{"id":"https://openalex.org/W2980310926","doi":"https://doi.org/10.1093/bioinformatics/btz719","title":"VISOR: a versatile haplotype-aware structural variant simulator for short- and long-read sequencing","display_name":"VISOR: a versatile haplotype-aware structural variant simulator for short- and long-read sequencing","publication_year":2019,"publication_date":"2019-10-01","ids":{"openalex":"https://openalex.org/W2980310926","doi":"https://doi.org/10.1093/bioinformatics/btz719","mag":"2980310926","pmid":"https://pubmed.ncbi.nlm.nih.gov/31589307"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz719","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz719","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/4/1267/32527687/btz719.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/4/1267/32527687/btz719.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084224233","display_name":"Davide Bolognini","orcid":"https://orcid.org/0000-0002-8735-8093"},"institutions":[{"id":"https://openalex.org/I4210138560","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/03mstc592","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I45084792","display_name":"University of Florence","ror":"https://ror.org/04jr1s763","country_code":"IT","type":"education","lineage":["https://openalex.org/I45084792"]}],"countries":["DE","IT"],"is_corresponding":true,"raw_author_name":"Davide Bolognini","raw_affiliation_strings":["Department of Experimental and Clinical Medicine, University of Florence , Florence 50134, Italy","European Molecular Biology Laboratory (EMBL) , GeneCore, Heidelberg 69917, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Experimental and Clinical Medicine, University of Florence , Florence 50134, Italy","institution_ids":["https://openalex.org/I45084792"]},{"raw_affiliation_string":"European Molecular Biology Laboratory (EMBL) , GeneCore, Heidelberg 69917, Germany","institution_ids":["https://openalex.org/I4210138560"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044232354","display_name":"Ashley D. Sanders","orcid":"https://orcid.org/0000-0003-3945-0677"},"institutions":[{"id":"https://openalex.org/I4210138560","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/03mstc592","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ashley Sanders","raw_affiliation_strings":["European Molecular Biology Laboratory (EMBL) , Genome Biology Unit, Heidelberg 69917, Germany"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory (EMBL) , Genome Biology Unit, Heidelberg 69917, Germany","institution_ids":["https://openalex.org/I4210138560"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071136927","display_name":"Jan O. Korbel","orcid":"https://orcid.org/0000-0002-2798-3794"},"institutions":[{"id":"https://openalex.org/I4210138560","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/03mstc592","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jan O Korbel","raw_affiliation_strings":["European Molecular Biology Laboratory (EMBL) , Genome Biology Unit, Heidelberg 69917, Germany"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory (EMBL) , Genome Biology Unit, Heidelberg 69917, Germany","institution_ids":["https://openalex.org/I4210138560"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017215260","display_name":"Alberto Magi","orcid":"https://orcid.org/0000-0001-7393-4283"},"institutions":[{"id":"https://openalex.org/I45084792","display_name":"University of Florence","ror":"https://ror.org/04jr1s763","country_code":"IT","type":"education","lineage":["https://openalex.org/I45084792"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alberto Magi","raw_affiliation_strings":["Department of Information Engineering, University of Florence , Florence 50134, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Information Engineering, University of Florence , Florence 50134, Italy","institution_ids":["https://openalex.org/I45084792"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048071608","display_name":"Vladim\u0131\u0301r Bene\u0161","orcid":"https://orcid.org/0000-0002-0352-2547"},"institutions":[{"id":"https://openalex.org/I4210138560","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/03mstc592","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Vladimir Benes","raw_affiliation_strings":["European Molecular Biology Laboratory (EMBL) , GeneCore, Heidelberg 69917, Germany"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory (EMBL) , GeneCore, Heidelberg 69917, Germany","institution_ids":["https://openalex.org/I4210138560"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038740400","display_name":"Tobias Rausch","orcid":"https://orcid.org/0000-0001-5773-5620"},"institutions":[{"id":"https://openalex.org/I4210138560","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/03mstc592","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tobias Rausch","raw_affiliation_strings":["European Molecular Biology Laboratory (EMBL) , GeneCore, Heidelberg 69917, Germany","European Molecular Biology Laboratory (EMBL) , Genome Biology Unit, Heidelberg 69917, Germany"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory (EMBL) , GeneCore, Heidelberg 69917, Germany","institution_ids":["https://openalex.org/I4210138560"]},{"raw_affiliation_string":"European Molecular Biology Laboratory (EMBL) , Genome Biology Unit, Heidelberg 69917, Germany","institution_ids":["https://openalex.org/I4210138560"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5084224233"],"corresponding_institution_ids":["https://openalex.org/I4210138560","https://openalex.org/I45084792"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.228,"has_fulltext":true,"cited_by_count":62,"citation_normalized_percentile":{"value":0.92141755,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"36","issue":"4","first_page":"1267","last_page":"1269"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7617988586425781},{"id":"https://openalex.org/keywords/haplotype","display_name":"Haplotype","score":0.6376358270645142},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.44895753264427185},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.28723037242889404},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12820780277252197},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11202564835548401},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09227275848388672}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7617988586425781},{"id":"https://openalex.org/C197754878","wikidata":"https://www.wikidata.org/wiki/Q80711","display_name":"Haplotype","level":4,"score":0.6376358270645142},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.44895753264427185},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.28723037242889404},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12820780277252197},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11202564835548401},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09227275848388672},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D004171","descriptor_name":"Diploidy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004171","descriptor_name":"Diploidy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004171","descriptor_name":"Diploidy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btz719","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz719","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/4/1267/32527687/btz719.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31589307","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31589307","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:edoc.mdc-berlin.de:19645","is_oa":false,"landing_page_url":"http://edoc.mdc-berlin.de/19645/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400224","display_name":"MDC Repository (Max-Delbrueck-Center for Molecular Medicine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:flore.unifi.it:2158/1179806","is_oa":false,"landing_page_url":"http://hdl.handle.net/2158/1179806","pdf_url":null,"source":{"id":"https://openalex.org/S4306402033","display_name":"Florence Research (University of Florence)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45084792","host_organization_name":"University of Florence","host_organization_lineage":["https://openalex.org/I45084792"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:zenodo.org:100859","is_oa":true,"landing_page_url":"https://www.openaccessrepository.it/record/100859","pdf_url":null,"source":{"id":"https://openalex.org/S4306402478","display_name":"INFM-OAR (INFN Catania)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210116497","host_organization_name":"Istituto Nazionale di Fisica Nucleare, Sezione di Catania","host_organization_lineage":["https://openalex.org/I4210116497"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz719","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz719","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/4/1267/32527687/btz719.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4471152221","display_name":null,"funder_award_id":"(AIRC","funder_id":"https://openalex.org/F4320323054","funder_display_name":"Associazione Italiana per la Ricerca sul Cancro"},{"id":"https://openalex.org/G5460455564","display_name":null,"funder_award_id":"20307","funder_id":"https://openalex.org/F4320323054","funder_display_name":"Associazione Italiana per la Ricerca sul Cancro"},{"id":"https://openalex.org/G552610674","display_name":null,"funder_award_id":"773026","funder_id":"https://openalex.org/F4320338335","funder_display_name":"H2020 European Research Council"}],"funders":[{"id":"https://openalex.org/F4320323054","display_name":"Associazione Italiana per la Ricerca sul Cancro","ror":"https://ror.org/02g2x7380"},{"id":"https://openalex.org/F4320338335","display_name":"H2020 European Research Council","ror":"https://ror.org/0472cxd90"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2980310926.pdf","grobid_xml":"https://content.openalex.org/works/W2980310926.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1565378970","https://openalex.org/W1973067702","https://openalex.org/W2019799676","https://openalex.org/W2038840669","https://openalex.org/W2083870688","https://openalex.org/W2103441770","https://openalex.org/W2104549677","https://openalex.org/W2108234281","https://openalex.org/W2111350087","https://openalex.org/W2117131162","https://openalex.org/W2141978199","https://openalex.org/W2146005104","https://openalex.org/W2147733682","https://openalex.org/W2150264767","https://openalex.org/W2159075303","https://openalex.org/W2165765309","https://openalex.org/W2235737683","https://openalex.org/W2613925306","https://openalex.org/W2767281692","https://openalex.org/W2782063681","https://openalex.org/W2789843538","https://openalex.org/W2895315179","https://openalex.org/W2949062400","https://openalex.org/W2949376507","https://openalex.org/W2950121474","https://openalex.org/W2950638389","https://openalex.org/W2951149781","https://openalex.org/W2951764279","https://openalex.org/W3098304617"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W3146762847","https://openalex.org/W2398263405","https://openalex.org/W2056886854","https://openalex.org/W2025446304","https://openalex.org/W2166354960","https://openalex.org/W2131321814","https://openalex.org/W1888102361"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":17},{"year":2023,"cited_by_count":12},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}