{"id":"https://openalex.org/W2974793743","doi":"https://doi.org/10.1093/bioinformatics/btz711","title":"Chordomics: a visualization tool for linking function to phylogeny in microbiomes","display_name":"Chordomics: a visualization tool for linking function to phylogeny in microbiomes","publication_year":2019,"publication_date":"2019-09-16","ids":{"openalex":"https://openalex.org/W2974793743","doi":"https://doi.org/10.1093/bioinformatics/btz711","mag":"2974793743","pmid":"https://pubmed.ncbi.nlm.nih.gov/31539022"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz711","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz711","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/4/1309/32527533/btz711.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/4/1309/32527533/btz711.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051463129","display_name":"Kevin Mcdonnell","orcid":"https://orcid.org/0000-0002-3428-8239"},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Kevin McDonnell","raw_affiliation_strings":["Department of Information Technology, School of Computer Science , National University of Ireland Galway, Galway, Ireland","Functional Environmental Microbiology, School of Natural Sciences , Ryan Institute, Galway, Ireland"],"affiliations":[{"raw_affiliation_string":"Department of Information Technology, School of Computer Science , National University of Ireland Galway, Galway, Ireland","institution_ids":["https://openalex.org/I188760350"]},{"raw_affiliation_string":"Functional Environmental Microbiology, School of Natural Sciences , Ryan Institute, Galway, Ireland","institution_ids":["https://openalex.org/I188760350"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053582968","display_name":"Nicholas R. Waters","orcid":"https://orcid.org/0000-0002-9035-2143"},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]},{"id":"https://openalex.org/I15477984","display_name":"James Hutton Institute","ror":"https://ror.org/03rzp5127","country_code":"GB","type":"funder","lineage":["https://openalex.org/I15477984"]}],"countries":["GB","IE"],"is_corresponding":false,"raw_author_name":"Nicholas Waters","raw_affiliation_strings":["Functional Environmental Microbiology, School of Natural Sciences , Ryan Institute, Galway, Ireland","Information and Computational Sciences, James Hutton Institute, Invergowrie , Dundee DD2 5DA, UK"],"affiliations":[{"raw_affiliation_string":"Functional Environmental Microbiology, School of Natural Sciences , Ryan Institute, Galway, Ireland","institution_ids":["https://openalex.org/I188760350"]},{"raw_affiliation_string":"Information and Computational Sciences, James Hutton Institute, Invergowrie , Dundee DD2 5DA, UK","institution_ids":["https://openalex.org/I15477984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074452240","display_name":"Enda Howley","orcid":"https://orcid.org/0000-0003-2687-4630"},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Enda Howley","raw_affiliation_strings":["Department of Information Technology, School of Computer Science , National University of Ireland Galway, Galway, Ireland"],"affiliations":[{"raw_affiliation_string":"Department of Information Technology, School of Computer Science , National University of Ireland Galway, Galway, Ireland","institution_ids":["https://openalex.org/I188760350"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018497012","display_name":"Florence Abram","orcid":"https://orcid.org/0000-0001-7522-9158"},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]}],"countries":["IE"],"is_corresponding":true,"raw_author_name":"Florence Abram","raw_affiliation_strings":["Functional Environmental Microbiology, School of Natural Sciences , Ryan Institute, Galway, Ireland"],"affiliations":[{"raw_affiliation_string":"Functional Environmental Microbiology, School of Natural Sciences , Ryan Institute, Galway, Ireland","institution_ids":["https://openalex.org/I188760350"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5018497012"],"corresponding_institution_ids":["https://openalex.org/I188760350"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.3406,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.65691281,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":"36","issue":"4","first_page":"1309","last_page":"1310"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9839000105857849,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9839000105857849,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.963100016117096,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9433000087738037,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.7685225605964661},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7636449337005615},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.6284329891204834},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5453181266784668},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.517296552658081},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.48063960671424866},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.44523224234580994},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.4172663986682892},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2586762309074402},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.19383162260055542},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1857527792453766},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.05683514475822449}],"concepts":[{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.7685225605964661},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7636449337005615},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.6284329891204834},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5453181266784668},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.517296552658081},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.48063960671424866},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.44523224234580994},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.4172663986682892},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2586762309074402},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.19383162260055542},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1857527792453766},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.05683514475822449}],"mesh":[{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btz711","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz711","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/4/1309/32527533/btz711.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31539022","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31539022","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz711","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz711","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/4/1309/32527533/btz711.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.5899999737739563,"display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2974793743.pdf","grobid_xml":"https://content.openalex.org/works/W2974793743.grobid-xml"},"referenced_works_count":6,"referenced_works":["https://openalex.org/W1989348205","https://openalex.org/W2110768797","https://openalex.org/W2135415614","https://openalex.org/W2175951962","https://openalex.org/W2179653678","https://openalex.org/W2595030945"],"related_works":["https://openalex.org/W2604155846","https://openalex.org/W3121185202","https://openalex.org/W2068608913","https://openalex.org/W4390658901","https://openalex.org/W2900546243","https://openalex.org/W1923231248","https://openalex.org/W2383763250","https://openalex.org/W248275141","https://openalex.org/W1530905560","https://openalex.org/W2518331723"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
