{"id":"https://openalex.org/W2972130606","doi":"https://doi.org/10.1093/bioinformatics/btz678","title":"Applying citizen science to gene, drug and disease relationship extraction from biomedical abstracts","display_name":"Applying citizen science to gene, drug and disease relationship extraction from biomedical abstracts","publication_year":2019,"publication_date":"2019-08-30","ids":{"openalex":"https://openalex.org/W2972130606","doi":"https://doi.org/10.1093/bioinformatics/btz678","mag":"2972130606","pmid":"https://pubmed.ncbi.nlm.nih.gov/31504205"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz678","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz678","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/4/1226/37889325/bioinformatics_36_4_1226.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/4/1226/37889325/bioinformatics_36_4_1226.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086158264","display_name":"Ginger Tsueng","orcid":"https://orcid.org/0000-0001-9536-9115"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ginger Tsueng","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla, CA 92037, USA"],"raw_orcid":"https://orcid.org/0000-0001-9536-9115","affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036778527","display_name":"Max Nanis","orcid":"https://orcid.org/0000-0001-7587-232X"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Max Nanis","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla, CA 92037, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023589584","display_name":"Jennifer Fouquier","orcid":"https://orcid.org/0000-0002-0975-8235"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jennifer T Fouquier","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla, CA 92037, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030265214","display_name":"Michael Mayers","orcid":"https://orcid.org/0000-0002-7792-0150"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Mayers","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla, CA 92037, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087499135","display_name":"Benjamin M. Good","orcid":"https://orcid.org/0000-0002-7334-7852"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Benjamin M Good","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla, CA 92037, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045408201","display_name":"Andrew I. Su","orcid":"https://orcid.org/0000-0002-9859-4104"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew I Su","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla, CA 92037, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I123431417"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5086158264"],"corresponding_institution_ids":["https://openalex.org/I123431417"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.3803,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.57996184,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"36","issue":"4","first_page":"1226","last_page":"1233"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9814000129699707,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9814000129699707,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.00419999985024333,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.0038999998942017555,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/citizen-science","display_name":"Citizen science","score":0.8003625869750977},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7612965106964111},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.6988396644592285},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.6439109444618225},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.5479382276535034},{"id":"https://openalex.org/keywords/data-extraction","display_name":"Data extraction","score":0.5195384621620178},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.468334436416626},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4495406150817871},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.43435513973236084},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.4180826246738434},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.35565251111984253},{"id":"https://openalex.org/keywords/medline","display_name":"MEDLINE","score":0.20282286405563354},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.12566694617271423},{"id":"https://openalex.org/keywords/political-science","display_name":"Political science","score":0.10034006834030151}],"concepts":[{"id":"https://openalex.org/C197352329","wikidata":"https://www.wikidata.org/wiki/Q1093434","display_name":"Citizen science","level":2,"score":0.8003625869750977},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7612965106964111},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.6988396644592285},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.6439109444618225},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.5479382276535034},{"id":"https://openalex.org/C2777466982","wikidata":"https://www.wikidata.org/wiki/Q5227287","display_name":"Data extraction","level":3,"score":0.5195384621620178},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.468334436416626},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4495406150817871},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.43435513973236084},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.4180826246738434},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.35565251111984253},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.20282286405563354},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.12566694617271423},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.10034006834030151},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000080029","descriptor_name":"Citizen Science","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000080029","descriptor_name":"Citizen Science","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000080029","descriptor_name":"Citizen Science","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btz678","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz678","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/4/1226/37889325/bioinformatics_36_4_1226.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31504205","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31504205","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8104067","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8104067","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz678","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz678","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/4/1226/37889325/bioinformatics_36_4_1226.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1727994208","display_name":null,"funder_award_id":"U54GM114833","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G2145742749","display_name":null,"funder_award_id":"5UL1RR025774","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G2169460107","display_name":null,"funder_award_id":"U54-GM114833","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G3235976129","display_name":null,"funder_award_id":"R01GM089820","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G4047651510","display_name":null,"funder_award_id":"RR025774","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G4598630572","display_name":"ADMINISTRATIVE CORE","funder_award_id":"5u54gm114833-04","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G515370781","display_name":null,"funder_award_id":"UL1 RR025774","funder_id":"https://openalex.org/F4320337375","funder_display_name":"National Center for Research Resources"},{"id":"https://openalex.org/G6208363877","display_name":"Scripps Translational Science Institute (UL1)","funder_award_id":"5ul1rr025774-04","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6563988868","display_name":null,"funder_award_id":"CTSA; 5 UL1 RR025774","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"}],"funders":[{"id":"https://openalex.org/F4320316438","display_name":"Georgia Clinical and Translational Science Alliance","ror":null},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337375","display_name":"National Center for Research Resources","ror":"https://ror.org/04pw6fb54"},{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2972130606.pdf","grobid_xml":"https://content.openalex.org/works/W2972130606.grobid-xml"},"referenced_works_count":64,"referenced_works":["https://openalex.org/W194327752","https://openalex.org/W1521626219","https://openalex.org/W1586216651","https://openalex.org/W1601564520","https://openalex.org/W1610821757","https://openalex.org/W1776181700","https://openalex.org/W1850794217","https://openalex.org/W1901492489","https://openalex.org/W1964670939","https://openalex.org/W1982022486","https://openalex.org/W1993502890","https://openalex.org/W2011726136","https://openalex.org/W2013130010","https://openalex.org/W2028236657","https://openalex.org/W2032069669","https://openalex.org/W2040156859","https://openalex.org/W2053039860","https://openalex.org/W2075897300","https://openalex.org/W2083930252","https://openalex.org/W2098201295","https://openalex.org/W2101798695","https://openalex.org/W2117446654","https://openalex.org/W2129113459","https://openalex.org/W2131046557","https://openalex.org/W2159583324","https://openalex.org/W2169997311","https://openalex.org/W2205496875","https://openalex.org/W2239231358","https://openalex.org/W2275721306","https://openalex.org/W2309849638","https://openalex.org/W2335791510","https://openalex.org/W2337191715","https://openalex.org/W2340441220","https://openalex.org/W2343203988","https://openalex.org/W2344432445","https://openalex.org/W2396514412","https://openalex.org/W2416342585","https://openalex.org/W2468006349","https://openalex.org/W2481925617","https://openalex.org/W2520615710","https://openalex.org/W2547366414","https://openalex.org/W2557668118","https://openalex.org/W2590004848","https://openalex.org/W2604019706","https://openalex.org/W2619954869","https://openalex.org/W2624746686","https://openalex.org/W2755605206","https://openalex.org/W2760618582","https://openalex.org/W2779457220","https://openalex.org/W2808272687","https://openalex.org/W2841315182","https://openalex.org/W2883380892","https://openalex.org/W2884063414","https://openalex.org/W2891527769","https://openalex.org/W2904803701","https://openalex.org/W2951115607","https://openalex.org/W3100481520","https://openalex.org/W3217177297","https://openalex.org/W6636556141","https://openalex.org/W6646066992","https://openalex.org/W6671231321","https://openalex.org/W6698101803","https://openalex.org/W6704514790","https://openalex.org/W6712171949"],"related_works":["https://openalex.org/W2334378031","https://openalex.org/W842810586","https://openalex.org/W2916255597","https://openalex.org/W4319940250","https://openalex.org/W3095980030","https://openalex.org/W2352298027","https://openalex.org/W2092919065","https://openalex.org/W3138801416","https://openalex.org/W3198510869","https://openalex.org/W4379379356"],"abstract_inverted_index":{"MOTIVATION:":[0],"Biomedical":[1],"literature":[2],"is":[3,42,77],"growing":[4],"at":[5,258],"a":[6,46,69],"rate":[7],"that":[8,86,134,158,164],"outpaces":[9],"our":[10],"ability":[11],"to":[12,34,174],"harness":[13],"the":[14,23,62,122,127,142,165,182,189,201,221],"knowledge":[15],"contained":[16],"therein.":[17],"To":[18],"mine":[19],"valuable":[20],"inferences":[21],"from":[22],"large":[24],"volume":[25],"of":[26,48,65,72,93,98,126,144,152,215],"literature,":[27],"many":[28],"researchers":[29],"use":[30],"information":[31,36],"extraction":[32,41,114],"algorithms":[33],"harvest":[35],"in":[37,56,80,101,181,199],"biomedical":[38,102],"texts.":[39],"Information":[40],"usually":[43,59],"accomplished":[44],"via":[45],"combination":[47],"manual":[49,227],"expert":[50,73],"curation":[51],"and":[52,91,132,154,196,229,243,245],"computational":[53,57],"methods.":[54],"Advances":[55],"methods":[58],"depend":[60],"on":[61,149],"time-consuming":[63],"generation":[64],"gold":[66],"standards":[67],"by":[68,168],"limited":[70],"number":[71],"curators.":[74],"Citizen":[75],"science":[76],"public":[78],"participation":[79],"scientific":[81],"research.":[82],"We":[83,140,162,187,208],"previously":[84],"found":[85],"citizen":[87,135,169,190,225],"scientists":[88,136,170],"are":[89,256],"willing":[90],"capable":[92],"performing":[94],"named":[95,146],"entity":[96,147],"recognition":[97,148],"disease":[99],"mentions":[100],"abstracts,":[103],"but":[104],"did":[105],"not":[106,178],"know":[107],"if":[108],"this":[109,118,216,249],"was":[110],"true":[111],"with":[112,193],"relationship":[113,176],"(RE).":[115],"RESULTS:":[116],"In":[117],"article,":[119],"we":[120],"introduce":[121],"Relationship":[123,184],"Extraction":[124,185],"Module":[125],"web-based":[128],"application":[129],"Mark2Cure":[130,236,239],"(M2C)":[131],"demonstrate":[133],"can":[137,171],"perform":[138],"RE.":[139],"confirm":[141],"importance":[143],"accurate":[145],"user":[150],"performance":[151],"RE":[153],"identify":[155,175,197],"design":[156],"issues":[157],"impacted":[159],"data":[160,166,192,195,244,255],"quality.":[161],"find":[163],"generated":[167],"be":[172],"used":[173],"types":[177],"currently":[179],"available":[180,257],"M2C":[183],"Module.":[186],"compare":[188],"science-generated":[191],"algorithm-mined":[194],"ways":[198],"which":[200],"two":[202],"approaches":[203],"may":[204],"complement":[205],"one":[206],"another.":[207],"also":[209],"discuss":[210],"opportunities":[211],"for":[212,248],"future":[213],"improvement":[214],"system,":[217],"as":[218,220],"well":[219],"potential":[222],"synergies":[223],"between":[224],"science,":[226],"biocuration":[228],"natural":[230],"language":[231],"processing.":[232],"AVAILABILITY":[233],"AND":[234],"IMPLEMENTATION:":[235],"platform:":[237],"https://mark2cure.org;":[238],"source":[240],"code:":[241],"https://github.com/sulab/mark2cure;":[242],"analysis":[246],"code":[247],"article:":[250],"https://github.com/gtsueng/M2C_rel_nb.":[251],"SUPPLEMENTARY":[252],"INFORMATION:":[253],"Supplementary":[254],"Bioinformatics":[259],"online.":[260]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2026-08-06T08:24:18.245995","created_date":"2025-10-10T00:00:00"}
