{"id":"https://openalex.org/W2990665925","doi":"https://doi.org/10.1093/bioinformatics/btz875","title":"Easy-HLA: a validated web application suite to reveal the full details of HLA typing","display_name":"Easy-HLA: a validated web application suite to reveal the full details of HLA typing","publication_year":2019,"publication_date":"2019-11-20","ids":{"openalex":"https://openalex.org/W2990665925","doi":"https://doi.org/10.1093/bioinformatics/btz875","mag":"2990665925","pmid":"https://pubmed.ncbi.nlm.nih.gov/31750874"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz875","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz875","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/7/2157/33027555/btz875.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/7/2157/33027555/btz875.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028590111","display_name":"Estelle Geffard","orcid":null},"institutions":[{"id":"https://openalex.org/I100445878","display_name":"\u00c9cole Centrale de Nantes","ror":"https://ror.org/03nh7d505","country_code":"FR","type":"education","lineage":["https://openalex.org/I100445878","https://openalex.org/I97188460"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I4392021198","display_name":"Center for Research in Transplantation and Translational Immunology","ror":"https://ror.org/01165k395","country_code":null,"type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I4392021198","https://openalex.org/I97188460"]},{"id":"https://openalex.org/I97188460","display_name":"Nantes Universit\u00e9","ror":"https://ror.org/03gnr7b55","country_code":"FR","type":"education","lineage":["https://openalex.org/I97188460"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Estelle Geffard","raw_affiliation_strings":["Nantes Universit\u00e9, Centrale Nantes, CHU Nantes, Inserm, Centre de Recherche en Transplantation et Immunologie , UMR 1064, ITUN, Nantes F-44000, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nantes Universit\u00e9, Centrale Nantes, CHU Nantes, Inserm, Centre de Recherche en Transplantation et Immunologie , UMR 1064, ITUN, Nantes F-44000, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I97188460","https://openalex.org/I100445878","https://openalex.org/I4392021198"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082182356","display_name":"Sophie Limou","orcid":"https://orcid.org/0000-0002-7702-8234"},"institutions":[{"id":"https://openalex.org/I100445878","display_name":"\u00c9cole Centrale de Nantes","ror":"https://ror.org/03nh7d505","country_code":"FR","type":"education","lineage":["https://openalex.org/I100445878","https://openalex.org/I97188460"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I4392021198","display_name":"Center for Research in Transplantation and Translational Immunology","ror":"https://ror.org/01165k395","country_code":null,"type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I4392021198","https://openalex.org/I97188460"]},{"id":"https://openalex.org/I97188460","display_name":"Nantes Universit\u00e9","ror":"https://ror.org/03gnr7b55","country_code":"FR","type":"education","lineage":["https://openalex.org/I97188460"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Sophie Limou","raw_affiliation_strings":["Nantes Universit\u00e9, Centrale Nantes, CHU Nantes, Inserm, Centre de Recherche en Transplantation et Immunologie , UMR 1064, ITUN, Nantes F-44000, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nantes Universit\u00e9, Centrale Nantes, CHU Nantes, Inserm, Centre de Recherche en Transplantation et Immunologie , UMR 1064, ITUN, Nantes F-44000, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I97188460","https://openalex.org/I100445878","https://openalex.org/I4392021198"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041476657","display_name":"Alexandre Walencik","orcid":"https://orcid.org/0000-0001-7748-2982"},"institutions":[{"id":"https://openalex.org/I100445878","display_name":"\u00c9cole Centrale de Nantes","ror":"https://ror.org/03nh7d505","country_code":"FR","type":"education","lineage":["https://openalex.org/I100445878","https://openalex.org/I97188460"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I4210108720","display_name":"Centre Pays de la Loire","ror":"https://ror.org/020jynt45","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210108720"]},{"id":"https://openalex.org/I4392021198","display_name":"Center for Research in Transplantation and Translational Immunology","ror":"https://ror.org/01165k395","country_code":null,"type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I4392021198","https://openalex.org/I97188460"]},{"id":"https://openalex.org/I97188460","display_name":"Nantes Universit\u00e9","ror":"https://ror.org/03gnr7b55","country_code":"FR","type":"education","lineage":["https://openalex.org/I97188460"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Alexandre Walencik","raw_affiliation_strings":["Laboratoire d\u2019Histocompatibilit\u00e9 et d\u2019Immunog\u00e9n\u00e9tique, EFS Centre\u2014Pays de la Loire , Nantes F-44000, France","Nantes Universit\u00e9, Centrale Nantes, CHU Nantes, Inserm, Centre de Recherche en Transplantation et Immunologie , UMR 1064, ITUN, Nantes F-44000, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire d\u2019Histocompatibilit\u00e9 et d\u2019Immunog\u00e9n\u00e9tique, EFS Centre\u2014Pays de la Loire , Nantes F-44000, France","institution_ids":["https://openalex.org/I4210108720"]},{"raw_affiliation_string":"Nantes Universit\u00e9, Centrale Nantes, CHU Nantes, Inserm, Centre de Recherche en Transplantation et Immunologie , UMR 1064, ITUN, Nantes F-44000, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I97188460","https://openalex.org/I100445878","https://openalex.org/I4392021198"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034948133","display_name":"Michelle Daya","orcid":"https://orcid.org/0000-0002-9057-6593"},"institutions":[{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michelle Daya","raw_affiliation_strings":["Department of Medicine, University of Colorado Denver , Aurora, CO 80045, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine, University of Colorado Denver , Aurora, CO 80045, USA","institution_ids":["https://openalex.org/I921990950"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048268619","display_name":"Harold Watson","orcid":null},"institutions":[{"id":"https://openalex.org/I4210158067","display_name":"University of the West Indies","ror":"https://ror.org/05p4f7w60","country_code":"BB","type":"education","lineage":["https://openalex.org/I137799390","https://openalex.org/I4210158067"]}],"countries":["BB"],"is_corresponding":false,"raw_author_name":"Harold Watson","raw_affiliation_strings":["Faculty of Medical Sciences Cave Hill Campus, The University of the West Indies , Bridgetown BB11000, Barbados"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Medical Sciences Cave Hill Campus, The University of the West Indies , Bridgetown BB11000, Barbados","institution_ids":["https://openalex.org/I4210158067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113594252","display_name":"Dara G. Torgerson","orcid":null},"institutions":[{"id":"https://openalex.org/I4210148969","display_name":"McGill University and G\u00e9nome Qu\u00e9bec Innovation Centre","ror":"https://ror.org/0589bxs97","country_code":"CA","type":"education","lineage":["https://openalex.org/I4210148969"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Dara Torgerson","raw_affiliation_strings":["McGill University and Genome Quebec Innovation Centre , Montreal, QC H3A 0G1, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"McGill University and Genome Quebec Innovation Centre , Montreal, QC H3A 0G1, Canada","institution_ids":["https://openalex.org/I4210148969"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008575529","display_name":"Kathleen C. Barnes","orcid":"https://orcid.org/0000-0002-3030-4705"},"institutions":[{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kathleen C Barnes","raw_affiliation_strings":["Department of Medicine, University of Colorado Denver, Aurora, CO 80045, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine, University of Colorado Denver, Aurora, CO 80045, USA,","institution_ids":["https://openalex.org/I921990950"]}]},{"author_position":"middle","author":{"id":null,"display_name":"on behalf of CAAPA","orcid":null},"institutions":[{"id":"https://openalex.org/I4210108720","display_name":"Centre Pays de la Loire","ror":"https://ror.org/020jynt45","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210108720"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"on behalf of CAAPA","raw_affiliation_strings":["Laboratoire d\u2019Histocompatibilit\u00e9 et d\u2019Immunog\u00e9n\u00e9tique, EFS Centre\u2014Pays de la Loire , Nantes F-44000, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire d\u2019Histocompatibilit\u00e9 et d\u2019Immunog\u00e9n\u00e9tique, EFS Centre\u2014Pays de la Loire , Nantes F-44000, France","institution_ids":["https://openalex.org/I4210108720"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086886432","display_name":"Anne Cesbron Gautier","orcid":null},"institutions":[{"id":"https://openalex.org/I100445878","display_name":"\u00c9cole Centrale de Nantes","ror":"https://ror.org/03nh7d505","country_code":"FR","type":"education","lineage":["https://openalex.org/I100445878","https://openalex.org/I97188460"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I4210108720","display_name":"Centre Pays de la Loire","ror":"https://ror.org/020jynt45","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210108720"]},{"id":"https://openalex.org/I4392021198","display_name":"Center for Research in Transplantation and Translational Immunology","ror":"https://ror.org/01165k395","country_code":null,"type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I4392021198","https://openalex.org/I97188460"]},{"id":"https://openalex.org/I97188460","display_name":"Nantes Universit\u00e9","ror":"https://ror.org/03gnr7b55","country_code":"FR","type":"education","lineage":["https://openalex.org/I97188460"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Anne Cesbron Gautier","raw_affiliation_strings":["Laboratoire d\u2019Histocompatibilit\u00e9 et d\u2019Immunog\u00e9n\u00e9tique, EFS Centre\u2014Pays de la Loire , Nantes F-44000, France","Nantes Universit\u00e9, Centrale Nantes, CHU Nantes, Inserm, Centre de Recherche en Transplantation et Immunologie , UMR 1064, ITUN, Nantes F-44000, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire d\u2019Histocompatibilit\u00e9 et d\u2019Immunog\u00e9n\u00e9tique, EFS Centre\u2014Pays de la Loire , Nantes F-44000, France","institution_ids":["https://openalex.org/I4210108720"]},{"raw_affiliation_string":"Nantes Universit\u00e9, Centrale Nantes, CHU Nantes, Inserm, Centre de Recherche en Transplantation et Immunologie , UMR 1064, ITUN, Nantes F-44000, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I97188460","https://openalex.org/I100445878","https://openalex.org/I4392021198"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043461360","display_name":"Pierre\u2010Antoine Gourraud","orcid":"https://orcid.org/0000-0003-1131-9554"},"institutions":[{"id":"https://openalex.org/I100445878","display_name":"\u00c9cole Centrale de Nantes","ror":"https://ror.org/03nh7d505","country_code":"FR","type":"education","lineage":["https://openalex.org/I100445878","https://openalex.org/I97188460"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I4392021198","display_name":"Center for Research in Transplantation and Translational Immunology","ror":"https://ror.org/01165k395","country_code":null,"type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I4392021198","https://openalex.org/I97188460"]},{"id":"https://openalex.org/I97188460","display_name":"Nantes Universit\u00e9","ror":"https://ror.org/03gnr7b55","country_code":"FR","type":"education","lineage":["https://openalex.org/I97188460"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Pierre-Antoine Gourraud","raw_affiliation_strings":["Nantes Universit\u00e9, Centrale Nantes, CHU Nantes, Inserm, Centre de Recherche en Transplantation et Immunologie , UMR 1064, ITUN, Nantes F-44000, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nantes Universit\u00e9, Centrale Nantes, CHU Nantes, Inserm, Centre de Recherche en Transplantation et Immunologie , UMR 1064, ITUN, Nantes F-44000, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I97188460","https://openalex.org/I100445878","https://openalex.org/I4392021198"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084547093","display_name":"Nicolas Vince","orcid":"https://orcid.org/0000-0002-3767-6210"},"institutions":[{"id":"https://openalex.org/I100445878","display_name":"\u00c9cole Centrale de Nantes","ror":"https://ror.org/03nh7d505","country_code":"FR","type":"education","lineage":["https://openalex.org/I100445878","https://openalex.org/I97188460"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I4392021198","display_name":"Center for Research in Transplantation and Translational Immunology","ror":"https://ror.org/01165k395","country_code":null,"type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I4392021198","https://openalex.org/I97188460"]},{"id":"https://openalex.org/I97188460","display_name":"Nantes Universit\u00e9","ror":"https://ror.org/03gnr7b55","country_code":"FR","type":"education","lineage":["https://openalex.org/I97188460"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Nicolas Vince","raw_affiliation_strings":["Nantes Universit\u00e9, Centrale Nantes, CHU Nantes, Inserm, Centre de Recherche en Transplantation et Immunologie , UMR 1064, ITUN, Nantes F-44000, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nantes Universit\u00e9, Centrale Nantes, CHU Nantes, Inserm, Centre de Recherche en Transplantation et Immunologie , UMR 1064, ITUN, Nantes F-44000, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I97188460","https://openalex.org/I100445878","https://openalex.org/I4392021198"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5028590111","https://openalex.org/A5043461360"],"corresponding_institution_ids":["https://openalex.org/I100445878","https://openalex.org/I154526488","https://openalex.org/I4392021198","https://openalex.org/I97188460"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":2629,"currency":"EUR","value_usd":2835},"fwci":1.0258,"has_fulltext":true,"cited_by_count":25,"citation_normalized_percentile":{"value":0.7660586,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"36","issue":"7","first_page":"2157","last_page":"2164"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.6233999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.6233999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.15940000116825104,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10373","display_name":"Renal Transplantation Outcomes and Treatments","score":0.07400000095367432,"subfield":{"id":"https://openalex.org/subfields/2747","display_name":"Transplantation"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.8181071281433105},{"id":"https://openalex.org/keywords/human-leukocyte-antigen","display_name":"Human leukocyte antigen","score":0.8131991624832153},{"id":"https://openalex.org/keywords/typing","display_name":"Typing","score":0.7118027210235596},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6589734554290771},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.6212716698646545},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.458756685256958},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19994598627090454},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14173835515975952},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.09513348340988159},{"id":"https://openalex.org/keywords/speech-recognition","display_name":"Speech recognition","score":0.053862154483795166},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.04179847240447998}],"concepts":[{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.8181071281433105},{"id":"https://openalex.org/C188280979","wikidata":"https://www.wikidata.org/wiki/Q911125","display_name":"Human leukocyte antigen","level":3,"score":0.8131991624832153},{"id":"https://openalex.org/C2781209916","wikidata":"https://www.wikidata.org/wiki/Q3215756","display_name":"Typing","level":2,"score":0.7118027210235596},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6589734554290771},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.6212716698646545},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.458756685256958},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19994598627090454},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14173835515975952},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.09513348340988159},{"id":"https://openalex.org/C28490314","wikidata":"https://www.wikidata.org/wiki/Q189436","display_name":"Speech recognition","level":1,"score":0.053862154483795166},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.04179847240447998},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006650","descriptor_name":"Histocompatibility Testing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006650","descriptor_name":"Histocompatibility Testing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006650","descriptor_name":"Histocompatibility Testing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006650","descriptor_name":"Histocompatibility Testing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btz875","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz875","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/7/2157/33027555/btz875.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31750874","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31750874","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:inserm-02414924v1","is_oa":false,"landing_page_url":"https://inserm.hal.science/inserm-02414924","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2019, pp.btz875. &#x27E8;10.1093/bioinformatics/btz875&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:pubmedcentral.nih.gov:8248894","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8248894","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz875","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz875","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/7/2157/33027555/btz875.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1464039697","display_name":"NExT (I-SITE)","funder_award_id":"ANR-16-IDEX-0007","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G1679034992","display_name":null,"funder_award_id":"R01 AI132476","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G4110203128","display_name":"Immunoth\u00e9rapies Grand Ouest","funder_award_id":"ANR-11-LABX-0016","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G7692946629","display_name":null,"funder_award_id":"ANR-11-LABX-0016-01","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G7761350697","display_name":"Kidney Transplantation - Functional ImmunoGenomics","funder_award_id":"846520","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G7842005466","display_name":null,"funder_award_id":"Horizon 2020","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320320893","display_name":"Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale","ror":"https://ror.org/02vjkv261"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2990665925.pdf","grobid_xml":"https://content.openalex.org/works/W2990665925.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W1517226164","https://openalex.org/W1891283710","https://openalex.org/W1964500037","https://openalex.org/W1968789418","https://openalex.org/W1984578250","https://openalex.org/W2001936053","https://openalex.org/W2011936762","https://openalex.org/W2014592100","https://openalex.org/W2030866061","https://openalex.org/W2032437254","https://openalex.org/W2037918327","https://openalex.org/W2044833878","https://openalex.org/W2053934173","https://openalex.org/W2061069485","https://openalex.org/W2069587618","https://openalex.org/W2073822313","https://openalex.org/W2083878136","https://openalex.org/W2090430326","https://openalex.org/W2109347434","https://openalex.org/W2112752664","https://openalex.org/W2127242994","https://openalex.org/W2158262262","https://openalex.org/W2160666689","https://openalex.org/W2331830314","https://openalex.org/W2531208577","https://openalex.org/W2546442416","https://openalex.org/W2559028527","https://openalex.org/W2560815360","https://openalex.org/W2789259568","https://openalex.org/W2952353133","https://openalex.org/W2952977999","https://openalex.org/W6639337962","https://openalex.org/W6676200504"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W4231704780","https://openalex.org/W2083794993","https://openalex.org/W101503009","https://openalex.org/W4283775834","https://openalex.org/W2888997879","https://openalex.org/W4212841426","https://openalex.org/W2368089815","https://openalex.org/W2394331430","https://openalex.org/W2413704448"],"abstract_inverted_index":{"MOTIVATION:":[0],"The":[1],"HLA":[2,16,48,51,88,104,122,128,201],"system":[3,52],"plays":[4],"a":[5,76,98,162,176,217],"pivotal":[6],"role":[7],"in":[8,18,25,64],"both":[9,148],"clinical":[10],"applications":[11],"and":[12,20,29,32,54,84,100,130,135,143,180,197],"immunology":[13],"research.":[14],"Typing":[15],"genes":[17],"patient":[19],"donor":[21],"is":[22,216],"indeed":[23],"required":[24],"hematopoietic":[26],"stem":[27],"cell":[28],"solid-organ":[30],"transplantation,":[31],"the":[33,45,50,199],"histocompatibility":[34],"complex":[35],"region":[36],"exhibits":[37],"countless":[38],"genetic":[39],"associations":[40,205],"with":[41,68,183],"immune-related":[42],"pathologies.":[43],"Since":[44],"discovery":[46],"of":[47,91,103,165,171],"antigens,":[49],"nomenclature":[53,92],"typing":[55,94,129],"methods":[56],"have":[57],"constantly":[58],"evolved,":[59],"which":[60],"leads":[61],"to":[62,81,117,169],"difficulties":[63],"using":[65,150],"data":[66,229],"generated":[67],"older":[69],"methodologies.":[70],"RESULTS:":[71],"Here,":[72],"we":[73,160],"present":[74],"Easy-HLA,":[75],"web-based":[77],"software":[78],"suite":[79],"designed":[80],"facilitate":[82,193],"analysis":[83,196],"gain":[85],"knowledge":[86],"from":[87,167],"typing,":[89],"regardless":[90],"or":[93,120],"method.":[95],"Easy-HLA":[96,191,215],"implements":[97],"computational":[99],"statistical":[101],"method":[102],"haplotypes":[105,116],"inference":[106],"based":[107],"on":[108],"published":[109],"reference":[110],"populations":[111],"containing":[112],"over":[113],"600":[114],"000":[115],"upgrade":[118],"missing":[119],"partial":[121],"information:":[123],"'HLA-Upgrade'":[124],"tool":[125],"infers":[126],"high-resolution":[127,170],"'HLA-2-Haplo'":[131],"imputes":[132],"haplotype":[133,186],"pairs":[134,187],"provides":[136],"additional":[137],"functional":[138,209],"annotations":[139],"(e.g.":[140],"amino":[141],"acids":[142],"KIR":[144],"ligands).":[145],"We":[146,174],"validated":[147],"tools":[149,192],"two":[151],"independent":[152],"cohorts":[153],"(total":[154],"n":[155],"=":[156],"2500).":[157],"For":[158],"HLA-Upgrade,":[159],"reached":[161],"prediction":[163],"accuracy":[164,182],"92%":[166],"low-":[168],"European":[172,185],"genotypes.":[173],"observed":[175],"96%":[177],"call":[178],"rate":[179],"76%":[181],"HLA-2-Haplo":[184],"prediction.":[188],"In":[189],"conclusion,":[190],"large-scale":[194],"immunogenetic":[195],"promotes":[198],"multi-faceted":[200],"expertise":[202],"beyond":[203],"allelic":[204],"by":[206],"providing":[207],"new":[208],"immunogenomics":[210],"parameters.":[211],"AVAILABILITY":[212],"AND":[213],"IMPLEMENTATION:":[214],"web":[218],"application":[219],"freely":[220],"available":[221,231],"(free":[222],"account)":[223],"at:":[224],"https://hla.univ-nantes.fr.":[225],"SUPPLEMENTARY":[226],"INFORMATION:":[227],"Supplementary":[228],"are":[230],"at":[232],"Bioinformatics":[233],"online.":[234]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":3}],"updated_date":"2026-06-28T08:01:55.173337","created_date":"2025-10-10T00:00:00"}
