{"id":"https://openalex.org/W2991167490","doi":"https://doi.org/10.1093/bioinformatics/btz896","title":"PyIOmica: longitudinal omics analysis and trend identification","display_name":"PyIOmica: longitudinal omics analysis and trend identification","publication_year":2019,"publication_date":"2019-11-26","ids":{"openalex":"https://openalex.org/W2991167490","doi":"https://doi.org/10.1093/bioinformatics/btz896","mag":"2991167490","pmid":"https://pubmed.ncbi.nlm.nih.gov/31778155"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz896","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz896","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/7/2306/33027234/btz896.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/7/2306/33027234/btz896.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050246743","display_name":"Sergii Domanskyi","orcid":"https://orcid.org/0000-0002-6847-6019"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sergii Domanskyi","raw_affiliation_strings":["Department of Physics and Astronomy , East Lansing, MI 48824, USA"],"affiliations":[{"raw_affiliation_string":"Department of Physics and Astronomy , East Lansing, MI 48824, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053987245","display_name":"Carlo Piermarocchi","orcid":"https://orcid.org/0000-0003-2762-8562"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Carlo Piermarocchi","raw_affiliation_strings":["Department of Physics and Astronomy , East Lansing, MI 48824, USA"],"affiliations":[{"raw_affiliation_string":"Department of Physics and Astronomy , East Lansing, MI 48824, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5007111330","display_name":"George I. Mias","orcid":"https://orcid.org/0000-0002-9083-1216"},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"George I Mias","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology , East Lansing, MI 48824, USA","Department of Physics and Astronomy , East Lansing, MI 48824, USA","Institute for Quantitative Health Science and Engineering, Michigan State University , East Lansing, MI 48824, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology , East Lansing, MI 48824, USA","institution_ids":[]},{"raw_affiliation_string":"Department of Physics and Astronomy , East Lansing, MI 48824, USA","institution_ids":[]},{"raw_affiliation_string":"Institute for Quantitative Health Science and Engineering, Michigan State University , East Lansing, MI 48824, USA","institution_ids":["https://openalex.org/I87216513"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5007111330"],"corresponding_institution_ids":["https://openalex.org/I87216513"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.939,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.7492955,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"36","issue":"7","first_page":"2306","last_page":"2307"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.9199180603027344},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7850301265716553},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.6132652759552002},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5376447439193726},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5062469840049744},{"id":"https://openalex.org/keywords/unix","display_name":"Unix","score":0.5045827627182007},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.4856394827365875},{"id":"https://openalex.org/keywords/executable","display_name":"Executable","score":0.46329841017723083},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.4627276659011841},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.45138436555862427},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.41550785303115845},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.4037645161151886},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3487757444381714},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.34213268756866455}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.9199180603027344},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7850301265716553},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.6132652759552002},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5376447439193726},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5062469840049744},{"id":"https://openalex.org/C112968700","wikidata":"https://www.wikidata.org/wiki/Q11368","display_name":"Unix","level":3,"score":0.5045827627182007},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.4856394827365875},{"id":"https://openalex.org/C160145156","wikidata":"https://www.wikidata.org/wiki/Q778586","display_name":"Executable","level":2,"score":0.46329841017723083},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.4627276659011841},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.45138436555862427},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.41550785303115845},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.4037645161151886},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3487757444381714},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.34213268756866455},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btz896","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz896","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/7/2306/33027234/btz896.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31778155","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31778155","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7141865","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7141865","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz896","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz896","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/7/2306/33027234/btz896.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4508633069","display_name":null,"funder_award_id":"NNX16AO69A","funder_id":"https://openalex.org/F4320306101","funder_display_name":"National Aeronautics and Space Administration"}],"funders":[{"id":"https://openalex.org/F4320306101","display_name":"National Aeronautics and Space Administration","ror":"https://ror.org/027ka1x80"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2991167490.pdf","grobid_xml":"https://content.openalex.org/works/W2991167490.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W1977859620","https://openalex.org/W2055538060","https://openalex.org/W2062584460","https://openalex.org/W2079859830","https://openalex.org/W2114850508","https://openalex.org/W2160697532","https://openalex.org/W2734770034","https://openalex.org/W2803865599","https://openalex.org/W2917207851","https://openalex.org/W2938826237","https://openalex.org/W2939018266","https://openalex.org/W2951891881"],"related_works":["https://openalex.org/W4298269242","https://openalex.org/W4298401663","https://openalex.org/W4386041260","https://openalex.org/W4300787769","https://openalex.org/W4302475558","https://openalex.org/W4301355831","https://openalex.org/W4298345637","https://openalex.org/W2909970103","https://openalex.org/W4376632749","https://openalex.org/W4320855360"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics.":[5]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":4}],"updated_date":"2026-03-02T08:37:19.008085","created_date":"2025-10-10T00:00:00"}
