{"id":"https://openalex.org/W2971273979","doi":"https://doi.org/10.1093/bioinformatics/btz666","title":"<i>CROSSalive</i> : a web server for predicting the <i>in vivo</i> structure of RNA molecules","display_name":"<i>CROSSalive</i> : a web server for predicting the <i>in vivo</i> structure of RNA molecules","publication_year":2019,"publication_date":"2019-08-27","ids":{"openalex":"https://openalex.org/W2971273979","doi":"https://doi.org/10.1093/bioinformatics/btz666","mag":"2971273979","pmid":"https://pubmed.ncbi.nlm.nih.gov/31504168"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz666","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz666","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/3/940/32369630/btz666.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/3/940/32369630/btz666.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040236847","display_name":"Riccardo Delli Ponti","orcid":"https://orcid.org/0000-0001-6541-0519"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Riccardo Delli Ponti","raw_affiliation_strings":["Gene Function and Evolution, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology (BIST) , Barcelona 08003, Spain","Universitat Pompeu Fabra (UPF) , Barcelona 08003, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Gene Function and Evolution, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology (BIST) , Barcelona 08003, Spain","institution_ids":["https://openalex.org/I4210137962"]},{"raw_affiliation_string":"Universitat Pompeu Fabra (UPF) , Barcelona 08003, Spain","institution_ids":["https://openalex.org/I170486558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007261639","display_name":"Alexandros Armaos","orcid":"https://orcid.org/0000-0003-0607-5663"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Alexandros Armaos","raw_affiliation_strings":["Gene Function and Evolution, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology (BIST) , Barcelona 08003, Spain","Universitat Pompeu Fabra (UPF) , Barcelona 08003, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Gene Function and Evolution, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology (BIST) , Barcelona 08003, Spain","institution_ids":["https://openalex.org/I4210137962"]},{"raw_affiliation_string":"Universitat Pompeu Fabra (UPF) , Barcelona 08003, Spain","institution_ids":["https://openalex.org/I170486558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059820932","display_name":"Andrea Vandelli","orcid":"https://orcid.org/0000-0002-8879-0144"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Andrea Vandelli","raw_affiliation_strings":["Gene Function and Evolution, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology (BIST) , Barcelona 08003, Spain","Universitat Pompeu Fabra (UPF) , Barcelona 08003, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Gene Function and Evolution, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology (BIST) , Barcelona 08003, Spain","institution_ids":["https://openalex.org/I4210137962"]},{"raw_affiliation_string":"Universitat Pompeu Fabra (UPF) , Barcelona 08003, Spain","institution_ids":["https://openalex.org/I170486558"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052209378","display_name":"Gian Gaetano Tartaglia","orcid":"https://orcid.org/0000-0001-7524-6310"},"institutions":[{"id":"https://openalex.org/I11932220","display_name":"Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats","ror":"https://ror.org/0371hy230","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I11932220"]},{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["ES","IT"],"is_corresponding":true,"raw_author_name":"Gian Gaetano Tartaglia","raw_affiliation_strings":["Department of Biology \u2018Charles Darwin\u2019, Sapienza University of Rome , Rome 00185, Italy","Gene Function and Evolution, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology (BIST) , Barcelona 08003, Spain","Institucio Catalana de Recerca i Estudis Avan\u00e7ats (ICREA) , Barcelona 08010, Spain","Universitat Pompeu Fabra (UPF) , Barcelona 08003, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology \u2018Charles Darwin\u2019, Sapienza University of Rome , Rome 00185, Italy","institution_ids":["https://openalex.org/I861853513"]},{"raw_affiliation_string":"Gene Function and Evolution, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology (BIST) , Barcelona 08003, Spain","institution_ids":["https://openalex.org/I4210137962"]},{"raw_affiliation_string":"Institucio Catalana de Recerca i Estudis Avan\u00e7ats (ICREA) , Barcelona 08010, Spain","institution_ids":["https://openalex.org/I11932220"]},{"raw_affiliation_string":"Universitat Pompeu Fabra (UPF) , Barcelona 08003, Spain","institution_ids":["https://openalex.org/I170486558"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5052209378"],"corresponding_institution_ids":["https://openalex.org/I11932220","https://openalex.org/I170486558","https://openalex.org/I4210137962","https://openalex.org/I861853513"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.1376,"has_fulltext":true,"cited_by_count":22,"citation_normalized_percentile":{"value":0.7762166,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"36","issue":"3","first_page":"940","last_page":"941"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.6620000004768372,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.6620000004768372,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.1412999927997589,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.13910000026226044,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.7451745867729187},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.6324730515480042},{"id":"https://openalex.org/keywords/in-vivo","display_name":"In vivo","score":0.6205193996429443},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6019009351730347},{"id":"https://openalex.org/keywords/xist","display_name":"XIST","score":0.569676399230957},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.45710453391075134},{"id":"https://openalex.org/keywords/nucleic-acid-structure","display_name":"Nucleic acid structure","score":0.41796037554740906},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4132845401763916},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3522629141807556},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2833482027053833},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.2592560052871704},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.18235313892364502},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.17159655690193176},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.16062802076339722},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.14282211661338806},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13438481092453003},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08713200688362122}],"concepts":[{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.7451745867729187},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.6324730515480042},{"id":"https://openalex.org/C207001950","wikidata":"https://www.wikidata.org/wiki/Q141124","display_name":"In vivo","level":2,"score":0.6205193996429443},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6019009351730347},{"id":"https://openalex.org/C110411900","wikidata":"https://www.wikidata.org/wiki/Q18032385","display_name":"XIST","level":5,"score":0.569676399230957},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.45710453391075134},{"id":"https://openalex.org/C126142528","wikidata":"https://www.wikidata.org/wiki/Q3771876","display_name":"Nucleic acid structure","level":4,"score":0.41796037554740906},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4132845401763916},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3522629141807556},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2833482027053833},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.2592560052871704},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.18235313892364502},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.17159655690193176},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.16062802076339722},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.14282211661338806},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13438481092453003},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08713200688362122},{"id":"https://openalex.org/C4323932","wikidata":"https://www.wikidata.org/wiki/Q898914","display_name":"X-inactivation","level":4,"score":0.0},{"id":"https://openalex.org/C35158069","wikidata":"https://www.wikidata.org/wiki/Q61333","display_name":"X chromosome","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btz666","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz666","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/3/940/32369630/btz666.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31504168","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31504168","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:repositori-api.upf.edu:10230/43907","is_oa":false,"landing_page_url":"http://hdl.handle.net/10230/43907","pdf_url":null,"source":{"id":"https://openalex.org/S4306402615","display_name":"Repositori digital de la UPF (Universitat Pompeu Fabra)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I170486558","host_organization_name":"Universitat Pompeu Fabra","host_organization_lineage":["https://openalex.org/I170486558"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9883674","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9883674","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:iris.uniroma1.it:11573/1451117","is_oa":true,"landing_page_url":"http://hdl.handle.net/11573/1451117","pdf_url":null,"source":{"id":"https://openalex.org/S4377196107","display_name":"IRIS Research product catalog (Sapienza University of Rome)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz666","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz666","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/3/940/32369630/btz666.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.44999998807907104,"display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G2380415859","display_name":null,"funder_award_id":"RIBOMYLOME_309545","funder_id":"https://openalex.org/F4320338335","funder_display_name":"H2020 European Research Council"},{"id":"https://openalex.org/G4017632220","display_name":null,"funder_award_id":"BFU2017-86970-P","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321837","display_name":"Ministerio de Econom\u00eda y Competitividad","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320338335","display_name":"H2020 European Research Council","ror":"https://ror.org/0472cxd90"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2971273979.pdf","grobid_xml":"https://content.openalex.org/works/W2971273979.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W1731645091","https://openalex.org/W1894777043","https://openalex.org/W1974454061","https://openalex.org/W2003993220","https://openalex.org/W2032514134","https://openalex.org/W2055431298","https://openalex.org/W2108575282","https://openalex.org/W2134943543","https://openalex.org/W2217151798","https://openalex.org/W2509465044","https://openalex.org/W2509925948","https://openalex.org/W2559242307","https://openalex.org/W2613629789","https://openalex.org/W7075708610"],"related_works":["https://openalex.org/W1472344963","https://openalex.org/W3093937951","https://openalex.org/W2554722417","https://openalex.org/W2470187006","https://openalex.org/W2581348958","https://openalex.org/W2264054990","https://openalex.org/W2581888268","https://openalex.org/W2902683473","https://openalex.org/W1989561030","https://openalex.org/W2088051090"],"abstract_inverted_index":{"MOTIVATION:":[0],"RNA":[1,77],"structure":[2],"is":[3,106],"difficult":[4],"to":[5,10,23,73],"predict":[6,24],"in":[7,32,44,62,84,97],"vivo":[8,33],"due":[9],"interactions":[11],"with":[12],"enzymes":[13],"and":[14,27,47,60,66,87],"other":[15],"molecules.":[16],"Here":[17],"we":[18],"introduce":[19],"CROSSalive,":[20],"an":[21,89],"algorithm":[22,70],"the":[25,74,85,92],"single-":[26,65],"double-stranded":[28,67],"regions":[29],"of":[30,36,49,95],"RNAs":[31],"using":[34],"predictions":[35],"protein":[37],"interactions.":[38],"RESULTS:":[39],"Trained":[40],"on":[41],"icSHAPE":[42],"data":[43,114],"presence":[45],"(m6a+)":[46],"absence":[48],"N6":[50],"methyladenosine":[51],"modification":[52],"(m6a-),":[53],"CROSSalive":[54,104],"achieves":[55],"cross-validation":[56],"accuracies":[57],"between":[58],"0.70":[59],"0.88":[61],"identifying":[63],"high-confidence":[64],"regions.":[68,100],"The":[69],"was":[71],"applied":[72],"long":[75],"non-coding":[76],"Xist":[78],"(17":[79],"900":[80],"nt,":[81],"not":[82],"present":[83],"training)":[86],"shows":[88],"Area":[90],"under":[91],"ROC":[93],"curve":[94],"0.83":[96],"predicting":[98],"structured":[99],"AVAILABILITY":[101],"AND":[102],"IMPLEMENTATION:":[103],"webserver":[105],"freely":[107],"accessible":[108],"at":[109,117],"http://service.tartaglialab.com/new_submission/crossalive.":[110],"SUPPLEMENTARY":[111],"INFORMATION:":[112],"Supplementary":[113],"are":[115],"available":[116],"Bioinformatics":[118],"online.":[119]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":5}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2019-09-05T00:00:00"}
