{"id":"https://openalex.org/W2971913078","doi":"https://doi.org/10.1093/bioinformatics/btz688","title":"CroP\u2014Coordinated Panel visualization for biological networks analysis","display_name":"CroP\u2014Coordinated Panel visualization for biological networks analysis","publication_year":2019,"publication_date":"2019-08-30","ids":{"openalex":"https://openalex.org/W2971913078","doi":"https://doi.org/10.1093/bioinformatics/btz688","mag":"2971913078","pmid":"https://pubmed.ncbi.nlm.nih.gov/31504214"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz688","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz688","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/4/1298/32527806/btz688.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/4/1298/32527806/btz688.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036385911","display_name":"Ant\u00f3nio Cruz","orcid":"https://orcid.org/0000-0001-9812-5781"},"institutions":[{"id":"https://openalex.org/I76903346","display_name":"University of Coimbra","ror":"https://ror.org/04z8k9a98","country_code":"PT","type":"education","lineage":["https://openalex.org/I76903346"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"Ant\u00f3nio Cruz","raw_affiliation_strings":["CISUC, Department of Informatics Engineering, University of Coimbra , Coimbra 3030-290, Portugal"],"raw_orcid":"https://orcid.org/0000-0001-9812-5781","affiliations":[{"raw_affiliation_string":"CISUC, Department of Informatics Engineering, University of Coimbra , Coimbra 3030-290, Portugal","institution_ids":["https://openalex.org/I76903346"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035863026","display_name":"Penousal Machado","orcid":"https://orcid.org/0000-0002-6308-6484"},"institutions":[{"id":"https://openalex.org/I76903346","display_name":"University of Coimbra","ror":"https://ror.org/04z8k9a98","country_code":"PT","type":"education","lineage":["https://openalex.org/I76903346"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Penousal Machado","raw_affiliation_strings":["CISUC, Department of Informatics Engineering, University of Coimbra , Coimbra 3030-290, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CISUC, Department of Informatics Engineering, University of Coimbra , Coimbra 3030-290, Portugal","institution_ids":["https://openalex.org/I76903346"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043572862","display_name":"Joel P. Arrais","orcid":"https://orcid.org/0000-0003-4937-2334"},"institutions":[{"id":"https://openalex.org/I76903346","display_name":"University of Coimbra","ror":"https://ror.org/04z8k9a98","country_code":"PT","type":"education","lineage":["https://openalex.org/I76903346"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Joel P Arrais","raw_affiliation_strings":["CISUC, Department of Informatics Engineering, University of Coimbra , Coimbra 3030-290, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CISUC, Department of Informatics Engineering, University of Coimbra , Coimbra 3030-290, Portugal","institution_ids":["https://openalex.org/I76903346"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5036385911"],"corresponding_institution_ids":["https://openalex.org/I76903346"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.2978,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.60173294,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"36","issue":"4","first_page":"1298","last_page":"1299"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.39899998903274536,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.39899998903274536,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.39169999957084656,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.03920000046491623,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/executable","display_name":"Executable","score":0.8194236755371094},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.8133383393287659},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7326824069023132},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.7303282022476196},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5744227170944214},{"id":"https://openalex.org/keywords/download","display_name":"Download","score":0.5106096863746643},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.474504679441452},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.46188563108444214},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.20314669609069824},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.10833647847175598},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08506080508232117}],"concepts":[{"id":"https://openalex.org/C160145156","wikidata":"https://www.wikidata.org/wiki/Q778586","display_name":"Executable","level":2,"score":0.8194236755371094},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.8133383393287659},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7326824069023132},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.7303282022476196},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5744227170944214},{"id":"https://openalex.org/C2780154274","wikidata":"https://www.wikidata.org/wiki/Q7126717","display_name":"Download","level":2,"score":0.5106096863746643},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.474504679441452},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.46188563108444214},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.20314669609069824},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.10833647847175598},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08506080508232117}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btz688","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz688","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/4/1298/32527806/btz688.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31504214","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31504214","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz688","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz688","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/4/1298/32527806/btz688.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1516346500","display_name":null,"funder_award_id":"01-0145","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G659236921","display_name":null,"funder_award_id":"CENTRO-01-0145-FEDER-029266","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G8819135387","display_name":null,"funder_award_id":"SFRH/BD/124538/2016","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"}],"funders":[{"id":"https://openalex.org/F4320334779","display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","ror":"https://ror.org/00snfqn58"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2971913078.pdf","grobid_xml":"https://content.openalex.org/works/W2971913078.grobid-xml"},"referenced_works_count":6,"referenced_works":["https://openalex.org/W38619841","https://openalex.org/W1992419399","https://openalex.org/W2150231912","https://openalex.org/W2793958847","https://openalex.org/W6601609194","https://openalex.org/W6750304857"],"related_works":["https://openalex.org/W4225274103","https://openalex.org/W2013728941","https://openalex.org/W2154046714","https://openalex.org/W2579659702","https://openalex.org/W2189613078","https://openalex.org/W1574055964","https://openalex.org/W2923661510","https://openalex.org/W3003759491","https://openalex.org/W2542318691","https://openalex.org/W2547096368"],"abstract_inverted_index":{"SUMMARY:":[0],"CroP":[1,39,122,143],"is":[2,40,84,144],"a":[3,115],"data":[4,14,91],"visualization":[5,58,82],"application":[6],"that":[7,15,66],"focuses":[8],"on":[9],"the":[10,26,71,79],"analysis":[11],"of":[12,90,110,125,138],"relational":[13],"changes":[16],"over":[17],"time.":[18],"While":[19],"it":[20,83,113],"was":[21],"specifically":[22],"designed":[23],"for":[24,119,147],"addressing":[25],"preeminent":[27],"need":[28],"to":[29,42,69,73,86,128,132],"interpret":[30],"large":[31],"scale":[32],"time":[33,80],"series":[34],"from":[35,45,135],"gene":[36,120],"expression":[37],"studies,":[38],"prepared":[41],"analyze":[43],"datasets":[44,49],"multiple":[46],"contexts.":[47],"Multiple":[48],"can":[50],"be":[51,124],"uploaded":[52],"simultaneously":[53],"and":[54,78],"viewed":[55],"through":[56],"dynamic":[57],"models,":[59],"which":[60],"are":[61],"contained":[62],"within":[63],"flexible":[64],"panels":[65],"allow":[67],"users":[68],"adapt":[70],"workspace":[72],"their":[74],"data.":[75,139],"Through":[76],"clustering":[77],"curve":[81],"possible":[85],"quickly":[87],"identify":[88],"groups":[89],"points":[92],"with":[93],"similar":[94],"proprieties":[95],"or":[96],"behaviors,":[97],"as":[98,100,107,149],"well":[99],"temporal":[101],"patterns":[102],"across":[103],"all":[104],"points,":[105],"such":[106],"periodic":[108],"waves":[109],"expression.":[111],"Additionally,":[112],"integrates":[114],"public":[116],"biomedical":[117],"database":[118],"annotation.":[121],"will":[123],"major":[126],"interest":[127],"biologists":[129],"who":[130],"seek":[131],"extract":[133],"relations":[134],"complex":[136],"sets":[137],"AVAILABILITY":[140],"AND":[141],"IMPLEMENTATION:":[142],"freely":[145],"available":[146],"download":[148],"an":[150],"executable":[151],"jar":[152],"at":[153],"https://cdv.dei.uc.pt/crop/.":[154]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
