{"id":"https://openalex.org/W2980248332","doi":"https://doi.org/10.1093/bioinformatics/btz760","title":"SynQuant: an automatic tool to quantify synapses from microscopy images","display_name":"SynQuant: an automatic tool to quantify synapses from microscopy images","publication_year":2019,"publication_date":"2019-10-03","ids":{"openalex":"https://openalex.org/W2980248332","doi":"https://doi.org/10.1093/bioinformatics/btz760","mag":"2980248332","pmid":"https://pubmed.ncbi.nlm.nih.gov/31596456"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz760","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz760","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/5/1599/38712559/btz760.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/5/1599/38712559/btz760.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5104668418","display_name":"Yizhi Wang","orcid":"https://orcid.org/0000-0001-9456-0743"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yizhi Wang","raw_affiliation_strings":["Bradley Department of Electrical and Computer Engineering, Virginia Polytechnic Institute and State University , Blacksburg, VA 22203, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bradley Department of Electrical and Computer Engineering, Virginia Polytechnic Institute and State University , Blacksburg, VA 22203, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075854295","display_name":"Congchao Wang","orcid":"https://orcid.org/0000-0002-1318-7180"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Congchao Wang","raw_affiliation_strings":["Bradley Department of Electrical and Computer Engineering, Virginia Polytechnic Institute and State University , Blacksburg, VA 22203, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bradley Department of Electrical and Computer Engineering, Virginia Polytechnic Institute and State University , Blacksburg, VA 22203, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037799592","display_name":"Petter Ranefall","orcid":"https://orcid.org/0000-0002-6699-4015"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]},{"id":"https://openalex.org/I2800139495","display_name":"Science for Life Laboratory","ror":"https://ror.org/04ev03g22","country_code":"SE","type":"facility","lineage":["https://openalex.org/I2800139495"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Petter Ranefall","raw_affiliation_strings":["Centre for Image Analysis and SciLifeLab, Department of Information Technology, Uppsala University , Uppsala, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Image Analysis and SciLifeLab, Department of Information Technology, Uppsala University , Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679","https://openalex.org/I2800139495"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009751100","display_name":"Gerard Joey Broussard","orcid":"https://orcid.org/0000-0003-1636-2615"},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gerard Joey Broussard","raw_affiliation_strings":["Department of Molecular Biology and Princeton Neuroscience Institute, Princeton University , Princeton, NJ 08544, USA"],"raw_orcid":"https://orcid.org/0000-0003-1636-2615","affiliations":[{"raw_affiliation_string":"Department of Molecular Biology and Princeton Neuroscience Institute, Princeton University , Princeton, NJ 08544, USA","institution_ids":["https://openalex.org/I20089843"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040372961","display_name":"Yinxue Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yinxue Wang","raw_affiliation_strings":["Bradley Department of Electrical and Computer Engineering, Virginia Polytechnic Institute and State University , Blacksburg, VA 22203, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bradley Department of Electrical and Computer Engineering, Virginia Polytechnic Institute and State University , Blacksburg, VA 22203, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102340509","display_name":"Guilai Shi","orcid":null},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Guilai Shi","raw_affiliation_strings":["Department of Biochemistry and Molecular Medicine, University of California Davis School of Medicine , Sacramento, CA 95817, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Medicine, University of California Davis School of Medicine , Sacramento, CA 95817, USA","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069220384","display_name":"Boyu Lyu","orcid":"https://orcid.org/0000-0002-9534-3377"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Boyu Lyu","raw_affiliation_strings":["Bradley Department of Electrical and Computer Engineering, Virginia Polytechnic Institute and State University , Blacksburg, VA 22203, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bradley Department of Electrical and Computer Engineering, Virginia Polytechnic Institute and State University , Blacksburg, VA 22203, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110643046","display_name":"Chiung-Ting Wu","orcid":null},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chiung-Ting Wu","raw_affiliation_strings":["Bradley Department of Electrical and Computer Engineering, Virginia Polytechnic Institute and State University , Blacksburg, VA 22203, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bradley Department of Electrical and Computer Engineering, Virginia Polytechnic Institute and State University , Blacksburg, VA 22203, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100372002","display_name":"Yue Wang","orcid":"https://orcid.org/0000-0002-1788-1102"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yue Wang","raw_affiliation_strings":["Bradley Department of Electrical and Computer Engineering, Virginia Polytechnic Institute and State University , Blacksburg, VA 22203, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bradley Department of Electrical and Computer Engineering, Virginia Polytechnic Institute and State University , Blacksburg, VA 22203, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080490976","display_name":"Lin Tian","orcid":"https://orcid.org/0000-0001-7012-6926"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lin Tian","raw_affiliation_strings":["Department of Biochemistry and Molecular Medicine, University of California Davis School of Medicine , Sacramento, CA 95817, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Medicine, University of California Davis School of Medicine , Sacramento, CA 95817, USA","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076006520","display_name":"Guoqiang Yu","orcid":"https://orcid.org/0000-0002-6743-7413"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Guoqiang Yu","raw_affiliation_strings":["Bradley Department of Electrical and Computer Engineering, Virginia Polytechnic Institute and State University , Blacksburg, VA 22203, USA"],"raw_orcid":"https://orcid.org/0000-0002-6743-7413","affiliations":[{"raw_affiliation_string":"Bradley Department of Electrical and Computer Engineering, Virginia Polytechnic Institute and State University , Blacksburg, VA 22203, USA","institution_ids":["https://openalex.org/I859038795"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5076006520"],"corresponding_institution_ids":["https://openalex.org/I859038795"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.1629,"has_fulltext":true,"cited_by_count":70,"citation_normalized_percentile":{"value":0.91993567,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"36","issue":"5","first_page":"1599","last_page":"1606"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.7461000084877014,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.7461000084877014,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10581","display_name":"Neural dynamics and brain function","score":0.03539999946951866,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.025699999183416367,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microscopy","display_name":"Microscopy","score":0.6157518625259399},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5989514589309692},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5042942762374878},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.4134692847728729},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.09071898460388184},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.08081066608428955}],"concepts":[{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.6157518625259399},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5989514589309692},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5042942762374878},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.4134692847728729},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.09071898460388184},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.08081066608428955}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013569","descriptor_name":"Synapses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013569","descriptor_name":"Synapses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013569","descriptor_name":"Synapses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btz760","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz760","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/5/1599/38712559/btz760.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31596456","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31596456","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:escholarship.org:ark:/13030/qt2qq4g34k","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/2qq4g34k","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, vol 36, iss 5","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8215930","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8215930","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz760","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz760","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/5/1599/38712559/btz760.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1408381797","display_name":null,"funder_award_id":"DP2MH107056","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2721467841","display_name":null,"funder_award_id":"R01 HL111362","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G4131441460","display_name":null,"funder_award_id":"U01NS090604","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5870170347","display_name":null,"funder_award_id":"R01MH110504","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6049146910","display_name":null,"funder_award_id":"R01 MH110504","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"},{"id":"https://openalex.org/G6114308627","display_name":"CAREER: Mathematical Modeling and Computational Tools for in vivo Astrocyte Activity","funder_award_id":"1750931","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G69102405","display_name":null,"funder_award_id":"R21NS095325","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7247159392","display_name":null,"funder_award_id":"U01 NS090604","funder_id":"https://openalex.org/F4320337359","funder_display_name":"National Institute of Neurological Disorders and Stroke"},{"id":"https://openalex.org/G7409815226","display_name":null,"funder_award_id":"DP2 MH107056","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"},{"id":"https://openalex.org/G8364579334","display_name":null,"funder_award_id":"R21 NS095325","funder_id":"https://openalex.org/F4320337359","funder_display_name":"National Institute of Neurological Disorders and Stroke"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"},{"id":"https://openalex.org/F4320337346","display_name":"National Institute of Mental Health","ror":"https://ror.org/04xeg9z08"},{"id":"https://openalex.org/F4320337359","display_name":"National Institute of Neurological Disorders and Stroke","ror":"https://ror.org/01s5ya894"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2980248332.pdf","grobid_xml":"https://content.openalex.org/works/W2980248332.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W1547660523","https://openalex.org/W1585289782","https://openalex.org/W2020036235","https://openalex.org/W2031489346","https://openalex.org/W2031611126","https://openalex.org/W2088049833","https://openalex.org/W2098556983","https://openalex.org/W2099096599","https://openalex.org/W2103691573","https://openalex.org/W2110065044","https://openalex.org/W2136035751","https://openalex.org/W2140033867","https://openalex.org/W2158456505","https://openalex.org/W2167279371","https://openalex.org/W2168237413","https://openalex.org/W2169931542","https://openalex.org/W2493402089","https://openalex.org/W2504767107","https://openalex.org/W2549870074","https://openalex.org/W2753019098","https://openalex.org/W2791218687","https://openalex.org/W2805355960","https://openalex.org/W2945047129"],"related_works":["https://openalex.org/W2772917594","https://openalex.org/W2036807459","https://openalex.org/W2058170566","https://openalex.org/W2755342338","https://openalex.org/W2166024367","https://openalex.org/W3116076068","https://openalex.org/W2229312674","https://openalex.org/W2951359407","https://openalex.org/W2079911747","https://openalex.org/W1969923398"],"abstract_inverted_index":{"MOTIVATION:":[0],"Synapses":[1],"are":[2,42,59,237,245],"essential":[3],"to":[4,19,63,87,102,106,130,211],"neural":[5],"signal":[6,101],"transmission.":[7],"Therefore,":[8],"quantification":[9,45,151],"of":[10,26,35,46,78,90,108,113,121,158,172],"synapses":[11,58,122],"and":[12,29,81,93,111,124,132,145,168,182,185,197,234],"related":[13],"neurites":[14,70,80],"from":[15,155],"images":[16,97],"is":[17,84,176],"vital":[18],"gain":[20],"insights":[21],"into":[22,148],"the":[23,32,53,76,88,119,156,164,170],"underlying":[24],"pathways":[25],"brain":[27],"functionality":[28],"diseases.":[30],"Despite":[31],"wide":[33],"availability":[34,112],"synaptic":[36,82],"punctum":[37],"imaging":[38],"data,":[39,184],"several":[40],"issues":[41,117],"impeding":[43],"satisfactory":[44],"these":[47],"structures":[48],"by":[49],"current":[50],"tools.":[51],"First,":[52],"antibodies":[54,66],"used":[55],"for":[56,179],"labeling":[57],"not":[60],"perfectly":[61],"specific":[62],"synapses.":[64,135,174],"These":[65,116],"may":[67],"exist":[68],"in":[69],"or":[71,205],"other":[72],"cell":[73],"compartments.":[74],"Second,":[75],"brightness":[77],"different":[79],"puncta":[83],"heterogeneous":[85],"due":[86,105],"variation":[89],"antibody":[91],"concentration":[92],"synapse-intrinsic":[94],"differences.":[95],"Third,":[96],"often":[98],"have":[99],"low":[100],"noise":[103],"ratio":[104],"constraints":[107],"experiment":[109],"facilities":[110],"sensitive":[114],"antibodies.":[115],"make":[118],"detection":[120,143,217,224],"challenging":[123],"necessitates":[125],"developing":[126],"a":[127],"new":[128],"tool":[129,152],"easily":[131],"accurately":[133],"quantify":[134],"RESULTS:":[136],"We":[137],"present":[138],"an":[139],"automatic":[140],"probability-principled":[141],"synapse":[142,150,216],"algorithm":[144],"integrate":[146],"it":[147],"our":[149,161],"SynQuant.":[153],"Derived":[154],"theory":[157],"order":[159],"statistics,":[160],"method":[162],"controls":[163],"false":[165],"discovery":[166],"rate":[167],"improves":[169],"power":[171],"detecting":[173],"SynQuant":[175,208],"unsupervised,":[177],"works":[178],"both":[180],"2D":[181],"3D":[183],"can":[186],"handle":[187],"multiple":[188],"staining":[189],"channels.":[190],"Through":[191],"extensive":[192],"experiments":[193],"on":[194],"one":[195],"synthetic":[196],"three":[198],"real":[199],"datasets":[200],"with":[201],"ground":[202],"truth":[203],"annotation":[204],"manually":[206],"labeling,":[207],"was":[209],"demonstrated":[210],"outperform":[212],"peer":[213],"specialized":[214],"unsupervised":[215],"tools":[218],"as":[219,221],"well":[220],"generic":[222],"spot":[223],"methods.":[225],"AVAILABILITY":[226],"AND":[227],"IMPLEMENTATION:":[228],"Java":[229],"source":[230],"code,":[231],"Fiji":[232],"plug-in,":[233],"test":[235],"data":[236,244],"available":[238,246],"at":[239,247],"https://github.com/yu-lab-vt/SynQuant.":[240],"SUPPLEMENTARY":[241],"INFORMATION:":[242],"Supplementary":[243],"Bioinformatics":[248],"online.":[249]},"counts_by_year":[{"year":2026,"cited_by_count":10},{"year":2025,"cited_by_count":14},{"year":2024,"cited_by_count":21},{"year":2023,"cited_by_count":12},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
