{"id":"https://openalex.org/W2986423875","doi":"https://doi.org/10.1093/bioinformatics/btz853","title":"Cross-lingual semantic annotation of biomedical literature: experiments in Spanish and English","display_name":"Cross-lingual semantic annotation of biomedical literature: experiments in Spanish and English","publication_year":2019,"publication_date":"2019-11-13","ids":{"openalex":"https://openalex.org/W2986423875","doi":"https://doi.org/10.1093/bioinformatics/btz853","mag":"2986423875","pmid":"https://pubmed.ncbi.nlm.nih.gov/31730202"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz853","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz853","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/6/1872/32915446/btz853.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/6/1872/32915446/btz853.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072619061","display_name":"Naiara P\u00e9rez","orcid":"https://orcid.org/0000-0001-8648-0428"},"institutions":[{"id":"https://openalex.org/I4210092551","display_name":"Vicomtech","ror":"https://ror.org/0023sah13","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210092551"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Naiara Perez","raw_affiliation_strings":["Vicomtech , SNLT, Donostia 20009, Spain"],"raw_orcid":"https://orcid.org/0000-0001-8648-0428","affiliations":[{"raw_affiliation_string":"Vicomtech , SNLT, Donostia 20009, Spain","institution_ids":["https://openalex.org/I4210092551"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078361247","display_name":"Pablo Accuosto","orcid":"https://orcid.org/0000-0002-3493-6013"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Pablo Accuosto","raw_affiliation_strings":["Barcelona, TALN/DTIC, Universitat Pompeu Fabra , Barcelona 08018, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Barcelona, TALN/DTIC, Universitat Pompeu Fabra , Barcelona 08018, Spain","institution_ids":["https://openalex.org/I170486558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072446636","display_name":"\u00c1lex Bravo","orcid":"https://orcid.org/0000-0001-5999-6269"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"\u00c0lex Bravo","raw_affiliation_strings":["Barcelona, TALN/DTIC, Universitat Pompeu Fabra , Barcelona 08018, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Barcelona, TALN/DTIC, Universitat Pompeu Fabra , Barcelona 08018, Spain","institution_ids":["https://openalex.org/I170486558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073920793","display_name":"Montse Cuadros","orcid":"https://orcid.org/0000-0002-3620-1053"},"institutions":[{"id":"https://openalex.org/I4210092551","display_name":"Vicomtech","ror":"https://ror.org/0023sah13","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210092551"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Montse Cuadros","raw_affiliation_strings":["Vicomtech , SNLT, Donostia 20009, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Vicomtech , SNLT, Donostia 20009, Spain","institution_ids":["https://openalex.org/I4210092551"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006487431","display_name":"Eva Mart\u00ednez-Garcia","orcid":null},"institutions":[{"id":"https://openalex.org/I4210092551","display_name":"Vicomtech","ror":"https://ror.org/0023sah13","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210092551"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Eva Mart\u00ednez-Garcia","raw_affiliation_strings":["Vicomtech , SNLT, Donostia 20009, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Vicomtech , SNLT, Donostia 20009, Spain","institution_ids":["https://openalex.org/I4210092551"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112375217","display_name":"Horacio Saggion","orcid":null},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Horacio Saggion","raw_affiliation_strings":["Barcelona, TALN/DTIC, Universitat Pompeu Fabra , Barcelona 08018, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Barcelona, TALN/DTIC, Universitat Pompeu Fabra , Barcelona 08018, Spain","institution_ids":["https://openalex.org/I170486558"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073264941","display_name":"Germ\u00e1n Rigau","orcid":"https://orcid.org/0000-0003-1119-0930"},"institutions":[{"id":"https://openalex.org/I169108374","display_name":"University of the Basque Country","ror":"https://ror.org/000xsnr85","country_code":"ES","type":"education","lineage":["https://openalex.org/I169108374"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"German Rigau","raw_affiliation_strings":["IXA Group, HiTZ Centre, University of the Basque Country UPV/EHU , Donostia 20018, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IXA Group, HiTZ Centre, University of the Basque Country UPV/EHU , Donostia 20018, Spain","institution_ids":["https://openalex.org/I169108374"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5072619061"],"corresponding_institution_ids":["https://openalex.org/I4210092551"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.4272,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.62990722,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"36","issue":"6","first_page":"1872","last_page":"1880"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9889000058174133,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9889000058174133,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.0017000000225380063,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.0017000000225380063,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8271879553794861},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.8219642639160156},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.6209312081336975},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5836601853370667},{"id":"https://openalex.org/keywords/machine-translation","display_name":"Machine translation","score":0.5606874823570251},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5600329637527466},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4891400635242462},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.46165406703948975},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3652943968772888}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8271879553794861},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.8219642639160156},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.6209312081336975},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5836601853370667},{"id":"https://openalex.org/C203005215","wikidata":"https://www.wikidata.org/wiki/Q79798","display_name":"Machine translation","level":2,"score":0.5606874823570251},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5600329637527466},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4891400635242462},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.46165406703948975},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3652943968772888},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btz853","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz853","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/6/1872/32915446/btz853.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31730202","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31730202","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:recercat.cat:2072/366663","is_oa":false,"landing_page_url":"http://hdl.handle.net/10230/43132","pdf_url":null,"source":{"id":"https://openalex.org/S4306402147","display_name":"RECERCAT (Consorci de Serveis Universitaris de Catalunya)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210090028","host_organization_name":"Consorci de Serveis Universitaris de Catalunya","host_organization_lineage":["https://openalex.org/I4210090028"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz853","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz853","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/6/1872/32915446/btz853.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7300000190734863,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G1143703731","display_name":null,"funder_award_id":"MDM-2015-0502","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G238061898","display_name":null,"funder_award_id":"TIN2015-72646-EXP","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G3402147602","display_name":null,"funder_award_id":"MDM-2015-0502","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G7013721220","display_name":null,"funder_award_id":"RTI2018-096846-B-C21","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G8181105605","display_name":null,"funder_award_id":"RTI2018","funder_id":"https://openalex.org/F4320315062","funder_display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades"}],"funders":[{"id":"https://openalex.org/F4320315062","display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades","ror":null},{"id":"https://openalex.org/F4320321837","display_name":"Ministerio de Econom\u00eda y Competitividad","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320335598","display_name":"Agencia Estatal de Investigaci\u00f3n","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2986423875.pdf","grobid_xml":"https://content.openalex.org/works/W2986423875.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W101651648","https://openalex.org/W1527927437","https://openalex.org/W1747666062","https://openalex.org/W1935434993","https://openalex.org/W2013469333","https://openalex.org/W2053154970","https://openalex.org/W2096777607","https://openalex.org/W2100157745","https://openalex.org/W2123402141","https://openalex.org/W2137257434","https://openalex.org/W2142364412","https://openalex.org/W2146089916","https://openalex.org/W2239231358","https://openalex.org/W2493916176","https://openalex.org/W2769851464","https://openalex.org/W2827136932","https://openalex.org/W6675353662","https://openalex.org/W6723250868","https://openalex.org/W6753286677"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2775554247","https://openalex.org/W2110168585","https://openalex.org/W3107474891","https://openalex.org/W2250213760","https://openalex.org/W4386247111","https://openalex.org/W4327642362","https://openalex.org/W2587014613"],"abstract_inverted_index":{"MOTIVATION:":[0],"Biomedical":[1],"literature":[2],"is":[3,69,74,98,124],"one":[4],"of":[5,10,18,22,58,66,80,110,117,130,149,170,173],"the":[6,16,25,31,43,56,77,84,108,114,127,171,187,197],"most":[7,26],"relevant":[8],"sources":[9],"information":[11,138],"for":[12,63,113,205],"knowledge":[13],"mining":[14],"in":[15,30,33,48,83,120],"field":[17],"Bioinformatics.":[19],"In":[20],"spite":[21],"English":[23,157],"being":[24],"widely":[27],"addressed":[28],"language":[29,45,59,93],"field;":[32],"recent":[34],"years,":[35],"there":[36],"has":[37,183],"been":[38],"a":[39,150,180],"growing":[40],"interest":[41],"from":[42],"natural":[44],"processing":[46,97],"community":[47],"dealing":[49],"with":[50,76],"languages":[51],"other":[52],"than":[53],"English.":[54],"However,":[55],"availability":[57],"resources":[60],"and":[61,133,140,159,196],"tools":[62],"appropriate":[64],"treatment":[65],"non-English":[67],"texts":[68,82,119,132],"lacking":[70],"behind.":[71],"Our":[72,176],"research":[73,206],"concerned":[75],"semantic":[78],"annotation":[79,116,135,198],"biomedical":[81,95,118],"Spanish":[85,131],"language,":[86],"which":[87],"can":[88],"be":[89],"considered":[90],"an":[91,137],"under-resourced":[92],"where":[94],"text":[96],"concerned.":[99],"RESULTS:":[100],"We":[101],"have":[102],"carried":[103],"out":[104],"experiments":[105],"to":[106,155,163],"assess":[107],"effectiveness":[109],"several":[111],"methods":[112],"automatic":[115],"Spanish.":[121,164],"One":[122],"approach":[123],"based":[125],"on":[126],"linguistic":[128],"analysis":[129],"their":[134],"using":[136],"retrieval":[139],"concept":[141],"disambiguation":[142],"approach.":[143],"A":[144,165],"second":[145],"method":[146,167],"takes":[147,168],"advantage":[148,169],"Spanish-English":[151],"machine":[152],"translation":[153],"process":[154],"annotate":[156],"documents":[158],"transfer":[160,199],"annotations":[161],"back":[162],"third":[166],"combination":[172],"both":[174],"procedures.":[175,190],"evaluation":[177],"shows":[178],"that":[179],"combined":[181],"system":[182],"competitive":[184],"advantages":[185],"over":[186],"two":[188],"individual":[189],"AVAILABILITY":[191],"AND":[192],"IMPLEMENTATION:":[193],"UMLSMapper":[194],"(https://snlt.vicomtech.org/umlsmapper)":[195],"tool":[200],"(http://scientmin.taln.upf.edu/anntransfer/)":[201],"are":[202,217],"freely":[203],"available":[204,218],"purposes":[207],"as":[208],"web":[209],"services":[210],"and/or":[211],"demos.":[212],"SUPPLEMENTARY":[213],"INFORMATION:":[214],"Supplementary":[215],"data":[216],"at":[219],"Bioinformatics":[220],"online.":[221]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":5}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
