{"id":"https://openalex.org/W2971047517","doi":"https://doi.org/10.1093/bioinformatics/btz667","title":"A latent unknown clustering integrating multi-omics data (LUCID) with phenotypic traits","display_name":"A latent unknown clustering integrating multi-omics data (LUCID) with phenotypic traits","publication_year":2019,"publication_date":"2019-08-21","ids":{"openalex":"https://openalex.org/W2971047517","doi":"https://doi.org/10.1093/bioinformatics/btz667","mag":"2971047517","pmid":"https://pubmed.ncbi.nlm.nih.gov/31504184"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz667","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz667","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/3/842/36663921/bioinformatics_36_3_842.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/3/842/36663921/bioinformatics_36_3_842.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045492508","display_name":"Cheng Peng","orcid":"https://orcid.org/0000-0002-4605-7534"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Cheng Peng","raw_affiliation_strings":["Department of Preventive Medicine, Keck School of Medicine, Los Angeles, CA 90089, USA"],"affiliations":[{"raw_affiliation_string":"Department of Preventive Medicine, Keck School of Medicine, Los Angeles, CA 90089, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111964102","display_name":"Jun Wang","orcid":"https://orcid.org/0009-0008-8475-2934"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jun Wang","raw_affiliation_strings":["Department of Preventive Medicine, Keck School of Medicine, Los Angeles, CA 90089, USA"],"affiliations":[{"raw_affiliation_string":"Department of Preventive Medicine, Keck School of Medicine, Los Angeles, CA 90089, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089719754","display_name":"Isaac Asante","orcid":"https://orcid.org/0000-0002-9628-3425"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Isaac Asante","raw_affiliation_strings":["Department of Clinical Pharmacy, School of Pharmacy, University of Southern California , Los Angeles, CA 90089, USA"],"affiliations":[{"raw_affiliation_string":"Department of Clinical Pharmacy, School of Pharmacy, University of Southern California , Los Angeles, CA 90089, USA","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002462952","display_name":"Stan G. Louie","orcid":"https://orcid.org/0000-0001-5941-6690"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stan Louie","raw_affiliation_strings":["Department of Clinical Pharmacy, School of Pharmacy, University of Southern California , Los Angeles, CA 90089, USA"],"affiliations":[{"raw_affiliation_string":"Department of Clinical Pharmacy, School of Pharmacy, University of Southern California , Los Angeles, CA 90089, USA","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085868833","display_name":"Ran Jin","orcid":"https://orcid.org/0000-0003-3847-4538"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ran Jin","raw_affiliation_strings":["Department of Preventive Medicine, Keck School of Medicine, Los Angeles, CA 90089, USA"],"affiliations":[{"raw_affiliation_string":"Department of Preventive Medicine, Keck School of Medicine, Los Angeles, CA 90089, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037617717","display_name":"Lida Chatzi","orcid":"https://orcid.org/0000-0002-3319-2438"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lida Chatzi","raw_affiliation_strings":["Department of Preventive Medicine, Keck School of Medicine, Los Angeles, CA 90089, USA"],"affiliations":[{"raw_affiliation_string":"Department of Preventive Medicine, Keck School of Medicine, Los Angeles, CA 90089, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101976827","display_name":"Graham Casey","orcid":"https://orcid.org/0000-0003-1584-5551"},"institutions":[{"id":"https://openalex.org/I2803036750","display_name":"Office of Public Health Genomics","ror":"https://ror.org/04spzbf72","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934","https://openalex.org/I2803036750"]},{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Graham Casey","raw_affiliation_strings":["Center for Public Health Genomics, Department of Public Health Sciences , University of Virginia, Charlottesville, VA 22908, USA"],"affiliations":[{"raw_affiliation_string":"Center for Public Health Genomics, Department of Public Health Sciences , University of Virginia, Charlottesville, VA 22908, USA","institution_ids":["https://openalex.org/I2803036750","https://openalex.org/I51556381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021077470","display_name":"Duncan C. Thomas","orcid":"https://orcid.org/0000-0002-6040-8804"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Duncan C Thomas","raw_affiliation_strings":["Department of Preventive Medicine, Keck School of Medicine, Los Angeles, CA 90089, USA"],"affiliations":[{"raw_affiliation_string":"Department of Preventive Medicine, Keck School of Medicine, Los Angeles, CA 90089, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5007768066","display_name":"David V. Conti","orcid":"https://orcid.org/0000-0002-2941-7833"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"David V Conti","raw_affiliation_strings":["Department of Preventive Medicine, Keck School of Medicine, Los Angeles, CA 90089, USA"],"affiliations":[{"raw_affiliation_string":"Department of Preventive Medicine, Keck School of Medicine, Los Angeles, CA 90089, USA","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5007768066"],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.0279,"has_fulltext":true,"cited_by_count":35,"citation_normalized_percentile":{"value":0.76237285,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"36","issue":"3","first_page":"842","last_page":"850"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.6454960107803345},{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.5688558220863342},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5055723190307617},{"id":"https://openalex.org/keywords/lucid-dream","display_name":"Lucid dream","score":0.4905187487602234},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3472331166267395},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3051387667655945},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.1969076693058014},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15500950813293457},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10769185423851013}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.6454960107803345},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.5688558220863342},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5055723190307617},{"id":"https://openalex.org/C139058780","wikidata":"https://www.wikidata.org/wiki/Q181078","display_name":"Lucid dream","level":4,"score":0.4905187487602234},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3472331166267395},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3051387667655945},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.1969076693058014},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15500950813293457},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10769185423851013},{"id":"https://openalex.org/C31903555","wikidata":"https://www.wikidata.org/wiki/Q1637030","display_name":"Food science","level":1,"score":0.0},{"id":"https://openalex.org/C2992468417","wikidata":"https://www.wikidata.org/wiki/Q271098","display_name":"Ganoderma lucidum","level":2,"score":0.0},{"id":"https://openalex.org/C2776618520","wikidata":"https://www.wikidata.org/wiki/Q1799774","display_name":"Ganoderma","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btz667","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz667","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/3/842/36663921/bioinformatics_36_3_842.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31504184","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31504184","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7986585","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7986585","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz667","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz667","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/3/842/36663921/bioinformatics_36_3_842.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.6499999761581421,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G2093246056","display_name":null,"funder_award_id":"P01 CA196569","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2141972424","display_name":null,"funder_award_id":"CA196569","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G2790371892","display_name":null,"funder_award_id":"CA196569","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2878536864","display_name":null,"funder_award_id":"R01 CA140561","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G5229491074","display_name":null,"funder_award_id":"P01 CA196569","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G789441714","display_name":null,"funder_award_id":"P01 CA196569, R01 CA140561","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2971047517.pdf","grobid_xml":"https://content.openalex.org/works/W2971047517.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W1456625250","https://openalex.org/W1489952129","https://openalex.org/W1492815834","https://openalex.org/W1513618424","https://openalex.org/W1950565663","https://openalex.org/W1979676475","https://openalex.org/W1998487261","https://openalex.org/W2005895632","https://openalex.org/W2009244976","https://openalex.org/W2014308840","https://openalex.org/W2017771330","https://openalex.org/W2020925091","https://openalex.org/W2023461603","https://openalex.org/W2025944550","https://openalex.org/W2032047739","https://openalex.org/W2037062671","https://openalex.org/W2044758663","https://openalex.org/W2097692855","https://openalex.org/W2103937456","https://openalex.org/W2105717378","https://openalex.org/W2112688502","https://openalex.org/W2122825543","https://openalex.org/W2125446223","https://openalex.org/W2133381849","https://openalex.org/W2134469465","https://openalex.org/W2135046866","https://openalex.org/W2147606185","https://openalex.org/W2149144946","https://openalex.org/W2156286678","https://openalex.org/W2164145796","https://openalex.org/W2197792425","https://openalex.org/W2300807558","https://openalex.org/W2474105078","https://openalex.org/W2480680997","https://openalex.org/W2487770199","https://openalex.org/W2612280405","https://openalex.org/W2889885761","https://openalex.org/W2909364225","https://openalex.org/W3098193298","https://openalex.org/W3103324688","https://openalex.org/W3106108064","https://openalex.org/W3122023273","https://openalex.org/W4252676770","https://openalex.org/W6677024349"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2996253900","https://openalex.org/W2031063778","https://openalex.org/W2476830224","https://openalex.org/W2003878696","https://openalex.org/W2621024742","https://openalex.org/W2269593430","https://openalex.org/W3012948126","https://openalex.org/W1553123381","https://openalex.org/W4396832677"],"abstract_inverted_index":{"Supplementary":[0],"materials":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":2}],"updated_date":"2026-03-16T09:10:04.655348","created_date":"2025-10-10T00:00:00"}
