-project","display_name":"Genome project","score":0.4909553825855255},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4743674695491791},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.4417167603969574},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4353674054145813},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.42575493454933167},{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.4204559922218323},{"id":"https://openalex.org/keywords/subfamily","display_name":"Subfamily","score":0.4147939682006836},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.32136619091033936},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.2834923267364502},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.276858925819397},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.18997091054916382},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09784182906150818}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6951687335968018},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6376708745956421},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5053809285163879},{"id":"https://openalex.org/C89566754","wikidata":"https://www.wikidata.org/wiki/Q2273828","display_name":"Genome project","level":4,"score":0.4909553825855255},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4743674695491791},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.4417167603969574},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4353674054145813},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.42575493454933167},{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.4204559922218323},{"id":"https://openalex.org/C50929876","wikidata":"https://www.wikidata.org/wiki/Q164280","display_name":"Subfamily","level":3,"score":0.4147939682006836},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.32136619091033936},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.2834923267364502},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.276858925819397},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.18997091054916382},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09784182906150818}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002241","descriptor_name":"Carbohydrates","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002241","descriptor_name":"Carbohydrates","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002241","descriptor_name":"Carbohydrates","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btz908","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz908","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/7/2068/33027614/btz908.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31794006","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31794006","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz908","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz908","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/7/2068/33027614/btz908.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3556308910","display_name":null,"funder_award_id":"61973174","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5055379714","display_name":null,"funder_award_id":"DBI-1933521","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5827042519","display_name":null,"funder_award_id":"58-8042-9-089","funder_id":"https://openalex.org/F4320306114","funder_display_name":"U.S. Department of Agriculture"},{"id":"https://openalex.org/G6016289018","display_name":null,"funder_award_id":"31728013","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"},{"id":"https://openalex.org/F4320310264","display_name":"University of Nebraska-Lincoln","ror":"https://ror.org/043mer456"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2993627049.pdf","grobid_xml":"https://content.openalex.org/works/W2993627049.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W1984794455","https://openalex.org/W1992581858","https://openalex.org/W2007828112","https://openalex.org/W2013934044","https://openalex.org/W2026666393","https://openalex.org/W2045204781","https://openalex.org/W2049381178","https://openalex.org/W2084438319","https://openalex.org/W2085176241","https://openalex.org/W2103539617","https://openalex.org/W2111973517","https://openalex.org/W2116322723","https://openalex.org/W2122559203","https://openalex.org/W2125546020","https://openalex.org/W2135621733","https://openalex.org/W2139052360","https://openalex.org/W2148000475","https://openalex.org/W2229013467","https://openalex.org/W2589515024","https://openalex.org/W2606024116","https://openalex.org/W2752389306","https://openalex.org/W2761802050","https://openalex.org/W2766352633","https://openalex.org/W2790405355","https://openalex.org/W2796491734","https://openalex.org/W2803787045","https://openalex.org/W2910547486","https://openalex.org/W2947851438","https://openalex.org/W2953321375","https://openalex.org/W6743985744"],"related_works":["https://openalex.org/W24553703","https://openalex.org/W4211000692","https://openalex.org/W4212920271","https://openalex.org/W2612240612","https://openalex.org/W2926533301","https://openalex.org/W2018564950","https://openalex.org/W2035120013","https://openalex.org/W1484074690","https://openalex.org/W4366829534","https://openalex.org/W3109735703"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}