{"id":"https://openalex.org/W2988653216","doi":"https://doi.org/10.1093/bioinformatics/btz819","title":"DrawGlycan-SNFG and gpAnnotate: rendering glycans and annotating glycopeptide mass spectra","display_name":"DrawGlycan-SNFG and gpAnnotate: rendering glycans and annotating glycopeptide mass spectra","publication_year":2019,"publication_date":"2019-11-07","ids":{"openalex":"https://openalex.org/W2988653216","doi":"https://doi.org/10.1093/bioinformatics/btz819","mag":"2988653216","pmid":"https://pubmed.ncbi.nlm.nih.gov/31710658"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz819","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz819","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/6/1942/32915404/btz819.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/6/1942/32915404/btz819.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008522740","display_name":"Kai Cheng","orcid":"https://orcid.org/0000-0002-6045-0244"},"institutions":[{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kai Cheng","raw_affiliation_strings":["Department of Chemical and Biological Engineering, Clinical and Translational Research Center, University at Buffalo, The State University of New York , Buffalo, NY 14260, USA"],"affiliations":[{"raw_affiliation_string":"Department of Chemical and Biological Engineering, Clinical and Translational Research Center, University at Buffalo, The State University of New York , Buffalo, NY 14260, USA","institution_ids":["https://openalex.org/I63190737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037229675","display_name":"Gabrielle Pawlowski","orcid":null},"institutions":[{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gabrielle Pawlowski","raw_affiliation_strings":["Department of Chemical and Biological Engineering, Clinical and Translational Research Center, University at Buffalo, The State University of New York , Buffalo, NY 14260, USA"],"affiliations":[{"raw_affiliation_string":"Department of Chemical and Biological Engineering, Clinical and Translational Research Center, University at Buffalo, The State University of New York , Buffalo, NY 14260, USA","institution_ids":["https://openalex.org/I63190737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073093474","display_name":"Xinheng Yu","orcid":"https://orcid.org/0000-0002-7204-6476"},"institutions":[{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xinheng Yu","raw_affiliation_strings":["Department of Chemical and Biological Engineering, Clinical and Translational Research Center, University at Buffalo, The State University of New York , Buffalo, NY 14260, USA"],"affiliations":[{"raw_affiliation_string":"Department of Chemical and Biological Engineering, Clinical and Translational Research Center, University at Buffalo, The State University of New York , Buffalo, NY 14260, USA","institution_ids":["https://openalex.org/I63190737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064037806","display_name":"Yusen Zhou","orcid":"https://orcid.org/0000-0002-9830-682X"},"institutions":[{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yusen Zhou","raw_affiliation_strings":["Department of Chemical and Biological Engineering, Clinical and Translational Research Center, University at Buffalo, The State University of New York , Buffalo, NY 14260, USA"],"affiliations":[{"raw_affiliation_string":"Department of Chemical and Biological Engineering, Clinical and Translational Research Center, University at Buffalo, The State University of New York , Buffalo, NY 14260, USA","institution_ids":["https://openalex.org/I63190737"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054244721","display_name":"Sriram Neelamegham","orcid":"https://orcid.org/0000-0002-1371-8500"},"institutions":[{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Sriram Neelamegham","raw_affiliation_strings":["Department of Chemical and Biological Engineering, Clinical and Translational Research Center, University at Buffalo, The State University of New York , Buffalo, NY 14260, USA"],"affiliations":[{"raw_affiliation_string":"Department of Chemical and Biological Engineering, Clinical and Translational Research Center, University at Buffalo, The State University of New York , Buffalo, NY 14260, USA","institution_ids":["https://openalex.org/I63190737"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5054244721"],"corresponding_institution_ids":["https://openalex.org/I63190737"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.6012,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.67770631,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"36","issue":"6","first_page":"1942","last_page":"1943"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/glycoproteomics","display_name":"Glycoproteomics","score":0.8132457733154297},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7490361332893372},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.6740086078643799},{"id":"https://openalex.org/keywords/chemical-nomenclature","display_name":"Chemical nomenclature","score":0.6372812390327454},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5728623270988464},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.5387595295906067},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.5325502157211304},{"id":"https://openalex.org/keywords/glycomics","display_name":"Glycomics","score":0.5302443504333496},{"id":"https://openalex.org/keywords/rendering","display_name":"Rendering (computer graphics)","score":0.5249987840652466},{"id":"https://openalex.org/keywords/glycan","display_name":"Glycan","score":0.42936161160469055},{"id":"https://openalex.org/keywords/glycopeptide","display_name":"Glycopeptide","score":0.414470374584198},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.37914353609085083},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.33005502820014954},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3222982883453369},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.2781507074832916},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.26954734325408936}],"concepts":[{"id":"https://openalex.org/C156534840","wikidata":"https://www.wikidata.org/wiki/Q5572649","display_name":"Glycoproteomics","level":4,"score":0.8132457733154297},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7490361332893372},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.6740086078643799},{"id":"https://openalex.org/C125832229","wikidata":"https://www.wikidata.org/wiki/Q6503924","display_name":"Chemical nomenclature","level":2,"score":0.6372812390327454},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5728623270988464},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.5387595295906067},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.5325502157211304},{"id":"https://openalex.org/C106686826","wikidata":"https://www.wikidata.org/wiki/Q741206","display_name":"Glycomics","level":4,"score":0.5302443504333496},{"id":"https://openalex.org/C205711294","wikidata":"https://www.wikidata.org/wiki/Q176953","display_name":"Rendering (computer graphics)","level":2,"score":0.5249987840652466},{"id":"https://openalex.org/C206212055","wikidata":"https://www.wikidata.org/wiki/Q2553138","display_name":"Glycan","level":3,"score":0.42936161160469055},{"id":"https://openalex.org/C137610392","wikidata":"https://www.wikidata.org/wiki/Q2425020","display_name":"Glycopeptide","level":3,"score":0.414470374584198},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.37914353609085083},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.33005502820014954},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3222982883453369},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.2781507074832916},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.26954734325408936},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C501593827","wikidata":"https://www.wikidata.org/wiki/Q12187","display_name":"Antibiotics","level":2,"score":0.0},{"id":"https://openalex.org/C108625454","wikidata":"https://www.wikidata.org/wiki/Q187126","display_name":"Glycoprotein","level":2,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btz819","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz819","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/6/1942/32915404/btz819.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31710658","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31710658","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10251767","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10251767","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10251767/pdf/bioinformatics_36_6_1942.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz819","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz819","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/6/1942/32915404/btz819.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4399999976158142,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G2315953156","display_name":null,"funder_award_id":"GM126537","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6041813789","display_name":null,"funder_award_id":"HL103411","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2988653216.pdf","grobid_xml":"https://content.openalex.org/works/W2988653216.grobid-xml"},"referenced_works_count":6,"referenced_works":["https://openalex.org/W2081465448","https://openalex.org/W2190199302","https://openalex.org/W2558826010","https://openalex.org/W2750804254","https://openalex.org/W2953110573","https://openalex.org/W6729925105"],"related_works":["https://openalex.org/W1743013753","https://openalex.org/W2993590996","https://openalex.org/W4320489157","https://openalex.org/W2341557704","https://openalex.org/W2621435706","https://openalex.org/W2040427797","https://openalex.org/W4239419897","https://openalex.org/W2344851944","https://openalex.org/W3113333208","https://openalex.org/W2058713057"],"abstract_inverted_index":{"Supplementary":[0],"Material":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":5}],"updated_date":"2026-04-06T07:47:59.780226","created_date":"2019-11-22T00:00:00"}