{"id":"https://openalex.org/W2978990373","doi":"https://doi.org/10.1093/bioinformatics/btz717","title":"MitoTrack, a user-friendly semi-automatic software for lineage tracking in living embryos","display_name":"MitoTrack, a user-friendly semi-automatic software for lineage tracking in living embryos","publication_year":2019,"publication_date":"2019-09-26","ids":{"openalex":"https://openalex.org/W2978990373","doi":"https://doi.org/10.1093/bioinformatics/btz717","mag":"2978990373","pmid":"https://pubmed.ncbi.nlm.nih.gov/31580394"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz717","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz717","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/4/1300/32527529/btz717.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/4/1300/32527529/btz717.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040774537","display_name":"Antonio Trullo","orcid":"https://orcid.org/0000-0001-7560-3859"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210114166","display_name":"Institut de G\u00e9n\u00e9tique Mol\u00e9culaire de Montpellier","ror":"https://ror.org/02785qs39","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210096427","https://openalex.org/I4210114166"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"A Trullo","raw_affiliation_strings":["Institut de G\u00e9n\u00e9tique Mol\u00e9culaire de Montpellier, University of Montpellier , CNRS-UMR 5535, 1919 Route de Mende, Montpellier 34293 cedex 5, France"],"raw_orcid":"https://orcid.org/0000-0001-7560-3859","affiliations":[{"raw_affiliation_string":"Institut de G\u00e9n\u00e9tique Mol\u00e9culaire de Montpellier, University of Montpellier , CNRS-UMR 5535, 1919 Route de Mende, Montpellier 34293 cedex 5, France","institution_ids":["https://openalex.org/I4210114166","https://openalex.org/I19894307","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086995227","display_name":"J\u00e9r\u00e9my Dufourt","orcid":"https://orcid.org/0000-0003-4043-7250"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210114166","display_name":"Institut de G\u00e9n\u00e9tique Mol\u00e9culaire de Montpellier","ror":"https://ror.org/02785qs39","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210096427","https://openalex.org/I4210114166"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"J Dufourt","raw_affiliation_strings":["Institut de G\u00e9n\u00e9tique Mol\u00e9culaire de Montpellier, University of Montpellier , CNRS-UMR 5535, 1919 Route de Mende, Montpellier 34293 cedex 5, France"],"raw_orcid":"https://orcid.org/0000-0003-4043-7250","affiliations":[{"raw_affiliation_string":"Institut de G\u00e9n\u00e9tique Mol\u00e9culaire de Montpellier, University of Montpellier , CNRS-UMR 5535, 1919 Route de Mende, Montpellier 34293 cedex 5, France","institution_ids":["https://openalex.org/I4210114166","https://openalex.org/I19894307","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028537170","display_name":"Mounia Lagha","orcid":"https://orcid.org/0000-0002-7082-1950"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210114166","display_name":"Institut de G\u00e9n\u00e9tique Mol\u00e9culaire de Montpellier","ror":"https://ror.org/02785qs39","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210096427","https://openalex.org/I4210114166"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"M Lagha","raw_affiliation_strings":["Institut de G\u00e9n\u00e9tique Mol\u00e9culaire de Montpellier, University of Montpellier , CNRS-UMR 5535, 1919 Route de Mende, Montpellier 34293 cedex 5, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut de G\u00e9n\u00e9tique Mol\u00e9culaire de Montpellier, University of Montpellier , CNRS-UMR 5535, 1919 Route de Mende, Montpellier 34293 cedex 5, France","institution_ids":["https://openalex.org/I4210114166","https://openalex.org/I19894307","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5028537170","https://openalex.org/A5040774537"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210114166"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.4141,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.61544878,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"36","issue":"4","first_page":"1300","last_page":"1302"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.2721000015735626,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.2721000015735626,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.09560000151395798,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.09390000253915787,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7450057864189148},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.7175135612487793},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.6833513975143433},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.6825098991394043},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.4911050796508789},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.3657625913619995},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.34732717275619507}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7450057864189148},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.7175135612487793},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.6833513975143433},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.6825098991394043},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.4911050796508789},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.3657625913619995},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.34732717275619507}],"mesh":[{"descriptor_ui":"D002467","descriptor_name":"Cell Nucleus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002467","descriptor_name":"Cell Nucleus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002467","descriptor_name":"Cell Nucleus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btz717","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz717","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/4/1300/32527529/btz717.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31580394","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31580394","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:hal-02323595v1","is_oa":false,"landing_page_url":"https://hal.science/hal-02323595","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2019, &#x27E8;10.1093/bioinformatics/btz717&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7703790","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7703790","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz717","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz717","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/4/1300/32527529/btz717.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4000000059604645,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2978990373.pdf"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W2006328220","https://openalex.org/W2015159529","https://openalex.org/W2030233281","https://openalex.org/W2128043711","https://openalex.org/W2133059825","https://openalex.org/W2142275632","https://openalex.org/W2202141609","https://openalex.org/W2529052661","https://openalex.org/W2794743428","https://openalex.org/W2886822966","https://openalex.org/W2896701276","https://openalex.org/W2902773595","https://openalex.org/W2967335528"],"related_works":["https://openalex.org/W4240625990","https://openalex.org/W3162170176","https://openalex.org/W1608278265","https://openalex.org/W2993198389","https://openalex.org/W2102284328","https://openalex.org/W3180179400","https://openalex.org/W2118366689","https://openalex.org/W2154998455","https://openalex.org/W2048990642","https://openalex.org/W2116888309"],"abstract_inverted_index":{"MOTIVATION:":[0],"During":[1],"development,":[2],"progenitor":[3],"cells":[4],"undergo":[5],"multiple":[6],"rounds":[7],"of":[8,22,34,37,46,90,95,106],"cellular":[9],"divisions":[10],"during":[11],"which":[12,25],"transcriptional":[13,23,47,96],"programs":[14],"must":[15],"be":[16],"faithfully":[17],"propagated.":[18],"Investigating":[19],"the":[20,32,63,70,86,92,117],"timing":[21,94],"activation,":[24,48],"is":[26,78,131],"a":[27,51,79,107,139],"highly":[28],"stochastic":[29],"phenomenon,":[30],"requires":[31],"analysis":[33,45],"large":[35,60],"amounts":[36],"data.":[38],"In":[39],"order":[40],"to":[41,69,119],"perform":[42],"automatic":[43],"image":[44],"we":[49],"developed":[50],"software":[52,83,112],"that":[53,84],"segments":[54],"and":[55,59,123],"tracks":[56],"both":[57],"small":[58],"objects,":[61],"leading":[62],"user":[64,141],"from":[65],"raw":[66],"data":[67,148],"up":[68],"results":[71],"in":[72],"their":[73],"final":[74],"form.":[75],"RESULTS:":[76],"MitoTrack":[77,130],"user-friendly":[80],"open-access":[81],"integrated":[82],"performs":[85],"specific":[87],"dual":[88],"task":[89],"reporting":[91],"precise":[93],"activation":[97],"while":[98],"keeping":[99],"lineage":[100],"tree":[101],"history":[102],"for":[103],"each":[104,125],"nucleus":[105],"living":[108],"developing":[109],"embryo.":[110],"The":[111],"works":[113],"automatically":[114],"but":[115],"provides":[116],"possibility":[118],"easily":[120],"supervise,":[121],"correct":[122],"validate":[124],"step.":[126],"AVAILABILITY":[127],"AND":[128],"IMPLEMENTATION:":[129],"an":[132],"open":[133],"source":[134],"Python":[135],"software,":[136],"embedded":[137],"within":[138],"graphical":[140],"interface":[142],"(download":[143],"here).":[144],"SUPPLEMENTARY":[145],"INFORMATION:":[146],"Supplementary":[147],"are":[149],"available":[150],"at":[151],"Bioinformatics":[152],"online.":[153]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":4}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
