{"id":"https://openalex.org/W2979598477","doi":"https://doi.org/10.1093/bioinformatics/btz776","title":"BiomeNet: a database for construction and analysis of functional interaction networks for any species with a sequenced genome","display_name":"BiomeNet: a database for construction and analysis of functional interaction networks for any species with a sequenced genome","publication_year":2019,"publication_date":"2019-10-08","ids":{"openalex":"https://openalex.org/W2979598477","doi":"https://doi.org/10.1093/bioinformatics/btz776","mag":"2979598477","pmid":"https://pubmed.ncbi.nlm.nih.gov/31599923"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz776","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz776","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/5/1584/32793780/btz776.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/5/1584/32793780/btz776.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067280395","display_name":"Eiru Kim","orcid":"https://orcid.org/0000-0002-1901-5670"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Eiru Kim","raw_affiliation_strings":["Department of Biotechnology, Yonsei University , Seodaemun-gu, Seoul 03722, Korea"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, Yonsei University , Seodaemun-gu, Seoul 03722, Korea","institution_ids":["https://openalex.org/I193775966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051625199","display_name":"Dasom Bae","orcid":null},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Dasom Bae","raw_affiliation_strings":["Department of Biotechnology, Yonsei University , Seodaemun-gu, Seoul 03722, Korea"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, Yonsei University , Seodaemun-gu, Seoul 03722, Korea","institution_ids":["https://openalex.org/I193775966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082946212","display_name":"Sunmo Yang","orcid":null},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Sunmo Yang","raw_affiliation_strings":["Department of Biotechnology, Yonsei University , Seodaemun-gu, Seoul 03722, Korea"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, Yonsei University , Seodaemun-gu, Seoul 03722, Korea","institution_ids":["https://openalex.org/I193775966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058778185","display_name":"Gunhwan Ko","orcid":"https://orcid.org/0000-0002-3570-9074"},"institutions":[{"id":"https://openalex.org/I73616290","display_name":"Korea Research Institute of Bioscience and Biotechnology","ror":"https://ror.org/03ep23f07","country_code":"KR","type":"facility","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I73616290"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Gunhwan Ko","raw_affiliation_strings":["Korean Bioinformation Center , KRIBB, Yuseong-gu, Daejeon 34141, Korea"],"affiliations":[{"raw_affiliation_string":"Korean Bioinformation Center , KRIBB, Yuseong-gu, Daejeon 34141, Korea","institution_ids":["https://openalex.org/I73616290"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100402788","display_name":"Sung\u2010Ho Lee","orcid":"https://orcid.org/0000-0002-7957-3228"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Sungho Lee","raw_affiliation_strings":["Department of Biotechnology, Yonsei University , Seodaemun-gu, Seoul 03722, Korea"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, Yonsei University , Seodaemun-gu, Seoul 03722, Korea","institution_ids":["https://openalex.org/I193775966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103262401","display_name":"Byung-Wook Lee","orcid":"https://orcid.org/0000-0003-2083-8508"},"institutions":[{"id":"https://openalex.org/I73616290","display_name":"Korea Research Institute of Bioscience and Biotechnology","ror":"https://ror.org/03ep23f07","country_code":"KR","type":"facility","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I73616290"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Byungwook Lee","raw_affiliation_strings":["Korean Bioinformation Center , KRIBB, Yuseong-gu, Daejeon 34141, Korea"],"affiliations":[{"raw_affiliation_string":"Korean Bioinformation Center , KRIBB, Yuseong-gu, Daejeon 34141, Korea","institution_ids":["https://openalex.org/I73616290"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035867403","display_name":"Insuk Lee","orcid":"https://orcid.org/0000-0003-3146-6180"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Insuk Lee","raw_affiliation_strings":["Department of Biotechnology, Yonsei University , Seodaemun-gu, Seoul 03722, Korea"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, Yonsei University , Seodaemun-gu, Seoul 03722, Korea","institution_ids":["https://openalex.org/I193775966"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5035867403","https://openalex.org/A5103262401"],"corresponding_institution_ids":["https://openalex.org/I193775966","https://openalex.org/I73616290"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.5114,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.64706223,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"36","issue":"5","first_page":"1584","last_page":"1589"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9890999794006348,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.8152213096618652},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5772165656089783},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5755870938301086},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5332840085029602},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5145527720451355},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4956909418106079},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.44651639461517334},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.44343918561935425},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3427358865737915}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.8152213096618652},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5772165656089783},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5755870938301086},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5332840085029602},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5145527720451355},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4956909418106079},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.44651639461517334},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.44343918561935425},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3427358865737915}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btz776","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz776","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/5/1584/32793780/btz776.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31599923","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31599923","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7703761","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7703761","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz776","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz776","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/5/1584/32793780/btz776.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.6499999761581421}],"awards":[{"id":"https://openalex.org/G1587931373","display_name":null,"funder_award_id":"NRF-2018M3C9A5064704","funder_id":"https://openalex.org/F4320328359","funder_display_name":"Ministry of Science and ICT, South Korea"},{"id":"https://openalex.org/G5651248268","display_name":null,"funder_award_id":"NRF-2019M3A9B6065192","funder_id":"https://openalex.org/F4320328359","funder_display_name":"Ministry of Science and ICT, South Korea"},{"id":"https://openalex.org/G7418621998","display_name":null,"funder_award_id":"NRF-2018R1A5A2025079","funder_id":"https://openalex.org/F4320328359","funder_display_name":"Ministry of Science and ICT, South Korea"},{"id":"https://openalex.org/G7859776976","display_name":null,"funder_award_id":"NRF-2018M3C9A5064709","funder_id":"https://openalex.org/F4320328359","funder_display_name":"Ministry of Science and ICT, South Korea"}],"funders":[{"id":"https://openalex.org/F4320309788","display_name":"Neurosciences Research Foundation","ror":"https://ror.org/05exfab56"},{"id":"https://openalex.org/F4320322120","display_name":"National Research Foundation of Korea","ror":"https://ror.org/013aysd81"},{"id":"https://openalex.org/F4320328359","display_name":"Ministry of Science and ICT, South Korea","ror":"https://ror.org/01wpjm123"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2979598477.pdf","grobid_xml":"https://content.openalex.org/works/W2979598477.grobid-xml"},"referenced_works_count":46,"referenced_works":["https://openalex.org/W1907700015","https://openalex.org/W2018535633","https://openalex.org/W2031418322","https://openalex.org/W2043377651","https://openalex.org/W2045204781","https://openalex.org/W2046618236","https://openalex.org/W2052028007","https://openalex.org/W2068590125","https://openalex.org/W2097217326","https://openalex.org/W2109138480","https://openalex.org/W2111852359","https://openalex.org/W2117527407","https://openalex.org/W2128888818","https://openalex.org/W2136258184","https://openalex.org/W2139679196","https://openalex.org/W2147201730","https://openalex.org/W2150646520","https://openalex.org/W2164813401","https://openalex.org/W2167188257","https://openalex.org/W2179127114","https://openalex.org/W2227497344","https://openalex.org/W2338061460","https://openalex.org/W2400943480","https://openalex.org/W2406749933","https://openalex.org/W2465191219","https://openalex.org/W2484913097","https://openalex.org/W2529257650","https://openalex.org/W2558608341","https://openalex.org/W2558750909","https://openalex.org/W2559588208","https://openalex.org/W2583528454","https://openalex.org/W2604808360","https://openalex.org/W2611604995","https://openalex.org/W2759143570","https://openalex.org/W2802282671","https://openalex.org/W2877556067","https://openalex.org/W2898201023","https://openalex.org/W2899728356","https://openalex.org/W2900569176","https://openalex.org/W2936647581","https://openalex.org/W2939131351","https://openalex.org/W2941265780","https://openalex.org/W2944764218","https://openalex.org/W2946385573","https://openalex.org/W6727689727","https://openalex.org/W7074718217"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W1533177136","https://openalex.org/W4380994516","https://openalex.org/W2380556100"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
