{"id":"https://openalex.org/W2971052755","doi":"https://doi.org/10.1093/bioinformatics/btz673","title":"A Gaussian process-based definition reveals new and bona fide genetic interactions compared to a multiplicative model in the Gram-negative <i>Escherichia coli</i>","display_name":"A Gaussian process-based definition reveals new and bona fide genetic interactions compared to a multiplicative model in the Gram-negative <i>Escherichia coli</i>","publication_year":2019,"publication_date":"2019-08-23","ids":{"openalex":"https://openalex.org/W2971052755","doi":"https://doi.org/10.1093/bioinformatics/btz673","mag":"2971052755","pmid":"https://pubmed.ncbi.nlm.nih.gov/31504172"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz673","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz673","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9883677","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040735180","display_name":"Ashwani Kumar","orcid":"https://orcid.org/0000-0002-2100-900X"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Ashwani Kumar","raw_affiliation_strings":["Department of Computer Science , SK S4S 0A2, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science , SK S4S 0A2, Canada","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000662391","display_name":"Ali Hosseinnia","orcid":"https://orcid.org/0000-0002-6499-0758"},"institutions":[{"id":"https://openalex.org/I194028371","display_name":"University of Regina","ror":"https://ror.org/03dzc0485","country_code":"CA","type":"education","lineage":["https://openalex.org/I194028371"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Ali Hosseinnia","raw_affiliation_strings":["Department of Biochemistry, University of Regina , Regina, SK S4S 0A2, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Regina , Regina, SK S4S 0A2, Canada","institution_ids":["https://openalex.org/I194028371"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088928588","display_name":"Alla Gagarinova","orcid":"https://orcid.org/0000-0002-6521-6406"},"institutions":[{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Alla Gagarinova","raw_affiliation_strings":["Department of Biochemistry, University of Saskatchewan , Saskatoon, SK S7N 5E5, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Saskatchewan , Saskatoon, SK S7N 5E5, Canada","institution_ids":["https://openalex.org/I32625721"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063358488","display_name":"Sadhna Phanse","orcid":"https://orcid.org/0000-0001-6306-0551"},"institutions":[{"id":"https://openalex.org/I194028371","display_name":"University of Regina","ror":"https://ror.org/03dzc0485","country_code":"CA","type":"education","lineage":["https://openalex.org/I194028371"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Sadhna Phanse","raw_affiliation_strings":["Department of Biochemistry, University of Regina , Regina, SK S4S 0A2, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Regina , Regina, SK S4S 0A2, Canada","institution_ids":["https://openalex.org/I194028371"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100333099","display_name":"Sunyoung Kim","orcid":"https://orcid.org/0000-0002-1736-9088"},"institutions":[{"id":"https://openalex.org/I194028371","display_name":"University of Regina","ror":"https://ror.org/03dzc0485","country_code":"CA","type":"education","lineage":["https://openalex.org/I194028371"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Sunyoung Kim","raw_affiliation_strings":["Department of Biochemistry, University of Regina , Regina, SK S4S 0A2, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Regina , Regina, SK S4S 0A2, Canada","institution_ids":["https://openalex.org/I194028371"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055990536","display_name":"Khaled A. Aly","orcid":"https://orcid.org/0000-0001-7022-1173"},"institutions":[{"id":"https://openalex.org/I194028371","display_name":"University of Regina","ror":"https://ror.org/03dzc0485","country_code":"CA","type":"education","lineage":["https://openalex.org/I194028371"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Khaled A Aly","raw_affiliation_strings":["Department of Biochemistry, University of Regina , Regina, SK S4S 0A2, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Regina , Regina, SK S4S 0A2, Canada","institution_ids":["https://openalex.org/I194028371"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036785155","display_name":"Sandra Zilles","orcid":"https://orcid.org/0000-0001-7834-8574"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sandra Zilles","raw_affiliation_strings":["Department of Computer Science , SK S4S 0A2, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science , SK S4S 0A2, Canada","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073300511","display_name":"Mohan Babu","orcid":"https://orcid.org/0000-0003-4118-6406"},"institutions":[{"id":"https://openalex.org/I194028371","display_name":"University of Regina","ror":"https://ror.org/03dzc0485","country_code":"CA","type":"education","lineage":["https://openalex.org/I194028371"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Mohan Babu","raw_affiliation_strings":["Department of Biochemistry, University of Regina , Regina, SK S4S 0A2, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Regina , Regina, SK S4S 0A2, Canada","institution_ids":["https://openalex.org/I194028371"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5040735180"],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.5358,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.73090723,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":"36","issue":"3","first_page":"880","last_page":"889"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/multiplicative-function","display_name":"Multiplicative function","score":0.8373462557792664},{"id":"https://openalex.org/keywords/epistasis","display_name":"Epistasis","score":0.6347025632858276},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5060431361198425},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.47831037640571594},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4520419239997864},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.42315980792045593},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3648657500743866},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.35994529724121094},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.350109726190567},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.33084776997566223},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2385254204273224}],"concepts":[{"id":"https://openalex.org/C42747912","wikidata":"https://www.wikidata.org/wiki/Q1048447","display_name":"Multiplicative function","level":2,"score":0.8373462557792664},{"id":"https://openalex.org/C61727976","wikidata":"https://www.wikidata.org/wiki/Q751748","display_name":"Epistasis","level":3,"score":0.6347025632858276},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5060431361198425},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.47831037640571594},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4520419239997864},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.42315980792045593},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3648657500743866},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35994529724121094},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.350109726190567},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33084776997566223},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2385254204273224},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004843","descriptor_name":"Epistasis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004843","descriptor_name":"Epistasis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004843","descriptor_name":"Epistasis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016011","descriptor_name":"Normal Distribution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016011","descriptor_name":"Normal Distribution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016011","descriptor_name":"Normal Distribution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btz673","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz673","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31504172","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31504172","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9883677","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9883677","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:9883677","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9883677","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2534548736","display_name":null,"funder_award_id":"DG-05336","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G5266769761","display_name":null,"funder_award_id":"MSH-130178","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G7200981200","display_name":null,"funder_award_id":"DG-20234","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"}],"funders":[{"id":"https://openalex.org/F4320334506","display_name":"Canadian Institutes of Health Research","ror":"https://ror.org/01gavpb45"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":58,"referenced_works":["https://openalex.org/W147290053","https://openalex.org/W1481455535","https://openalex.org/W1504986101","https://openalex.org/W1510960581","https://openalex.org/W1591727435","https://openalex.org/W1964507408","https://openalex.org/W1967220526","https://openalex.org/W1968295028","https://openalex.org/W1973315873","https://openalex.org/W1983351627","https://openalex.org/W1988263223","https://openalex.org/W2009256841","https://openalex.org/W2018326742","https://openalex.org/W2029918259","https://openalex.org/W2030924818","https://openalex.org/W2032664706","https://openalex.org/W2037225069","https://openalex.org/W2042688172","https://openalex.org/W2048593866","https://openalex.org/W2052815101","https://openalex.org/W2061004320","https://openalex.org/W2062185406","https://openalex.org/W2063393607","https://openalex.org/W2065398669","https://openalex.org/W2086828721","https://openalex.org/W2101983500","https://openalex.org/W2104761968","https://openalex.org/W2107546215","https://openalex.org/W2108812454","https://openalex.org/W2111967267","https://openalex.org/W2126864339","https://openalex.org/W2128923603","https://openalex.org/W2130139983","https://openalex.org/W2130410032","https://openalex.org/W2130907642","https://openalex.org/W2133102806","https://openalex.org/W2133809942","https://openalex.org/W2133992568","https://openalex.org/W2145543095","https://openalex.org/W2149843002","https://openalex.org/W2162928287","https://openalex.org/W2168843989","https://openalex.org/W2231659008","https://openalex.org/W2321992114","https://openalex.org/W2407174002","https://openalex.org/W2424628474","https://openalex.org/W2522417827","https://openalex.org/W2530566872","https://openalex.org/W2552981562","https://openalex.org/W2581669044","https://openalex.org/W2614103706","https://openalex.org/W2755430790","https://openalex.org/W2765466523","https://openalex.org/W2775791231","https://openalex.org/W2783339841","https://openalex.org/W2799762305","https://openalex.org/W2883377762","https://openalex.org/W2924119339"],"related_works":["https://openalex.org/W1547817677","https://openalex.org/W2023460495","https://openalex.org/W2615678788","https://openalex.org/W1967902778","https://openalex.org/W3083099115","https://openalex.org/W1981509636","https://openalex.org/W4235217192","https://openalex.org/W3139253026","https://openalex.org/W3035525216","https://openalex.org/W2157308673"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2019-09-05T00:00:00"}
