{"id":"https://openalex.org/W2980441388","doi":"https://doi.org/10.1093/bioinformatics/btz781","title":"Exploiting transfer learning for the reconstruction of the human gene regulatory network","display_name":"Exploiting transfer learning for the reconstruction of the human gene regulatory network","publication_year":2019,"publication_date":"2019-10-09","ids":{"openalex":"https://openalex.org/W2980441388","doi":"https://doi.org/10.1093/bioinformatics/btz781","mag":"2980441388","pmid":"https://pubmed.ncbi.nlm.nih.gov/31608946"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz781","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz781","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/5/1553/32793797/btz781.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/5/1553/32793797/btz781.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010088261","display_name":"Paolo Mignone","orcid":"https://orcid.org/0000-0002-8641-7880"},"institutions":[{"id":"https://openalex.org/I4210152452","display_name":"Consorzio Interuniversitario Nazionale per l'Informatica","ror":"https://ror.org/03v8v5y65","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210152452"]},{"id":"https://openalex.org/I5561750","display_name":"University of Bari Aldo Moro","ror":"https://ror.org/027ynra39","country_code":"IT","type":"education","lineage":["https://openalex.org/I5561750"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Paolo Mignone","raw_affiliation_strings":["Department of Computer Science, University of Bari Aldo Moro , Bari 70125, Italy","National Interuniversity Consortium for Informatics (CINI) , Roma 00185, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Bari Aldo Moro , Bari 70125, Italy","institution_ids":["https://openalex.org/I5561750"]},{"raw_affiliation_string":"National Interuniversity Consortium for Informatics (CINI) , Roma 00185, Italy","institution_ids":["https://openalex.org/I4210152452"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059781945","display_name":"Gianvito Pio","orcid":"https://orcid.org/0000-0003-2520-3616"},"institutions":[{"id":"https://openalex.org/I4210152452","display_name":"Consorzio Interuniversitario Nazionale per l'Informatica","ror":"https://ror.org/03v8v5y65","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210152452"]},{"id":"https://openalex.org/I5561750","display_name":"University of Bari Aldo Moro","ror":"https://ror.org/027ynra39","country_code":"IT","type":"education","lineage":["https://openalex.org/I5561750"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Gianvito Pio","raw_affiliation_strings":["Department of Computer Science, University of Bari Aldo Moro , Bari 70125, Italy","National Interuniversity Consortium for Informatics (CINI) , Roma 00185, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Bari Aldo Moro , Bari 70125, Italy","institution_ids":["https://openalex.org/I5561750"]},{"raw_affiliation_string":"National Interuniversity Consortium for Informatics (CINI) , Roma 00185, Italy","institution_ids":["https://openalex.org/I4210152452"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009519494","display_name":"Domenica D\u2019Elia","orcid":"https://orcid.org/0000-0003-3787-3836"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Domenica D\u2019Elia","raw_affiliation_strings":["Institute for Biomedical Technologies, CNR, Institute for Biomedical Technologies , Bari 70126, Italy"],"affiliations":[{"raw_affiliation_string":"Institute for Biomedical Technologies, CNR, Institute for Biomedical Technologies , Bari 70126, Italy","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073750332","display_name":"Michelangelo Ceci","orcid":"https://orcid.org/0000-0002-6690-7583"},"institutions":[{"id":"https://openalex.org/I3006985408","display_name":"Jo\u017eef Stefan Institute","ror":"https://ror.org/05060sz93","country_code":"SI","type":"facility","lineage":["https://openalex.org/I3006985408"]},{"id":"https://openalex.org/I5561750","display_name":"University of Bari Aldo Moro","ror":"https://ror.org/027ynra39","country_code":"IT","type":"education","lineage":["https://openalex.org/I5561750"]},{"id":"https://openalex.org/I4210152452","display_name":"Consorzio Interuniversitario Nazionale per l'Informatica","ror":"https://ror.org/03v8v5y65","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210152452"]}],"countries":["IT","SI"],"is_corresponding":false,"raw_author_name":"Michelangelo Ceci","raw_affiliation_strings":["Department of Computer Science, University of Bari Aldo Moro , Bari 70125, Italy","Department of Knowledge Technologies, Jo\u017eef Stefan Institute , Ljubljana 1000, Slovenia","National Interuniversity Consortium for Informatics (CINI) , Roma 00185, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Bari Aldo Moro , Bari 70125, Italy","institution_ids":["https://openalex.org/I5561750"]},{"raw_affiliation_string":"Department of Knowledge Technologies, Jo\u017eef Stefan Institute , Ljubljana 1000, Slovenia","institution_ids":["https://openalex.org/I3006985408"]},{"raw_affiliation_string":"National Interuniversity Consortium for Informatics (CINI) , Roma 00185, Italy","institution_ids":["https://openalex.org/I4210152452"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5059781945"],"corresponding_institution_ids":["https://openalex.org/I4210152452","https://openalex.org/I5561750"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.4094,"has_fulltext":true,"cited_by_count":57,"citation_normalized_percentile":{"value":0.93565257,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"36","issue":"5","first_page":"1553","last_page":"1561"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7986853122711182},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.7488139271736145},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6554111838340759},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.635909378528595},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5958830118179321},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.5617246031761169},{"id":"https://openalex.org/keywords/organism","display_name":"Organism","score":0.5012900829315186},{"id":"https://openalex.org/keywords/transfer-of-learning","display_name":"Transfer of learning","score":0.48151835799217224},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3947761654853821},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.25633955001831055},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1312197744846344},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.12184667587280273}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7986853122711182},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.7488139271736145},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6554111838340759},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.635909378528595},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5958830118179321},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.5617246031761169},{"id":"https://openalex.org/C137858568","wikidata":"https://www.wikidata.org/wiki/Q7239","display_name":"Organism","level":2,"score":0.5012900829315186},{"id":"https://openalex.org/C150899416","wikidata":"https://www.wikidata.org/wiki/Q1820378","display_name":"Transfer of learning","level":2,"score":0.48151835799217224},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3947761654853821},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.25633955001831055},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1312197744846344},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.12184667587280273},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btz781","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz781","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/5/1553/32793797/btz781.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31608946","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31608946","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:ricerca.uniba.it:11586/243901.1","is_oa":false,"landing_page_url":"http://hdl.handle.net/11586/243901","pdf_url":null,"source":{"id":"https://openalex.org/S4377196296","display_name":"CINECA IRIS Institutional Research Information System (University of Bari Aldo Moro)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I5561750","host_organization_name":"University of Bari Aldo Moro","host_organization_lineage":["https://openalex.org/I5561750"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"1 Contributo su Rivista::1.1 Articolo in rivista"},{"id":"pmh:oai:ricerca.uniba.it:11586/472847","is_oa":true,"landing_page_url":"https://hdl.handle.net/11586/472847","pdf_url":null,"source":{"id":"https://openalex.org/S4377196296","display_name":"CINECA IRIS Institutional Research Information System (University of Bari Aldo Moro)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I5561750","host_organization_name":"University of Bari Aldo Moro","host_organization_lineage":["https://openalex.org/I5561750"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz781","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz781","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/5/1553/32793797/btz781.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/1","score":0.6299999952316284,"display_name":"No poverty"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320310906","display_name":"National Research Council Sri Lanka","ror":"https://ror.org/03bjn0010"},{"id":"https://openalex.org/F4320332647","display_name":"Center for Neuroscience Research","ror":"https://ror.org/05wvpxv85"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2980441388.pdf","grobid_xml":"https://content.openalex.org/works/W2980441388.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1489608533","https://openalex.org/W1521228688","https://openalex.org/W1528144985","https://openalex.org/W1549656520","https://openalex.org/W1650533534","https://openalex.org/W1965533866","https://openalex.org/W1968120338","https://openalex.org/W1979104937","https://openalex.org/W1987971958","https://openalex.org/W2061834804","https://openalex.org/W2062858947","https://openalex.org/W2071457420","https://openalex.org/W2076513103","https://openalex.org/W2085756364","https://openalex.org/W2098329817","https://openalex.org/W2099738274","https://openalex.org/W2109384743","https://openalex.org/W2131398297","https://openalex.org/W2145068337","https://openalex.org/W2151038079","https://openalex.org/W2163485494","https://openalex.org/W2164070247","https://openalex.org/W2171111703","https://openalex.org/W2290190008","https://openalex.org/W2395579298","https://openalex.org/W2588246945","https://openalex.org/W2616922646","https://openalex.org/W2761860359","https://openalex.org/W2783365435","https://openalex.org/W2788447865","https://openalex.org/W2790008564","https://openalex.org/W2805553075","https://openalex.org/W2890025111","https://openalex.org/W2908454557","https://openalex.org/W2911964244","https://openalex.org/W2918086501","https://openalex.org/W2949687922","https://openalex.org/W4236484048","https://openalex.org/W6629219271","https://openalex.org/W6674514108"],"related_works":["https://openalex.org/W17155033","https://openalex.org/W3207760230","https://openalex.org/W1496222301","https://openalex.org/W4312814274","https://openalex.org/W1590307681","https://openalex.org/W2536018345","https://openalex.org/W4285370786","https://openalex.org/W2296488620","https://openalex.org/W2358353312","https://openalex.org/W2353836703"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":18},{"year":2020,"cited_by_count":14},{"year":2019,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
