{"id":"https://openalex.org/W2971405760","doi":"https://doi.org/10.1093/bioinformatics/btz699","title":"Protein\u2013protein interaction site prediction through combining local and global features with deep neural networks","display_name":"Protein\u2013protein interaction site prediction through combining local and global features with deep neural networks","publication_year":2019,"publication_date":"2019-09-04","ids":{"openalex":"https://openalex.org/W2971405760","doi":"https://doi.org/10.1093/bioinformatics/btz699","mag":"2971405760","pmid":"https://pubmed.ncbi.nlm.nih.gov/31593229"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz699","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz699","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/4/1114/32527561/btz699.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/4/1114/32527561/btz699.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033885404","display_name":"Min Zeng","orcid":"https://orcid.org/0000-0002-1726-0955"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Min Zeng","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University , Changsha 410083, People\u2019s Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , Changsha 410083, People\u2019s Republic of China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032947862","display_name":"Fuhao Zhang","orcid":"https://orcid.org/0000-0002-5339-0714"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fuhao Zhang","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University , Changsha 410083, People\u2019s Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , Changsha 410083, People\u2019s Republic of China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091157395","display_name":"Fang\u2010Xiang Wu","orcid":"https://orcid.org/0000-0002-4593-9332"},"institutions":[{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Fang-Xiang Wu","raw_affiliation_strings":["Division of Biomedical Engineering and Department of Mechanical Engineering, University of Saskatchewan , Saskatoon SKS7N5A9, Canada"],"raw_orcid":"https://orcid.org/0000-0002-4593-9332","affiliations":[{"raw_affiliation_string":"Division of Biomedical Engineering and Department of Mechanical Engineering, University of Saskatchewan , Saskatoon SKS7N5A9, Canada","institution_ids":["https://openalex.org/I32625721"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079316675","display_name":"Yaohang Li","orcid":"https://orcid.org/0000-0003-0178-1876"},"institutions":[{"id":"https://openalex.org/I81365321","display_name":"Old Dominion University","ror":"https://ror.org/04zjtrb98","country_code":"US","type":"education","lineage":["https://openalex.org/I81365321"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yaohang Li","raw_affiliation_strings":["Department of Computer Science, Old Dominion University , Norfolk, VA 23529, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Old Dominion University , Norfolk, VA 23529, USA","institution_ids":["https://openalex.org/I81365321"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100438360","display_name":"Jianxin Wang","orcid":"https://orcid.org/0000-0003-1516-0480"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianxin Wang","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University , Changsha 410083, People\u2019s Republic of China"],"raw_orcid":"https://orcid.org/0000-0003-1516-0480","affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , Changsha 410083, People\u2019s Republic of China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100719013","display_name":"Min Li","orcid":"https://orcid.org/0000-0002-0188-1394"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Min Li","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University , Changsha 410083, People\u2019s Republic of China"],"raw_orcid":"https://orcid.org/0000-0002-0188-1394","affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , Changsha 410083, People\u2019s Republic of China","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5100719013"],"corresponding_institution_ids":["https://openalex.org/I139660479"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":9.7078,"has_fulltext":true,"cited_by_count":297,"citation_normalized_percentile":{"value":0.98897073,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"36","issue":"4","first_page":"1114","last_page":"1120"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.5791000127792358,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.5791000127792358,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.21789999306201935,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.1550000011920929,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7542324066162109},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.6845579743385315},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6391767263412476},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.609342098236084},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5938031673431396},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.5424036383628845},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5331921577453613},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.48300325870513916},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.4666217565536499},{"id":"https://openalex.org/keywords/sliding-window-protocol","display_name":"Sliding window protocol","score":0.4665156602859497},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.42372068762779236},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.19904452562332153},{"id":"https://openalex.org/keywords/window","display_name":"Window (computing)","score":0.18954509496688843},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10624930262565613}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7542324066162109},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.6845579743385315},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6391767263412476},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.609342098236084},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5938031673431396},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.5424036383628845},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5331921577453613},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.48300325870513916},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.4666217565536499},{"id":"https://openalex.org/C102392041","wikidata":"https://www.wikidata.org/wiki/Q592860","display_name":"Sliding window protocol","level":3,"score":0.4665156602859497},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.42372068762779236},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.19904452562332153},{"id":"https://openalex.org/C2778751112","wikidata":"https://www.wikidata.org/wiki/Q835016","display_name":"Window (computing)","level":2,"score":0.18954509496688843},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10624930262565613},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btz699","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz699","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/4/1114/32527561/btz699.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31593229","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31593229","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz699","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz699","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/4/1114/32527561/btz699.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.4300000071525574}],"awards":[{"id":"https://openalex.org/G1474490597","display_name":null,"funder_award_id":"111 Project","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1545673320","display_name":null,"funder_award_id":"502221903","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G2200415815","display_name":null,"funder_award_id":"B18059, G20190018001","funder_id":"https://openalex.org/F4320327912","funder_display_name":"Higher Education Discipline Innovation Project"},{"id":"https://openalex.org/G2892123850","display_name":null,"funder_award_id":"G20190018001","funder_id":"https://openalex.org/F4320327912","funder_display_name":"Higher Education Discipline Innovation Project"},{"id":"https://openalex.org/G3172075892","display_name":null,"funder_award_id":"61622213 and 61728211","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3328780670","display_name":null,"funder_award_id":"61728211","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4043378463","display_name":null,"funder_award_id":"61832019","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4066238608","display_name":null,"funder_award_id":"B18059","funder_id":"https://openalex.org/F4320327912","funder_display_name":"Higher Education Discipline Innovation Project"},{"id":"https://openalex.org/G7631435625","display_name":null,"funder_award_id":"B18059","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8210156615","display_name":null,"funder_award_id":"61622213","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8215791582","display_name":null,"funder_award_id":"G20190018001","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8792783589","display_name":null,"funder_award_id":"61832019, 61622213 and 61728211","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320311096","display_name":"Virginia Commonwealth University","ror":"https://ror.org/02nkdxk79"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321514","display_name":"Central South University","ror":"https://ror.org/00f1zfq44"},{"id":"https://openalex.org/F4320327912","display_name":"Higher Education Discipline Innovation Project","ror":null},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2971405760.pdf","grobid_xml":"https://content.openalex.org/works/W2971405760.grobid-xml"},"referenced_works_count":50,"referenced_works":["https://openalex.org/W1483099488","https://openalex.org/W1877203705","https://openalex.org/W1943262974","https://openalex.org/W1973231190","https://openalex.org/W1976229976","https://openalex.org/W1976937534","https://openalex.org/W2000093524","https://openalex.org/W2010022403","https://openalex.org/W2012852001","https://openalex.org/W2031918459","https://openalex.org/W2038403313","https://openalex.org/W2044359120","https://openalex.org/W2046407284","https://openalex.org/W2050526879","https://openalex.org/W2057813163","https://openalex.org/W2073229442","https://openalex.org/W2088038235","https://openalex.org/W2096119514","https://openalex.org/W2103485392","https://openalex.org/W2133591516","https://openalex.org/W2136832587","https://openalex.org/W2139262886","https://openalex.org/W2141627824","https://openalex.org/W2144162005","https://openalex.org/W2155194485","https://openalex.org/W2166663852","https://openalex.org/W2166814967","https://openalex.org/W2170835800","https://openalex.org/W2211387173","https://openalex.org/W2283929195","https://openalex.org/W2392351795","https://openalex.org/W2570083522","https://openalex.org/W2722005050","https://openalex.org/W2754800853","https://openalex.org/W2793303269","https://openalex.org/W2799487719","https://openalex.org/W2803920401","https://openalex.org/W2891614933","https://openalex.org/W2907063321","https://openalex.org/W2911960890","https://openalex.org/W2912802963","https://openalex.org/W2915554882","https://openalex.org/W2932454681","https://openalex.org/W2935275081","https://openalex.org/W2955690154","https://openalex.org/W4246490694","https://openalex.org/W6696048330","https://openalex.org/W6749466839","https://openalex.org/W6754393984","https://openalex.org/W6759634035"],"related_works":["https://openalex.org/W2353818951","https://openalex.org/W4293226380","https://openalex.org/W4375867731","https://openalex.org/W2385763735","https://openalex.org/W4226493464","https://openalex.org/W4312417841","https://openalex.org/W3193565141","https://openalex.org/W3133861977","https://openalex.org/W3167935049","https://openalex.org/W3029198973"],"abstract_inverted_index":{"MOTIVATION:":[0],"Protein-protein":[1],"interactions":[2],"(PPIs)":[3],"play":[4,187],"important":[5,188],"roles":[6,189],"in":[7,100,167,178,190],"many":[8,23],"biological":[9,12],"processes.":[10],"Conventional":[11],"experiments":[13],"for":[14,53,76],"identifying":[15],"PPI":[16,31,43,54,77,134],"sites":[17],"are":[18,51,130,165,215],"costly":[19],"and":[20,70,126,140],"time-consuming.":[21],"Thus,":[22],"computational":[24,34],"approaches":[25],"have":[26],"been":[27],"proposed":[28,75],"to":[29,41,89,114,132,159],"predict":[30,42,133],"sites.":[32,44,135],"Existing":[33],"methods":[35],"usually":[36],"use":[37,85],"local":[38,68,81,124,138],"contextual":[39,69,82,125,139],"features":[40,47,91,116,129,164,186],"Actually,":[45],"global":[46,71,104,127,141,162,184],"of":[48,92,94],"protein":[49,120],"sequences":[50],"critical":[52],"site":[55,78],"prediction.":[56,79],"RESULTS:":[57],"A":[58],"new":[59],"end-to-end":[60],"deep":[61,169],"learning":[62,170],"framework,":[63],"named":[64],"DeepPPISP,":[65],"through":[66],"combining":[67],"sequence":[72,105,128,142,163,185],"features,":[73,83,106,143],"is":[74,112,150,199],"For":[80,103],"we":[84,172],"a":[86,95,107],"sliding":[87],"window":[88],"capture":[90],"neighbors":[93],"target":[96],"amino":[97],"acid":[98],"as":[99],"previous":[101],"studies.":[102],"text":[108],"convolutional":[109],"neural":[110],"network":[111],"applied":[113],"extract":[115],"from":[117,209],"the":[118,123,146,153],"whole":[119],"sequence.":[121],"Then":[122],"combined":[131],"By":[136],"integrating":[137],"DeepPPISP":[144,196],"achieves":[145],"state-of-the-art":[147],"performance,":[148],"which":[149],"better":[151],"than":[152],"other":[154],"competing":[155],"methods.":[156],"In":[157],"order":[158],"investigate":[160],"if":[161],"helpful":[166],"our":[168],"model,":[171],"remove":[173],"or":[174],"change":[175],"some":[176],"components":[177],"DeepPPISP.":[179,191],"Detailed":[180],"analyses":[181],"show":[182],"that":[183],"AVAILABILITY":[192],"AND":[193],"IMPLEMENTATION:":[194],"The":[195,203],"web":[197],"server":[198],"available":[200,216],"at":[201,217],"http://bioinformatics.csu.edu.cn/PPISP/.":[202],"source":[204],"code":[205],"can":[206],"be":[207],"obtained":[208],"https://github.com/CSUBioGroup/DeepPPISP.":[210],"SUPPLEMENTARY":[211],"INFORMATION:":[212],"Supplementary":[213],"data":[214],"Bioinformatics":[218],"online.":[219]},"counts_by_year":[{"year":2026,"cited_by_count":15},{"year":2025,"cited_by_count":58},{"year":2024,"cited_by_count":54},{"year":2023,"cited_by_count":42},{"year":2022,"cited_by_count":52},{"year":2021,"cited_by_count":48},{"year":2020,"cited_by_count":25},{"year":2019,"cited_by_count":3}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
