{"id":"https://openalex.org/W2985502476","doi":"https://doi.org/10.1093/bioinformatics/btz817","title":"Enzyme annotation in UniProtKB using Rhea","display_name":"Enzyme annotation in UniProtKB using Rhea","publication_year":2019,"publication_date":"2019-10-31","ids":{"openalex":"https://openalex.org/W2985502476","doi":"https://doi.org/10.1093/bioinformatics/btz817","mag":"2985502476","pmid":"https://pubmed.ncbi.nlm.nih.gov/31688925"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz817","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz817","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/6/1896/32915280/btz817.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/6/1896/32915280/btz817.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091324355","display_name":"Anne Morgat","orcid":"https://orcid.org/0000-0002-1216-2969"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Anne Morgat","raw_affiliation_strings":["Swiss-Prot Group, SIB Swiss Institute of Bioinformatics , Geneva 1211-4, Switzerland"],"raw_orcid":"https://orcid.org/0000-0002-1216-2969","affiliations":[{"raw_affiliation_string":"Swiss-Prot Group, SIB Swiss Institute of Bioinformatics , Geneva 1211-4, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086334945","display_name":"Thierry Lombardot","orcid":"https://orcid.org/0000-0003-4157-0029"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Thierry Lombardot","raw_affiliation_strings":["Swiss-Prot Group, SIB Swiss Institute of Bioinformatics , Geneva 1211-4, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss-Prot Group, SIB Swiss Institute of Bioinformatics , Geneva 1211-4, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089027967","display_name":"Elisabeth Coudert","orcid":"https://orcid.org/0000-0001-8314-404X"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Elisabeth Coudert","raw_affiliation_strings":["Swiss-Prot Group, SIB Swiss Institute of Bioinformatics , Geneva 1211-4, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss-Prot Group, SIB Swiss Institute of Bioinformatics , Geneva 1211-4, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077863600","display_name":"Kristian B. Axelsen","orcid":"https://orcid.org/0000-0003-3889-2879"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Kristian Axelsen","raw_affiliation_strings":["Swiss-Prot Group, SIB Swiss Institute of Bioinformatics , Geneva 1211-4, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss-Prot Group, SIB Swiss Institute of Bioinformatics , Geneva 1211-4, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102959026","display_name":"Teresa Batista Neto","orcid":"https://orcid.org/0000-0002-6854-4691"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Teresa Batista Neto","raw_affiliation_strings":["Swiss-Prot Group, SIB Swiss Institute of Bioinformatics , Geneva 1211-4, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss-Prot Group, SIB Swiss Institute of Bioinformatics , Geneva 1211-4, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091567502","display_name":"S\u00e9bastien G\u00e9hant","orcid":"https://orcid.org/0000-0003-1608-9954"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Sebastien Gehant","raw_affiliation_strings":["Swiss-Prot Group, SIB Swiss Institute of Bioinformatics , Geneva 1211-4, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss-Prot Group, SIB Swiss Institute of Bioinformatics , Geneva 1211-4, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078746245","display_name":"Parit Bansal","orcid":"https://orcid.org/0000-0002-0875-1680"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Parit Bansal","raw_affiliation_strings":["Swiss-Prot Group, SIB Swiss Institute of Bioinformatics , Geneva 1211-4, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss-Prot Group, SIB Swiss Institute of Bioinformatics , Geneva 1211-4, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078283120","display_name":"Jerven Bolleman","orcid":"https://orcid.org/0000-0002-7449-1266"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Jerven Bolleman","raw_affiliation_strings":["Swiss-Prot Group, SIB Swiss Institute of Bioinformatics , Geneva 1211-4, Switzerland"],"raw_orcid":"https://orcid.org/0000-0002-7449-1266","affiliations":[{"raw_affiliation_string":"Swiss-Prot Group, SIB Swiss Institute of Bioinformatics , Geneva 1211-4, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051386555","display_name":"Elisabeth Gasteiger","orcid":"https://orcid.org/0000-0003-1829-162X"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Elisabeth Gasteiger","raw_affiliation_strings":["Swiss-Prot Group, SIB Swiss Institute of Bioinformatics , Geneva 1211-4, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss-Prot Group, SIB Swiss Institute of Bioinformatics , Geneva 1211-4, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029434401","display_name":"Edouard de Castro","orcid":"https://orcid.org/0000-0001-5436-7383"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Edouard de Castro","raw_affiliation_strings":["Swiss-Prot Group, SIB Swiss Institute of Bioinformatics , Geneva 1211-4, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss-Prot Group, SIB Swiss Institute of Bioinformatics , Geneva 1211-4, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012694144","display_name":"Delphine Baratin","orcid":"https://orcid.org/0000-0002-4873-3030"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Delphine Baratin","raw_affiliation_strings":["Swiss-Prot Group, SIB Swiss Institute of Bioinformatics , Geneva 1211-4, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss-Prot Group, SIB Swiss Institute of Bioinformatics , Geneva 1211-4, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073745464","display_name":"Monica Pozzato","orcid":"https://orcid.org/0000-0002-3080-5243"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Monica Pozzato","raw_affiliation_strings":["Swiss-Prot Group, SIB Swiss Institute of Bioinformatics , Geneva 1211-4, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss-Prot Group, SIB Swiss Institute of Bioinformatics , Geneva 1211-4, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065825020","display_name":"Ioannis X\u00e9narios","orcid":"https://orcid.org/0000-0002-3413-6841"},"institutions":[{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Ioannis Xenarios","raw_affiliation_strings":["University of Lausanne , Lausanne 1015, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Lausanne , Lausanne 1015, Switzerland","institution_ids":["https://openalex.org/I97565354"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082490970","display_name":"Sylvain Poux","orcid":"https://orcid.org/0000-0001-7299-6685"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Sylvain Poux","raw_affiliation_strings":["Swiss-Prot Group, SIB Swiss Institute of Bioinformatics , Geneva 1211-4, Switzerland"],"raw_orcid":"https://orcid.org/0000-0001-7299-6685","affiliations":[{"raw_affiliation_string":"Swiss-Prot Group, SIB Swiss Institute of Bioinformatics , Geneva 1211-4, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055073392","display_name":"Nicole Redaschi","orcid":"https://orcid.org/0000-0001-8890-2268"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Nicole Redaschi","raw_affiliation_strings":["Swiss-Prot Group, SIB Swiss Institute of Bioinformatics , Geneva 1211-4, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss-Prot Group, SIB Swiss Institute of Bioinformatics , Geneva 1211-4, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090916579","display_name":"Alan Bridge","orcid":"https://orcid.org/0000-0003-2148-9135"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Alan Bridge","raw_affiliation_strings":["Swiss-Prot Group, SIB Swiss Institute of Bioinformatics , Geneva 1211-4, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss-Prot Group, SIB Swiss Institute of Bioinformatics , Geneva 1211-4, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5091324355"],"corresponding_institution_ids":["https://openalex.org/I12708293"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":5.082,"has_fulltext":true,"cited_by_count":102,"citation_normalized_percentile":{"value":0.96690191,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"36","issue":"6","first_page":"1896","last_page":"1901"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.4846000075340271,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.4846000075340271,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.22470000386238098,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.05050000175833702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.9809807538986206},{"id":"https://openalex.org/keywords/sparql","display_name":"SPARQL","score":0.8630980253219604},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7016591429710388},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6496604084968567},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.4903271496295929},{"id":"https://openalex.org/keywords/leverage","display_name":"Leverage (statistics)","score":0.4533296823501587},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4531528949737549},{"id":"https://openalex.org/keywords/oomycete","display_name":"Oomycete","score":0.4231802821159363},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3600624203681946},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3233131170272827},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.29166802763938904},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2850641906261444},{"id":"https://openalex.org/keywords/rdf","display_name":"RDF","score":0.2598021626472473},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.18793213367462158},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.06973141431808472}],"concepts":[{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.9809807538986206},{"id":"https://openalex.org/C41009113","wikidata":"https://www.wikidata.org/wiki/Q54871","display_name":"SPARQL","level":4,"score":0.8630980253219604},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7016591429710388},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6496604084968567},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.4903271496295929},{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.4533296823501587},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4531528949737549},{"id":"https://openalex.org/C2777537739","wikidata":"https://www.wikidata.org/wiki/Q223597","display_name":"Oomycete","level":3,"score":0.4231802821159363},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3600624203681946},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3233131170272827},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.29166802763938904},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2850641906261444},{"id":"https://openalex.org/C147497476","wikidata":"https://www.wikidata.org/wiki/Q54872","display_name":"RDF","level":3,"score":0.2598021626472473},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.18793213367462158},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.06973141431808472},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020311","descriptor_name":"Rheiformes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020311","descriptor_name":"Rheiformes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020311","descriptor_name":"Rheiformes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020311","descriptor_name":"Rheiformes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btz817","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz817","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/6/1896/32915280/btz817.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31688925","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31688925","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:serval.unil.ch:BIB_CFCF95D90BD3","is_oa":true,"landing_page_url":"https://serval.unil.ch/notice/serval:BIB_CFCF95D90BD3","pdf_url":null,"source":{"id":"https://openalex.org/S4306401797","display_name":"SERVAL (Universit\u00e9 de Lausanne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210093590","host_organization_name":"Swiss School of Archaeology in Greece","host_organization_lineage":["https://openalex.org/I4210093590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics, vol. 36, no. 6, pp. 1896-1901","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:iris.unil.ch:iris/180749","is_oa":true,"landing_page_url":"https://iris.unil.ch/handle/iris/180749","pdf_url":"https://iris.unil.ch/bitstreams/57560af9-94b7-4589-89df-cd1a011b291d/download","source":{"id":"https://openalex.org/S7407055444","display_name":"IRIS","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7162351","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7162351","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz817","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz817","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/6/1896/32915280/btz817.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1136479295","display_name":null,"funder_award_id":"U24HG007822","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G1293109142","display_name":null,"funder_award_id":"R01 GM080646","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G1542986764","display_name":null,"funder_award_id":"U24HG007822","funder_id":"https://openalex.org/F4320337357","funder_display_name":"National Institute of Diabetes and Digestive and Kidney Diseases"},{"id":"https://openalex.org/G2003949275","display_name":null,"funder_award_id":"DBI-1062520","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2729212611","display_name":null,"funder_award_id":"U24HG007822","funder_id":"https://openalex.org/F4320337350","funder_display_name":"National Eye Institute"},{"id":"https://openalex.org/G2820513190","display_name":null,"funder_award_id":"U41 HG002273","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G2963954247","display_name":null,"funder_award_id":"U24HG007822","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G3161392028","display_name":null,"funder_award_id":"U24HG007822","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"},{"id":"https://openalex.org/G3169930728","display_name":null,"funder_award_id":"U41HG02273","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G3887245887","display_name":null,"funder_award_id":"BB/M011674/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G4335319007","display_name":null,"funder_award_id":"P20GM103446","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4629778535","display_name":null,"funder_award_id":"P20 GM103446","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G4750929100","display_name":null,"funder_award_id":"U41 HG007822","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G7019681594","display_name":null,"funder_award_id":"G-1307","funder_id":"https://openalex.org/F4320319992","funder_display_name":"British Heart Foundation"},{"id":"https://openalex.org/G7043421377","display_name":null,"funder_award_id":"G08 LM010720","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G7445471151","display_name":null,"funder_award_id":"U24HG007822","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G7477577592","display_name":null,"funder_award_id":"U24HG007822","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G7552339140","display_name":null,"funder_award_id":"U24HG007822","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G779808820","display_name":"Expanding the knowledge of structures and functional information through the SIFTS resource","funder_award_id":"BB/M011674/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G8269682673","display_name":null,"funder_award_id":"R01GM080646","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G8295815155","display_name":null,"funder_award_id":"P20GM103446","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G8517781975","display_name":null,"funder_award_id":"G08LM010720","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G8847482138","display_name":null,"funder_award_id":"U24 HG007822","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G956801073","display_name":"The integration of biomedical research, describing the biological processes relevant to cardiovascular processes, into Gene Ontology, microRNA and protein interaction databases","funder_award_id":"RG/13/5/30112","funder_id":"https://openalex.org/F4320319992","funder_display_name":"British Heart Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320307723","display_name":"Spine Education and Research Institute","ror":"https://ror.org/04v7vb598"},{"id":"https://openalex.org/F4320313288","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52"},{"id":"https://openalex.org/F4320314023","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/050589e39"},{"id":"https://openalex.org/F4320315885","display_name":"Australian Government","ror":"https://ror.org/0314h5y94"},{"id":"https://openalex.org/F4320319992","display_name":"British Heart Foundation","ror":"https://ror.org/02wdwnk04"},{"id":"https://openalex.org/F4320327577","display_name":"SystemsX.ch","ror":"https://ror.org/02s09gf16"},{"id":"https://openalex.org/F4320331322","display_name":"Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45"},{"id":"https://openalex.org/F4320332167","display_name":"Directorate for Biological Sciences","ror":"https://ror.org/001xhss06"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"},{"id":"https://openalex.org/F4320335238","display_name":"Staatssekretariat f\u00fcr Bildung, Forschung und Innovation","ror":"https://ror.org/01kw63t33"},{"id":"https://openalex.org/F4320337337","display_name":"National Institute on Aging","ror":"https://ror.org/049v75w11"},{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"},{"id":"https://openalex.org/F4320337346","display_name":"National Institute of Mental Health","ror":"https://ror.org/04xeg9z08"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337350","display_name":"National Eye Institute","ror":"https://ror.org/03wkg3b53"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"},{"id":"https://openalex.org/F4320337357","display_name":"National Institute of Diabetes and Digestive and Kidney Diseases","ror":"https://ror.org/00adh9b73"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2985502476.pdf"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W183866246","https://openalex.org/W1935434993","https://openalex.org/W1952732684","https://openalex.org/W1960974681","https://openalex.org/W1989277387","https://openalex.org/W1995683190","https://openalex.org/W2032936332","https://openalex.org/W2040022355","https://openalex.org/W2094108329","https://openalex.org/W2107158607","https://openalex.org/W2107785922","https://openalex.org/W2110679449","https://openalex.org/W2111973517","https://openalex.org/W2116687544","https://openalex.org/W2117306286","https://openalex.org/W2127589936","https://openalex.org/W2202347610","https://openalex.org/W2280346092","https://openalex.org/W2319614057","https://openalex.org/W2334617819","https://openalex.org/W2509817535","https://openalex.org/W2543238710","https://openalex.org/W2548357532","https://openalex.org/W2558999090","https://openalex.org/W2765869690","https://openalex.org/W2766510537","https://openalex.org/W2767683865","https://openalex.org/W2801218382","https://openalex.org/W2895341279","https://openalex.org/W2895689867","https://openalex.org/W2897354437","https://openalex.org/W2897473031","https://openalex.org/W2899070097","https://openalex.org/W2899600207","https://openalex.org/W2945153532","https://openalex.org/W2950595506","https://openalex.org/W2955385017","https://openalex.org/W3136918052","https://openalex.org/W4233698560","https://openalex.org/W4250359879"],"related_works":["https://openalex.org/W2052346632","https://openalex.org/W4236497380","https://openalex.org/W2102027645","https://openalex.org/W2107785922","https://openalex.org/W2397655851","https://openalex.org/W2035528219","https://openalex.org/W2402478170","https://openalex.org/W1965202162","https://openalex.org/W2946410450","https://openalex.org/W2901823680"],"abstract_inverted_index":{"MOTIVATION:":[0],"To":[1],"provide":[2],"high":[3],"quality":[4],"computationally":[5],"tractable":[6],"enzyme":[7],"annotation":[8,55],"in":[9,42,59],"UniProtKB":[10,43,94],"using":[11,24],"Rhea,":[12,48],"a":[13],"comprehensive":[14],"expert-curated":[15],"knowledgebase":[16],"of":[17,29,39,56],"biochemical":[18,40],"reactions":[19,41,58],"which":[20,49],"describes":[21],"reaction":[22],"participants":[23],"the":[25,52,69,79],"ChEBI":[26,89],"(Chemical":[27],"Entities":[28],"Biological":[30],"Interest)":[31],"ontology.":[32],"RESULTS:":[33],"We":[34,61],"replaced":[35],"existing":[36],"textual":[37],"descriptions":[38],"with":[44],"their":[45],"equivalents":[46],"from":[47],"is":[50],"now":[51],"standard":[53],"for":[54,68],"enzymatic":[57],"UniProtKB.":[60],"developed":[62],"improved":[63],"search":[64],"and":[65,74,84,88],"query":[66],"facilities":[67],"UniProt":[70,97,102],"website,":[71],"REST":[72,98],"API":[73,99],"SPARQL":[75,103],"endpoint":[76,104],"that":[77,86],"leverage":[78],"chemical":[80],"structure":[81],"data,":[82],"nomenclature":[83],"classification":[85],"Rhea":[87,107],"provide.":[90],"AVAILABILITY":[91],"AND":[92],"IMPLEMENTATION:":[93],"at":[95,100,105,108],"https://www.uniprot.org;":[96],"https://www.uniprot.org/help/api;":[101],"https://sparql.uniprot.org/;":[106],"https://www.rhea-db.org.":[109]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":12},{"year":2022,"cited_by_count":23},{"year":2021,"cited_by_count":27},{"year":2020,"cited_by_count":16},{"year":2019,"cited_by_count":1}],"updated_date":"2026-07-16T13:24:37.021932","created_date":"2025-10-10T00:00:00"}
