{"id":"https://openalex.org/W2982588599","doi":"https://doi.org/10.1093/bioinformatics/btz729","title":"Towards next-generation diagnostics for tuberculosis: identification of novel molecular targets by large-scale comparative genomics","display_name":"Towards next-generation diagnostics for tuberculosis: identification of novel molecular targets by large-scale comparative genomics","publication_year":2019,"publication_date":"2019-09-26","ids":{"openalex":"https://openalex.org/W2982588599","doi":"https://doi.org/10.1093/bioinformatics/btz729","mag":"2982588599","pmid":"https://pubmed.ncbi.nlm.nih.gov/31580405"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz729","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz729","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/4/985/32527482/btz729.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/4/985/32527482/btz729.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070886231","display_name":"Galo A. Goig","orcid":"https://orcid.org/0000-0002-4136-6610"},"institutions":[{"id":"https://openalex.org/I4210106271","display_name":"Biomechanics Institute of Valencia","ror":"https://ror.org/01hn2d233","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210106271"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Galo A Goig","raw_affiliation_strings":["Tuberculosis Genomics Unit, Institute of Biomedicine of Valencia (CSIC) , Valencia 46010, Spain"],"raw_orcid":"https://orcid.org/0000-0002-4136-6610","affiliations":[{"raw_affiliation_string":"Tuberculosis Genomics Unit, Institute of Biomedicine of Valencia (CSIC) , Valencia 46010, Spain","institution_ids":["https://openalex.org/I4210106271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005148294","display_name":"Manuela Torres\u2010Puente","orcid":"https://orcid.org/0000-0002-8352-180X"},"institutions":[{"id":"https://openalex.org/I4210106271","display_name":"Biomechanics Institute of Valencia","ror":"https://ror.org/01hn2d233","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210106271"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Manuela Torres-Puente","raw_affiliation_strings":["Tuberculosis Genomics Unit, Institute of Biomedicine of Valencia (CSIC) , Valencia 46010, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tuberculosis Genomics Unit, Institute of Biomedicine of Valencia (CSIC) , Valencia 46010, Spain","institution_ids":["https://openalex.org/I4210106271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049187361","display_name":"Carla Mariner-Llicer","orcid":"https://orcid.org/0000-0002-8230-5785"},"institutions":[{"id":"https://openalex.org/I4210106271","display_name":"Biomechanics Institute of Valencia","ror":"https://ror.org/01hn2d233","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210106271"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Carla Mariner-Llicer","raw_affiliation_strings":["Tuberculosis Genomics Unit, Institute of Biomedicine of Valencia (CSIC) , Valencia 46010, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tuberculosis Genomics Unit, Institute of Biomedicine of Valencia (CSIC) , Valencia 46010, Spain","institution_ids":["https://openalex.org/I4210106271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061784491","display_name":"Luis M. Villamayor","orcid":null},"institutions":[{"id":"https://openalex.org/I4210097149","display_name":"Fundaci\u00f3n para el Fomento de la Investigaci\u00f3n Sanitaria y Biom\u00e9dica de la Comunitat Valenciana","ror":"https://ror.org/0116vew40","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210097149"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Luis M Villamayor","raw_affiliation_strings":["Genomics and Health Unit, FISABIO Public Health (CSISP) , Valencia 46035, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomics and Health Unit, FISABIO Public Health (CSISP) , Valencia 46035, Spain","institution_ids":["https://openalex.org/I4210097149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053670175","display_name":"\u00c1lvaro Chiner\u2010Oms","orcid":"https://orcid.org/0000-0002-0463-0101"},"institutions":[{"id":"https://openalex.org/I4210106271","display_name":"Biomechanics Institute of Valencia","ror":"https://ror.org/01hn2d233","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210106271"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"\u00c1lvaro Chiner-Oms","raw_affiliation_strings":["Tuberculosis Genomics Unit, Institute of Biomedicine of Valencia (CSIC) , Valencia 46010, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tuberculosis Genomics Unit, Institute of Biomedicine of Valencia (CSIC) , Valencia 46010, Spain","institution_ids":["https://openalex.org/I4210106271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061050432","display_name":"Ana Gil-Brusola","orcid":"https://orcid.org/0000-0002-4418-3676"},"institutions":[{"id":"https://openalex.org/I3019010403","display_name":"Hospital Universitari i Polit\u00e8cnic La Fe","ror":"https://ror.org/01ar2v535","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I3019010403","https://openalex.org/I4210166036"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ana Gil-Brusola","raw_affiliation_strings":["Microbiology Service, La Fe University and Polytechnic Hospital , Valencia 46026, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Microbiology Service, La Fe University and Polytechnic Hospital , Valencia 46026, Spain","institution_ids":["https://openalex.org/I3019010403"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001717647","display_name":"Rafael Borr\u00e1s","orcid":"https://orcid.org/0000-0001-5743-9768"},"institutions":[{"id":"https://openalex.org/I16097986","display_name":"Universitat de Val\u00e8ncia","ror":"https://ror.org/043nxc105","country_code":"ES","type":"education","lineage":["https://openalex.org/I16097986"]},{"id":"https://openalex.org/I4210094406","display_name":"Hospital Cl\u00ednico Universitario de Valencia","ror":"https://ror.org/00hpnj894","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210094406"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Rafael Borr\u00e1s","raw_affiliation_strings":["Microbiology Department, School of Medicine, University of Valencia , Valencia 46010, Spain","Microbiology Service, University Clinic Hospital , Valencia 46010, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Microbiology Department, School of Medicine, University of Valencia , Valencia 46010, Spain","institution_ids":["https://openalex.org/I16097986"]},{"raw_affiliation_string":"Microbiology Service, University Clinic Hospital , Valencia 46010, Spain","institution_ids":["https://openalex.org/I4210094406"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5072542589","display_name":"I\u00f1aki Comas","orcid":"https://orcid.org/0000-0001-5504-9408"},"institutions":[{"id":"https://openalex.org/I4210106271","display_name":"Biomechanics Institute of Valencia","ror":"https://ror.org/01hn2d233","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210106271"]},{"id":"https://openalex.org/I4210154894","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Epidemiolog\u00eda y Salud P\u00fablica","ror":"https://ror.org/050q0kv47","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210115082","https://openalex.org/I4210154894","https://openalex.org/I4387152914"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"I\u00f1aki Comas Espadas","raw_affiliation_strings":["CIBER in Epidemiology and Public Health , Madrid 28029, Spain","Tuberculosis Genomics Unit, Institute of Biomedicine of Valencia (CSIC) , Valencia 46010, Spain"],"raw_orcid":"https://orcid.org/0000-0001-5504-9408","affiliations":[{"raw_affiliation_string":"CIBER in Epidemiology and Public Health , Madrid 28029, Spain","institution_ids":["https://openalex.org/I4210154894"]},{"raw_affiliation_string":"Tuberculosis Genomics Unit, Institute of Biomedicine of Valencia (CSIC) , Valencia 46010, Spain","institution_ids":["https://openalex.org/I4210106271"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5072542589"],"corresponding_institution_ids":["https://openalex.org/I4210106271","https://openalex.org/I4210154894"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.0833,"has_fulltext":true,"cited_by_count":23,"citation_normalized_percentile":{"value":0.76345468,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"36","issue":"4","first_page":"985","last_page":"989"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10038","display_name":"Tuberculosis Research and Epidemiology","score":0.9254999756813049,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10038","display_name":"Tuberculosis Research and Epidemiology","score":0.9254999756813049,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11316","display_name":"Mycobacterium research and diagnosis","score":0.04089999943971634,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12578","display_name":"Diagnosis and treatment of tuberculosis","score":0.008200000040233135,"subfield":{"id":"https://openalex.org/subfields/2746","display_name":"Surgery"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mycobacterium-tuberculosis-complex","display_name":"Mycobacterium tuberculosis complex","score":0.8003686666488647},{"id":"https://openalex.org/keywords/tuberculosis","display_name":"Tuberculosis","score":0.7252309322357178},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6782594919204712},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5724048614501953},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.5504730939865112},{"id":"https://openalex.org/keywords/mycobacterium-tuberculosis","display_name":"Mycobacterium tuberculosis","score":0.5171144008636475},{"id":"https://openalex.org/keywords/molecular-diagnostics","display_name":"Molecular diagnostics","score":0.47515153884887695},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4164816737174988},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.29629063606262207},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2700737714767456},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.24437570571899414},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19587677717208862},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.10536661744117737},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0850231945514679}],"concepts":[{"id":"https://openalex.org/C2779790121","wikidata":"https://www.wikidata.org/wiki/Q5779917","display_name":"Mycobacterium tuberculosis complex","level":4,"score":0.8003686666488647},{"id":"https://openalex.org/C2781069245","wikidata":"https://www.wikidata.org/wiki/Q12204","display_name":"Tuberculosis","level":2,"score":0.7252309322357178},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6782594919204712},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5724048614501953},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5504730939865112},{"id":"https://openalex.org/C2777975735","wikidata":"https://www.wikidata.org/wiki/Q130971","display_name":"Mycobacterium tuberculosis","level":3,"score":0.5171144008636475},{"id":"https://openalex.org/C179786068","wikidata":"https://www.wikidata.org/wiki/Q16257937","display_name":"Molecular diagnostics","level":2,"score":0.47515153884887695},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4164816737174988},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.29629063606262207},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2700737714767456},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.24437570571899414},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19587677717208862},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.10536661744117737},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0850231945514679},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014376","descriptor_name":"Tuberculosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014376","descriptor_name":"Tuberculosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014376","descriptor_name":"Tuberculosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014376","descriptor_name":"Tuberculosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btz729","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz729","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/4/985/32527482/btz729.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31580405","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31580405","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7703747","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7703747","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:digital.csic.es:10261/201484","is_oa":true,"landing_page_url":"http://hdl.handle.net/10261/201484","pdf_url":null,"source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"art\u00edculo"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz729","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz729","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/4/985/32527482/btz729.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.550000011920929,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G3476416700","display_name":null,"funder_award_id":"SAF2013-43521-R","funder_id":"https://openalex.org/F4320338335","funder_display_name":"H2020 European Research Council"},{"id":"https://openalex.org/G7126022130","display_name":null,"funder_award_id":"SAF2017\u201392345\u2013EXP","funder_id":"https://openalex.org/F4320338335","funder_display_name":"H2020 European Research Council"},{"id":"https://openalex.org/G7626896175","display_name":null,"funder_award_id":"SAF2016-77346-R","funder_id":"https://openalex.org/F4320338335","funder_display_name":"H2020 European Research Council"},{"id":"https://openalex.org/G8260703390","display_name":null,"funder_award_id":"638553-TB-ACCELERATE","funder_id":"https://openalex.org/F4320338335","funder_display_name":"H2020 European Research Council"},{"id":"https://openalex.org/G8395519797","display_name":null,"funder_award_id":"BES-2014-071066","funder_id":"https://openalex.org/F4320338335","funder_display_name":"H2020 European Research Council"},{"id":"https://openalex.org/G8527227002","display_name":null,"funder_award_id":"FPU 13/00913","funder_id":"https://openalex.org/F4320338335","funder_display_name":"H2020 European Research Council"}],"funders":[{"id":"https://openalex.org/F4320338335","display_name":"H2020 European Research Council","ror":"https://ror.org/0472cxd90"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2982588599.pdf","grobid_xml":"https://content.openalex.org/works/W2982588599.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W1831135453","https://openalex.org/W1971770637","https://openalex.org/W1985986410","https://openalex.org/W2005308271","https://openalex.org/W2013106815","https://openalex.org/W2013923392","https://openalex.org/W2032019813","https://openalex.org/W2039746767","https://openalex.org/W2055043387","https://openalex.org/W2091847893","https://openalex.org/W2123266729","https://openalex.org/W2139018622","https://openalex.org/W2150390148","https://openalex.org/W2237142366","https://openalex.org/W2293502321","https://openalex.org/W2397891977","https://openalex.org/W2530396203","https://openalex.org/W2545650797","https://openalex.org/W2588634186","https://openalex.org/W2604440231","https://openalex.org/W2621659646","https://openalex.org/W2730206157","https://openalex.org/W2742532089","https://openalex.org/W2742927586","https://openalex.org/W2754089886","https://openalex.org/W2767532041","https://openalex.org/W2774092990","https://openalex.org/W2792213513","https://openalex.org/W2806169024","https://openalex.org/W2894651727","https://openalex.org/W2896693913","https://openalex.org/W2903166592","https://openalex.org/W2910432414","https://openalex.org/W2949453164","https://openalex.org/W2950657048","https://openalex.org/W2951724376","https://openalex.org/W2965520167","https://openalex.org/W6678147357"],"related_works":["https://openalex.org/W2972094210","https://openalex.org/W4308058527","https://openalex.org/W2110949356","https://openalex.org/W4210506554","https://openalex.org/W1538374398","https://openalex.org/W2050407936","https://openalex.org/W2042252940","https://openalex.org/W2411061500","https://openalex.org/W3160640465","https://openalex.org/W2394233015"],"abstract_inverted_index":{"MOTIVATION:":[0],"Tuberculosis":[1],"(TB)":[2],"remains":[3],"one":[4],"of":[5,9,17,28,37,60,76,122,133,138,152,165,171,184,194],"the":[6,26,34,58,61,73,84,130,134,139,149],"main":[7,62],"causes":[8],"death":[10],"worldwide.":[11],"The":[12,192],"long":[13],"and":[14,46,49,108,163,186],"cumbersome":[15],"process":[16],"culturing":[18],"Mycobacterium":[19],"tuberculosis":[20],"complex":[21],"(MTBC)":[22],"bacteria":[23],"has":[24,69],"encouraged":[25],"development":[27],"specific":[29,158],"molecular":[30,173],"tools":[31,39],"for":[32,57,118,161,175],"detecting":[33],"pathogen.":[35],"Most":[36],"these":[38,123],"aim":[40],"to":[41,82,98,111,128],"become":[42],"novel":[43],"TB":[44,176],"diagnostics,":[45],"big":[47],"efforts":[48],"resources":[50],"are":[51,115,207],"invested":[52],"in":[53,145,180],"their":[54,105],"development,":[55],"looking":[56],"endorsement":[59],"public":[63],"health":[64],"agencies.":[65],"Surprisingly,":[66],"no":[67],"study":[68],"been":[70],"conducted":[71],"where":[72],"vast":[74],"amount":[75],"genomic":[77],"data":[78,206],"available":[79,208],"is":[80,144],"used":[81,94,127,141,179],"identify":[83,99],"best":[85],"MTBC":[86,142,166],"diagnostic":[87,119],"markers.":[88],"RESULTS:":[89],"In":[90],"this":[91],"work,":[92,154],"we":[93,155],"large-scale":[95],"comparative":[96],"genomics":[97],"40":[100],"MTBC-specific":[101],"loci.":[102],"We":[103],"assessed":[104],"genetic":[106],"diversity":[107],"physiological":[109,131],"features":[110],"select":[112],"30":[113],"that":[114],"good":[116],"targets":[117],"purposes.":[120],"Some":[121],"markers":[124,143],"could":[125,177],"be":[126,178,199],"assess":[129],"status":[132],"bacilli.":[135],"Remarkably,":[136],"none":[137],"most":[140],"our":[146,153],"catalog.":[147],"Illustrating":[148],"translational":[150],"potential":[151],"develop":[156],"a":[157],"qPCR":[159],"assay":[160],"quantification":[162],"identification":[164],"DNA.":[167],"Our":[168],"rational":[169],"design":[170],"targeted":[172],"assays":[174],"many":[181],"other":[182],"fields":[183],"clinical":[185],"basic":[187],"research.":[188],"AVAILABILITY":[189],"AND":[190],"IMPLEMENTATION:":[191],"database":[193],"non-tuberculous":[195],"mycobacteria":[196],"assemblies":[197],"can":[198],"accessed":[200],"at:":[201],"10.5281/zenodo.3374377.":[202],"SUPPLEMENTARY":[203],"INFORMATION:":[204],"Supplementary":[205],"at":[209],"Bioinformatics":[210],"online.":[211]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":6},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":1}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
