{"id":"https://openalex.org/W2979713949","doi":"https://doi.org/10.1093/bioinformatics/btz755","title":"BCSExplorer: a customized biosynthetic chemical space explorer with multifunctional objective function analysis","display_name":"BCSExplorer: a customized biosynthetic chemical space explorer with multifunctional objective function analysis","publication_year":2019,"publication_date":"2019-10-02","ids":{"openalex":"https://openalex.org/W2979713949","doi":"https://doi.org/10.1093/bioinformatics/btz755","mag":"2979713949","pmid":"https://pubmed.ncbi.nlm.nih.gov/31593245"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz755","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz755","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/5/1642/32794041/btz755.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/5/1642/32794041/btz755.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072835438","display_name":"Yu Tian","orcid":"https://orcid.org/0000-0001-8079-6149"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210139473","display_name":"Tianjin Institute of Industrial Biotechnology","ror":"https://ror.org/042pyga86","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210139473"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu Tian","raw_affiliation_strings":["Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences , Tianjin 300308, P.R. China","University of Chinese Academy of Sciences , Beijing 100864, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences , Tianjin 300308, P.R. China","institution_ids":["https://openalex.org/I4210139473","https://openalex.org/I19820366"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , Beijing 100864, P.R. China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083621975","display_name":"Ling Wu","orcid":"https://orcid.org/0000-0002-5786-4315"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210139473","display_name":"Tianjin Institute of Industrial Biotechnology","ror":"https://ror.org/042pyga86","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210139473"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ling Wu","raw_affiliation_strings":["Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences , Tianjin 300308, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences , Tianjin 300308, P.R. China","institution_ids":["https://openalex.org/I4210139473","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040288402","display_name":"Le Yuan","orcid":"https://orcid.org/0000-0003-3317-9011"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210139473","display_name":"Tianjin Institute of Industrial Biotechnology","ror":"https://ror.org/042pyga86","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210139473"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Le Yuan","raw_affiliation_strings":["Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences , Tianjin 300308, P.R. China","University of Chinese Academy of Sciences , Beijing 100864, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences , Tianjin 300308, P.R. China","institution_ids":["https://openalex.org/I4210139473","https://openalex.org/I19820366"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , Beijing 100864, P.R. China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073275197","display_name":"Shaozhen Ding","orcid":"https://orcid.org/0000-0002-5581-8403"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210096013","display_name":"Shanghai Institute of Nutrition and Health","ror":"https://ror.org/00rytkh49","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210096013"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shaozhen Ding","raw_affiliation_strings":["CAS Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institute of Nutrition and Health, Shanghai Institutes for Biological Sciences, University of Chinese Academy of Sciences, Chinese Academy of Sciences , Shanghai 200333, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CAS Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institute of Nutrition and Health, Shanghai Institutes for Biological Sciences, University of Chinese Academy of Sciences, Chinese Academy of Sciences , Shanghai 200333, P.R. China","institution_ids":["https://openalex.org/I4210096013","https://openalex.org/I19820366","https://openalex.org/I4210106477"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003473877","display_name":"Chen Fu","orcid":"https://orcid.org/0000-0001-9545-140X"},"institutions":[{"id":"https://openalex.org/I132369690","display_name":"Tianjin University of Science and Technology","ror":"https://ror.org/018rbtf37","country_code":"CN","type":"education","lineage":["https://openalex.org/I132369690"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210139473","display_name":"Tianjin Institute of Industrial Biotechnology","ror":"https://ror.org/042pyga86","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210139473"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fu Chen","raw_affiliation_strings":["College of Biotechnology, Tianjin University of Science and Technology , Tianjin 300457, P.R. China","Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences , Tianjin 300308, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Biotechnology, Tianjin University of Science and Technology , Tianjin 300457, P.R. China","institution_ids":["https://openalex.org/I132369690"]},{"raw_affiliation_string":"Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences , Tianjin 300308, P.R. China","institution_ids":["https://openalex.org/I4210139473","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101753868","display_name":"Tong Zhang","orcid":"https://orcid.org/0000-0002-2442-8613"},"institutions":[{"id":"https://openalex.org/I132369690","display_name":"Tianjin University of Science and Technology","ror":"https://ror.org/018rbtf37","country_code":"CN","type":"education","lineage":["https://openalex.org/I132369690"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210139473","display_name":"Tianjin Institute of Industrial Biotechnology","ror":"https://ror.org/042pyga86","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210139473"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tong Zhang","raw_affiliation_strings":["College of Biotechnology, Tianjin University of Science and Technology , Tianjin 300457, P.R. China","Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences , Tianjin 300308, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Biotechnology, Tianjin University of Science and Technology , Tianjin 300457, P.R. China","institution_ids":["https://openalex.org/I132369690"]},{"raw_affiliation_string":"Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences , Tianjin 300308, P.R. China","institution_ids":["https://openalex.org/I4210139473","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014056786","display_name":"Ailin Ren","orcid":null},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210139473","display_name":"Tianjin Institute of Industrial Biotechnology","ror":"https://ror.org/042pyga86","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210139473"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ailin Ren","raw_affiliation_strings":["Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences , Tianjin 300308, P.R. China","University of Chinese Academy of Sciences , Beijing 100864, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences , Tianjin 300308, P.R. China","institution_ids":["https://openalex.org/I4210139473","https://openalex.org/I19820366"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , Beijing 100864, P.R. China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101469520","display_name":"Dachuan Zhang","orcid":"https://orcid.org/0000-0003-2467-6286"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210096013","display_name":"Shanghai Institute of Nutrition and Health","ror":"https://ror.org/00rytkh49","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210096013"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dachuan Zhang","raw_affiliation_strings":["CAS Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institute of Nutrition and Health, Shanghai Institutes for Biological Sciences, University of Chinese Academy of Sciences, Chinese Academy of Sciences , Shanghai 200333, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CAS Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institute of Nutrition and Health, Shanghai Institutes for Biological Sciences, University of Chinese Academy of Sciences, Chinese Academy of Sciences , Shanghai 200333, P.R. China","institution_ids":["https://openalex.org/I4210096013","https://openalex.org/I19820366","https://openalex.org/I4210106477"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102968278","display_name":"Weizhong Tu","orcid":"https://orcid.org/0000-0002-3820-9956"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Weizhong Tu","raw_affiliation_strings":["Wuhan LifeSynther Science and Technology Co. Limited , Wuhan 430070, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wuhan LifeSynther Science and Technology Co. Limited , Wuhan 430070, P.R. China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081624504","display_name":"Junni Chen","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Junni Chen","raw_affiliation_strings":["Wuhan LifeSynther Science and Technology Co. Limited , Wuhan 430070, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wuhan LifeSynther Science and Technology Co. Limited , Wuhan 430070, P.R. China","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101770220","display_name":"Qian\u2010Nan Hu","orcid":"https://orcid.org/0000-0001-5213-472X"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210096013","display_name":"Shanghai Institute of Nutrition and Health","ror":"https://ror.org/00rytkh49","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210096013"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Qian-Nan Hu","raw_affiliation_strings":["CAS Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institute of Nutrition and Health, Shanghai Institutes for Biological Sciences, University of Chinese Academy of Sciences, Chinese Academy of Sciences , Shanghai 200333, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CAS Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institute of Nutrition and Health, Shanghai Institutes for Biological Sciences, University of Chinese Academy of Sciences, Chinese Academy of Sciences , Shanghai 200333, P.R. China","institution_ids":["https://openalex.org/I4210096013","https://openalex.org/I19820366","https://openalex.org/I4210106477"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5101770220"],"corresponding_institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210096013","https://openalex.org/I4210106477"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.8673,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.75033364,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"36","issue":"5","first_page":"1642","last_page":"1643"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.49779999256134033,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.49779999256134033,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11882","display_name":"Plant biochemistry and biosynthesis","score":0.14550000429153442,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.09780000150203705,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chemical-space","display_name":"Chemical space","score":0.8526443243026733},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.632530689239502},{"id":"https://openalex.org/keywords/biosynthesis","display_name":"Biosynthesis","score":0.6319457292556763},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5746462941169739},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5066242814064026},{"id":"https://openalex.org/keywords/biotransformation","display_name":"Biotransformation","score":0.45148521661758423},{"id":"https://openalex.org/keywords/space","display_name":"Space (punctuation)","score":0.4428962767124176},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.39864397048950195},{"id":"https://openalex.org/keywords/biochemical-engineering","display_name":"Biochemical engineering","score":0.38702452182769775},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.28220662474632263},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2515990138053894},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.24483400583267212},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1096755862236023},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07798132300376892},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07426285743713379}],"concepts":[{"id":"https://openalex.org/C99726746","wikidata":"https://www.wikidata.org/wiki/Q906396","display_name":"Chemical space","level":3,"score":0.8526443243026733},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.632530689239502},{"id":"https://openalex.org/C553450214","wikidata":"https://www.wikidata.org/wiki/Q851162","display_name":"Biosynthesis","level":3,"score":0.6319457292556763},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5746462941169739},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5066242814064026},{"id":"https://openalex.org/C27881333","wikidata":"https://www.wikidata.org/wiki/Q864895","display_name":"Biotransformation","level":3,"score":0.45148521661758423},{"id":"https://openalex.org/C2778572836","wikidata":"https://www.wikidata.org/wiki/Q380933","display_name":"Space (punctuation)","level":2,"score":0.4428962767124176},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.39864397048950195},{"id":"https://openalex.org/C183696295","wikidata":"https://www.wikidata.org/wiki/Q2487696","display_name":"Biochemical engineering","level":1,"score":0.38702452182769775},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.28220662474632263},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2515990138053894},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.24483400583267212},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1096755862236023},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07798132300376892},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07426285743713379},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001688","descriptor_name":"Biological Products","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001688","descriptor_name":"Biological Products","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001688","descriptor_name":"Biological Products","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btz755","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz755","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/5/1642/32794041/btz755.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31593245","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31593245","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz755","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz755","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/5/1642/32794041/btz755.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Responsible consumption and production","id":"https://metadata.un.org/sdg/12","score":0.5199999809265137}],"awards":[{"id":"https://openalex.org/G3541897177","display_name":null,"funder_award_id":"153D31KYSB20170121","funder_id":"https://openalex.org/F4320321133","funder_display_name":"Chinese Academy of Sciences"},{"id":"https://openalex.org/G3732429493","display_name":null,"funder_award_id":"QYZDB-SSW-SMC012","funder_id":"https://openalex.org/F4320321133","funder_display_name":"Chinese Academy of Sciences"},{"id":"https://openalex.org/G8953631283","display_name":"\u57fa\u4e8e\u751f\u5316\u53cd\u5e94\u6307\u7eb9\u7279\u5f81\u7684\u9176\u6a21\u578b\u6784\u5efa","funder_award_id":"31570092","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321133","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35"},{"id":"https://openalex.org/F4320323993","display_name":"Natural Science Foundation of Tianjin City","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2979713949.pdf","grobid_xml":"https://content.openalex.org/works/W2979713949.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W2070484508","https://openalex.org/W2160592148","https://openalex.org/W2181121096","https://openalex.org/W2485621561","https://openalex.org/W2592504913","https://openalex.org/W2801661403","https://openalex.org/W2804568985","https://openalex.org/W2810023675","https://openalex.org/W2895689867","https://openalex.org/W2897524950","https://openalex.org/W2924412896"],"related_works":["https://openalex.org/W2973074952","https://openalex.org/W2594328795","https://openalex.org/W4226398544","https://openalex.org/W4383671535","https://openalex.org/W4283395020","https://openalex.org/W3183930479","https://openalex.org/W4320732452","https://openalex.org/W135095951","https://openalex.org/W4385588199","https://openalex.org/W2373828514"],"abstract_inverted_index":{"SUMMARY:":[0],"The":[1],"biosynthetic":[2,39,47,90],"ability":[3],"of":[4,109,113],"living":[5],"organisms":[6],"has":[7],"important":[8],"applications":[9],"in":[10,67,92,118],"producing":[11],"bulk":[12],"chemicals,":[13],"biofuels":[14],"and":[15,55,106],"natural":[16],"products.":[17],"Based":[18],"on":[19,81],"the":[20,33,44,62],"most":[21,45],"comprehensive":[22,46,83],"biosynthesis":[23,71,103],"knowledgebase,":[24],"a":[25,70,76,82,99,110,127],"computational":[26],"system,":[27],"BCSExplorer,":[28],"is":[29,73,140],"proposed":[30],"to":[31,121,130],"discover":[32],"unexplored":[34],"chemical":[35,78,134],"space":[36],"using":[37,98],"nature's":[38],"potential.":[40],"BCSExplorer":[41,125,139],"first":[42],"integrates":[43],"reaction":[48],"database":[49],"with":[50],"280":[51],"000":[52,57],"biochemical":[53],"reactions":[54],"60":[56],"chemicals":[58],"biosynthesized":[59],"globally":[60],"over":[61],"past":[63],"130":[64],"years.":[65],"Second,":[66],"this":[68],"study,":[69],"tree":[72],"computed":[74],"for":[75],"starting":[77],"molecule":[79],"based":[80],"biotransformation":[84],"rule":[85],"library":[86],"covering":[87],"almost":[88],"all":[89],"possibilities,":[91],"which":[93],"redundant":[94],"rules":[95],"are":[96,148],"removed":[97],"new":[100,111],"algorithm.":[101],"Moreover,":[102],"feasibility,":[104],"drug-likeness":[105],"toxicity":[107],"analysis":[108],"generation":[112],"compounds":[114],"will":[115],"be":[116],"pursued":[117],"further":[119],"studies":[120],"meet":[122],"various":[123],"needs.":[124],"represents":[126],"novel":[128],"method":[129],"explore":[131],"biosynthetically":[132],"available":[133,141,149],"space.":[135],"AVAILABILITY":[136],"AND":[137],"IMPLEMENTATION:":[138],"at:":[142],"http://www.rxnfinder.org/bcsexplorer/.":[143],"SUPPLEMENTARY":[144],"INFORMATION:":[145],"Supplementary":[146],"data":[147],"at":[150],"Bioinformatics":[151],"online.":[152]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":5},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":4}],"updated_date":"2026-06-06T09:05:17.133730","created_date":"2025-10-10T00:00:00"}
