{"id":"https://openalex.org/W2972173831","doi":"https://doi.org/10.1093/bioinformatics/btz683","title":"EpiGraph: an open-source platform to quantify epithelial organization","display_name":"EpiGraph: an open-source platform to quantify epithelial organization","publication_year":2019,"publication_date":"2019-08-29","ids":{"openalex":"https://openalex.org/W2972173831","doi":"https://doi.org/10.1093/bioinformatics/btz683","mag":"2972173831","pmid":"https://pubmed.ncbi.nlm.nih.gov/31544932"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz683","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz683","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1093/bioinformatics/btz683","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089406709","display_name":"Pablo Vicente\u2010Munuera","orcid":"https://orcid.org/0000-0001-5402-7637"},"institutions":[{"id":"https://openalex.org/I4210086696","display_name":"Biomedical Research Networking Center on Neurodegenerative Diseases","ror":"https://ror.org/00zca7903","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210086696"]},{"id":"https://openalex.org/I4210133602","display_name":"Instituto de Biomedicina de Sevilla","ror":"https://ror.org/031zwx660","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I158283456","https://openalex.org/I4210133602","https://openalex.org/I79238269","https://openalex.org/I918821925"]},{"id":"https://openalex.org/I4210153139","display_name":"Hospital Universitario Virgen del Roc\u00edo","ror":"https://ror.org/04vfhnm78","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210153139"]},{"id":"https://openalex.org/I79238269","display_name":"Universidad de Sevilla","ror":"https://ror.org/03yxnpp24","country_code":"ES","type":"education","lineage":["https://openalex.org/I79238269"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Pablo Vicente-Munuera","raw_affiliation_strings":["Biomedical Network Research Centre on Neurodegenerative Diseases (CIBERNED) , Madrid 28031, Spain","Instituto de Biomedicina de Sevilla (IBiS), Hospital Universitario Virgen del Roc\u00edo/CSIC/Universidad de Sevilla and Departamento de Biolog\u00eda Celular, Universidad de Sevilla , Seville 41013, Spain"],"raw_orcid":"https://orcid.org/0000-0001-5402-7637","affiliations":[{"raw_affiliation_string":"Biomedical Network Research Centre on Neurodegenerative Diseases (CIBERNED) , Madrid 28031, Spain","institution_ids":["https://openalex.org/I4210086696"]},{"raw_affiliation_string":"Instituto de Biomedicina de Sevilla (IBiS), Hospital Universitario Virgen del Roc\u00edo/CSIC/Universidad de Sevilla and Departamento de Biolog\u00eda Celular, Universidad de Sevilla , Seville 41013, Spain","institution_ids":["https://openalex.org/I4210133602","https://openalex.org/I4210153139","https://openalex.org/I79238269"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082334992","display_name":"Pedro G\u00f3mez\u2010G\u00e1lvez","orcid":"https://orcid.org/0000-0002-0509-227X"},"institutions":[{"id":"https://openalex.org/I4210086696","display_name":"Biomedical Research Networking Center on Neurodegenerative Diseases","ror":"https://ror.org/00zca7903","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210086696"]},{"id":"https://openalex.org/I4210133602","display_name":"Instituto de Biomedicina de Sevilla","ror":"https://ror.org/031zwx660","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I158283456","https://openalex.org/I4210133602","https://openalex.org/I79238269","https://openalex.org/I918821925"]},{"id":"https://openalex.org/I4210153139","display_name":"Hospital Universitario Virgen del Roc\u00edo","ror":"https://ror.org/04vfhnm78","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210153139"]},{"id":"https://openalex.org/I79238269","display_name":"Universidad de Sevilla","ror":"https://ror.org/03yxnpp24","country_code":"ES","type":"education","lineage":["https://openalex.org/I79238269"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Pedro G\u00f3mez-G\u00e1lvez","raw_affiliation_strings":["Biomedical Network Research Centre on Neurodegenerative Diseases (CIBERNED) , Madrid 28031, Spain","Instituto de Biomedicina de Sevilla (IBiS), Hospital Universitario Virgen del Roc\u00edo/CSIC/Universidad de Sevilla and Departamento de Biolog\u00eda Celular, Universidad de Sevilla , Seville 41013, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomedical Network Research Centre on Neurodegenerative Diseases (CIBERNED) , Madrid 28031, Spain","institution_ids":["https://openalex.org/I4210086696"]},{"raw_affiliation_string":"Instituto de Biomedicina de Sevilla (IBiS), Hospital Universitario Virgen del Roc\u00edo/CSIC/Universidad de Sevilla and Departamento de Biolog\u00eda Celular, Universidad de Sevilla , Seville 41013, Spain","institution_ids":["https://openalex.org/I4210133602","https://openalex.org/I4210153139","https://openalex.org/I79238269"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057144160","display_name":"Robert J. Tetley","orcid":"https://orcid.org/0000-0002-3322-6271"},"institutions":[{"id":"https://openalex.org/I4210093127","display_name":"MRC Laboratory for Molecular Cell Biology","ror":"https://ror.org/00fv61j67","country_code":"GB","type":"facility","lineage":["https://openalex.org/I124357947","https://openalex.org/I4210087105","https://openalex.org/I4210093127","https://openalex.org/I45129253","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Robert J Tetley","raw_affiliation_strings":["MRC Laboratory for Molecular Cell Biology, University College London , London WC1E 6BT, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MRC Laboratory for Molecular Cell Biology, University College London , London WC1E 6BT, UK","institution_ids":["https://openalex.org/I4210093127","https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029983263","display_name":"Cristina Forja","orcid":null},"institutions":[{"id":"https://openalex.org/I4210133602","display_name":"Instituto de Biomedicina de Sevilla","ror":"https://ror.org/031zwx660","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I158283456","https://openalex.org/I4210133602","https://openalex.org/I79238269","https://openalex.org/I918821925"]},{"id":"https://openalex.org/I4210153139","display_name":"Hospital Universitario Virgen del Roc\u00edo","ror":"https://ror.org/04vfhnm78","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210153139"]},{"id":"https://openalex.org/I79238269","display_name":"Universidad de Sevilla","ror":"https://ror.org/03yxnpp24","country_code":"ES","type":"education","lineage":["https://openalex.org/I79238269"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Cristina Forja","raw_affiliation_strings":["Instituto de Biomedicina de Sevilla (IBiS), Hospital Universitario Virgen del Roc\u00edo/CSIC/Universidad de Sevilla and Departamento de Biolog\u00eda Celular, Universidad de Sevilla , Seville 41013, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto de Biomedicina de Sevilla (IBiS), Hospital Universitario Virgen del Roc\u00edo/CSIC/Universidad de Sevilla and Departamento de Biolog\u00eda Celular, Universidad de Sevilla , Seville 41013, Spain","institution_ids":["https://openalex.org/I4210133602","https://openalex.org/I4210153139","https://openalex.org/I79238269"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010493439","display_name":"Antonio Tagua","orcid":"https://orcid.org/0000-0001-5743-2400"},"institutions":[{"id":"https://openalex.org/I4210086696","display_name":"Biomedical Research Networking Center on Neurodegenerative Diseases","ror":"https://ror.org/00zca7903","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210086696"]},{"id":"https://openalex.org/I4210133602","display_name":"Instituto de Biomedicina de Sevilla","ror":"https://ror.org/031zwx660","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I158283456","https://openalex.org/I4210133602","https://openalex.org/I79238269","https://openalex.org/I918821925"]},{"id":"https://openalex.org/I4210153139","display_name":"Hospital Universitario Virgen del Roc\u00edo","ror":"https://ror.org/04vfhnm78","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210153139"]},{"id":"https://openalex.org/I79238269","display_name":"Universidad de Sevilla","ror":"https://ror.org/03yxnpp24","country_code":"ES","type":"education","lineage":["https://openalex.org/I79238269"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Antonio Tagua","raw_affiliation_strings":["Biomedical Network Research Centre on Neurodegenerative Diseases (CIBERNED) , Madrid 28031, Spain","Instituto de Biomedicina de Sevilla (IBiS), Hospital Universitario Virgen del Roc\u00edo/CSIC/Universidad de Sevilla and Departamento de Biolog\u00eda Celular, Universidad de Sevilla , Seville 41013, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomedical Network Research Centre on Neurodegenerative Diseases (CIBERNED) , Madrid 28031, Spain","institution_ids":["https://openalex.org/I4210086696"]},{"raw_affiliation_string":"Instituto de Biomedicina de Sevilla (IBiS), Hospital Universitario Virgen del Roc\u00edo/CSIC/Universidad de Sevilla and Departamento de Biolog\u00eda Celular, Universidad de Sevilla , Seville 41013, Spain","institution_ids":["https://openalex.org/I4210133602","https://openalex.org/I4210153139","https://openalex.org/I79238269"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016877430","display_name":"Marta Letr\u00e1n","orcid":null},"institutions":[{"id":"https://openalex.org/I4210133602","display_name":"Instituto de Biomedicina de Sevilla","ror":"https://ror.org/031zwx660","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I158283456","https://openalex.org/I4210133602","https://openalex.org/I79238269","https://openalex.org/I918821925"]},{"id":"https://openalex.org/I4210153139","display_name":"Hospital Universitario Virgen del Roc\u00edo","ror":"https://ror.org/04vfhnm78","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210153139"]},{"id":"https://openalex.org/I79238269","display_name":"Universidad de Sevilla","ror":"https://ror.org/03yxnpp24","country_code":"ES","type":"education","lineage":["https://openalex.org/I79238269"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Marta Letr\u00e1n","raw_affiliation_strings":["Instituto de Biomedicina de Sevilla (IBiS), Hospital Universitario Virgen del Roc\u00edo/CSIC/Universidad de Sevilla and Departamento de Biolog\u00eda Celular, Universidad de Sevilla , Seville 41013, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto de Biomedicina de Sevilla (IBiS), Hospital Universitario Virgen del Roc\u00edo/CSIC/Universidad de Sevilla and Departamento de Biolog\u00eda Celular, Universidad de Sevilla , Seville 41013, Spain","institution_ids":["https://openalex.org/I4210133602","https://openalex.org/I4210153139","https://openalex.org/I79238269"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062934381","display_name":"Melda Tozluo\u01e7lu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210093127","display_name":"MRC Laboratory for Molecular Cell Biology","ror":"https://ror.org/00fv61j67","country_code":"GB","type":"facility","lineage":["https://openalex.org/I124357947","https://openalex.org/I4210087105","https://openalex.org/I4210093127","https://openalex.org/I45129253","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Melda Tozluoglu","raw_affiliation_strings":["MRC Laboratory for Molecular Cell Biology, University College London , London WC1E 6BT, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MRC Laboratory for Molecular Cell Biology, University College London , London WC1E 6BT, UK","institution_ids":["https://openalex.org/I4210093127","https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038767238","display_name":"Yanlan Mao","orcid":"https://orcid.org/0000-0002-8722-4992"},"institutions":[{"id":"https://openalex.org/I200845125","display_name":"Nanjing University of Information Science and Technology","ror":"https://ror.org/02y0rxk19","country_code":"CN","type":"education","lineage":["https://openalex.org/I200845125"]},{"id":"https://openalex.org/I4210093127","display_name":"MRC Laboratory for Molecular Cell Biology","ror":"https://ror.org/00fv61j67","country_code":"GB","type":"facility","lineage":["https://openalex.org/I124357947","https://openalex.org/I4210087105","https://openalex.org/I4210093127","https://openalex.org/I45129253","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["CN","GB"],"is_corresponding":true,"raw_author_name":"Yanlan Mao","raw_affiliation_strings":["College of Information and Control, Nanjing University of Information Science and Technology , Nanjing, Jiangsu 210044, China","MRC Laboratory for Molecular Cell Biology, University College London , London WC1E 6BT, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information and Control, Nanjing University of Information Science and Technology , Nanjing, Jiangsu 210044, China","institution_ids":["https://openalex.org/I200845125"]},{"raw_affiliation_string":"MRC Laboratory for Molecular Cell Biology, University College London , London WC1E 6BT, UK","institution_ids":["https://openalex.org/I4210093127","https://openalex.org/I45129253"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060458756","display_name":"Luis M. Escudero","orcid":"https://orcid.org/0000-0001-8030-1820"},"institutions":[{"id":"https://openalex.org/I4210086696","display_name":"Biomedical Research Networking Center on Neurodegenerative Diseases","ror":"https://ror.org/00zca7903","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210086696"]},{"id":"https://openalex.org/I4210133602","display_name":"Instituto de Biomedicina de Sevilla","ror":"https://ror.org/031zwx660","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I158283456","https://openalex.org/I4210133602","https://openalex.org/I79238269","https://openalex.org/I918821925"]},{"id":"https://openalex.org/I4210153139","display_name":"Hospital Universitario Virgen del Roc\u00edo","ror":"https://ror.org/04vfhnm78","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210153139"]},{"id":"https://openalex.org/I79238269","display_name":"Universidad de Sevilla","ror":"https://ror.org/03yxnpp24","country_code":"ES","type":"education","lineage":["https://openalex.org/I79238269"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Luis M Escudero","raw_affiliation_strings":["Biomedical Network Research Centre on Neurodegenerative Diseases (CIBERNED) , Madrid 28031, Spain","Instituto de Biomedicina de Sevilla (IBiS), Hospital Universitario Virgen del Roc\u00edo/CSIC/Universidad de Sevilla and Departamento de Biolog\u00eda Celular, Universidad de Sevilla , Seville 41013, Spain"],"raw_orcid":"https://orcid.org/0000-0001-8030-1820","affiliations":[{"raw_affiliation_string":"Biomedical Network Research Centre on Neurodegenerative Diseases (CIBERNED) , Madrid 28031, Spain","institution_ids":["https://openalex.org/I4210086696"]},{"raw_affiliation_string":"Instituto de Biomedicina de Sevilla (IBiS), Hospital Universitario Virgen del Roc\u00edo/CSIC/Universidad de Sevilla and Departamento de Biolog\u00eda Celular, Universidad de Sevilla , Seville 41013, Spain","institution_ids":["https://openalex.org/I4210133602","https://openalex.org/I4210153139","https://openalex.org/I79238269"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5038767238","https://openalex.org/A5060458756"],"corresponding_institution_ids":["https://openalex.org/I200845125","https://openalex.org/I4210086696","https://openalex.org/I4210093127","https://openalex.org/I4210133602","https://openalex.org/I4210153139","https://openalex.org/I45129253","https://openalex.org/I79238269"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":1218,"currency":"EUR","value_usd":1313},"fwci":2.65,"has_fulltext":true,"cited_by_count":21,"citation_normalized_percentile":{"value":0.90199229,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"36","issue":"4","first_page":"1314","last_page":"1316"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.557699978351593,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.557699978351593,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.09749999642372131,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.04050000011920929,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epigraph","display_name":"Epigraph","score":0.9982119798660278},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6476380228996277},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.41762980818748474},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.39892929792404175},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.33646005392074585},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1819952428340912}],"concepts":[{"id":"https://openalex.org/C17192189","wikidata":"https://www.wikidata.org/wiki/Q1347059","display_name":"Epigraph","level":2,"score":0.9982119798660278},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6476380228996277},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.41762980818748474},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.39892929792404175},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.33646005392074585},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1819952428340912},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/btz683","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz683","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31544932","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31544932","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:www.repositoriosalud.es:10668/14529","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7703762/pdf","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/4/1314/32527812/btz683.pdf","source":{"id":"https://openalex.org/S4377196114","display_name":"RISalud Institutional Health Repository of Andaluc\u00eda","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"research article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7703762","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7703762","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:digital.csic.es:10261/235548","is_oa":true,"landing_page_url":"http://hdl.handle.net/10261/235548","pdf_url":null,"source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"http://purl.org/coar/resource_type/c_6501"},{"id":"pmh:oai:idus.us.es:11441/103158","is_oa":true,"landing_page_url":"https://hdl.handle.net/11441/103158","pdf_url":null,"source":{"id":"https://openalex.org/S4306401665","display_name":"Deposito de Investigacion Universidad de Sevilla (University of Seville)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79238269","host_organization_name":"Universidad de Sevilla","host_organization_lineage":["https://openalex.org/I79238269"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz683","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz683","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.46000000834465027}],"awards":[{"id":"https://openalex.org/G2203620678","display_name":"The Mechanics of Wound Healing and Tissue Regeneration","funder_award_id":"MR/N014529/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G2412442862","display_name":null,"funder_award_id":"MR/T031646/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G2583117844","display_name":null,"funder_award_id":"MR/N014529/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G4970647407","display_name":null,"funder_award_id":"31650110472","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7565240836","display_name":null,"funder_award_id":"MR/L009056/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G8271042758","display_name":null,"funder_award_id":"BFU2016-74975-P","funder_id":"https://openalex.org/F4320326262","funder_display_name":"Ministerio de Asuntos Econ\u00f3micos y Transformaci\u00f3n Digital, Gobierno de Espa\u00f1a"},{"id":"https://openalex.org/G830246384","display_name":null,"funder_award_id":"MC_ U12266B","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G864793154","display_name":"Tissue Mechanics in Growth and Regeneration","funder_award_id":"MR/L009056/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"}],"funders":[{"id":"https://openalex.org/F4320320615","display_name":"Lister Institute of Preventive Medicine","ror":"https://ror.org/03356n642"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320326262","display_name":"Ministerio de Asuntos Econ\u00f3micos y Transformaci\u00f3n Digital, Gobierno de Espa\u00f1a","ror":"https://ror.org/03sv46s19"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W1976010562","https://openalex.org/W1976215025","https://openalex.org/W1981477992","https://openalex.org/W1983922466","https://openalex.org/W2056069438","https://openalex.org/W2093529889","https://openalex.org/W2103243046","https://openalex.org/W2104812688","https://openalex.org/W2114185968","https://openalex.org/W2128598048","https://openalex.org/W2148762636","https://openalex.org/W2157312249","https://openalex.org/W2167279371","https://openalex.org/W2253160322","https://openalex.org/W2772866754","https://openalex.org/W2951551173","https://openalex.org/W2972173831"],"related_works":["https://openalex.org/W2736536716","https://openalex.org/W2066999332","https://openalex.org/W2963566464","https://openalex.org/W2391817034","https://openalex.org/W4297813212","https://openalex.org/W3086197249","https://openalex.org/W4367684998","https://openalex.org/W2952964201","https://openalex.org/W3035116611","https://openalex.org/W4287763734"],"abstract_inverted_index":{"SUMMARY:":[0],"Here":[1],"we":[2],"present":[3],"EpiGraph,":[4],"an":[5],"image":[6],"analysis":[7],"tool":[8],"that":[9,43],"quantifies":[10],"epithelial":[11,56],"organization.":[12],"Our":[13],"method":[14],"combines":[15],"computational":[16],"geometry":[17],"and":[18,60,99],"graph":[19],"theory":[20],"to":[21,62],"measure":[22],"the":[23,34,45,53,65,76,100],"degree":[24],"of":[25,27,47,55],"order":[26],"any":[28],"packed":[29],"tissue.":[30],"EpiGraph":[31,49,82,94],"goes":[32],"beyond":[33],"traditional":[35],"polygon":[36],"distribution":[37],"analysis,":[38],"capturing":[39],"other":[40],"organizational":[41],"traits":[42],"improve":[44],"characterization":[46],"epithelia.":[48],"can":[50],"objectively":[51],"compare":[52],"rearrangements":[54],"cells":[57],"during":[58],"development":[59],"homeostasis":[61],"quantify":[63],"how":[64],"global":[66],"ensemble":[67],"is":[68,95,102],"affected.":[69],"Importantly,":[70],"it":[71],"has":[72],"been":[73],"implemented":[74],"in":[75],"open-access":[77],"platform":[78],"Fiji.":[79],"This":[80],"makes":[81],"very":[83],"user":[84],"friendly,":[85],"with":[86],"no":[87],"programming":[88],"skills":[89],"required.":[90],"AVAILABILITY":[91],"AND":[92],"IMPLEMENTATION:":[93],"available":[96,113],"at":[97,114],"https://imagej.net/EpiGraph":[98],"code":[101],"accessible":[103],"(https://github.com/ComplexOrganizationOfLivingMatter/Epigraph)":[104],"under":[105],"GPLv3":[106],"license.":[107],"SUPPLEMENTARY":[108],"INFORMATION:":[109],"Supplementary":[110],"data":[111],"are":[112],"Bioinformatics":[115],"online.":[116]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
