{"id":"https://openalex.org/W2970900071","doi":"https://doi.org/10.1093/bioinformatics/btz659","title":"EasyModel: user-friendly tool for building and analysis of simple mathematical models in systems biology","display_name":"EasyModel: user-friendly tool for building and analysis of simple mathematical models in systems biology","publication_year":2019,"publication_date":"2019-08-22","ids":{"openalex":"https://openalex.org/W2970900071","doi":"https://doi.org/10.1093/bioinformatics/btz659","mag":"2970900071","pmid":"https://pubmed.ncbi.nlm.nih.gov/31504183"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz659","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz659","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079567577","display_name":"Jordi Bartolome","orcid":"https://orcid.org/0000-0002-4348-9307"},"institutions":[{"id":"https://openalex.org/I15766328","display_name":"Universitat de Lleida","ror":"https://ror.org/050c3cw24","country_code":"ES","type":"education","lineage":["https://openalex.org/I15766328"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Jordi Bartolome","raw_affiliation_strings":["Department of Computer Science and INSPIRES, Universitat de Lleida , Lleida 25001, Spain"],"raw_orcid":"https://orcid.org/0000-0002-4348-9307","affiliations":[{"raw_affiliation_string":"Department of Computer Science and INSPIRES, Universitat de Lleida , Lleida 25001, Spain","institution_ids":["https://openalex.org/I15766328"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020840486","display_name":"Rui Alves","orcid":"https://orcid.org/0000-0002-8112-5184"},"institutions":[{"id":"https://openalex.org/I15766328","display_name":"Universitat de Lleida","ror":"https://ror.org/050c3cw24","country_code":"ES","type":"education","lineage":["https://openalex.org/I15766328"]},{"id":"https://openalex.org/I4210133944","display_name":"Instituto de Investigaci\u00f3n Biom\u00e9dica de Lleida","ror":"https://ror.org/03mfyme49","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210133944","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Rui Alves","raw_affiliation_strings":["Department of Basic Medical Sciences and IRBLleida , Universitat de Lleida, Lleida 25198, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Basic Medical Sciences and IRBLleida , Universitat de Lleida, Lleida 25198, Spain","institution_ids":["https://openalex.org/I4210133944","https://openalex.org/I15766328"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070309620","display_name":"Francesc Solsona","orcid":"https://orcid.org/0000-0002-4830-9184"},"institutions":[{"id":"https://openalex.org/I15766328","display_name":"Universitat de Lleida","ror":"https://ror.org/050c3cw24","country_code":"ES","type":"education","lineage":["https://openalex.org/I15766328"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Francesc Solsona","raw_affiliation_strings":["Department of Computer Science and INSPIRES, Universitat de Lleida , Lleida 25001, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and INSPIRES, Universitat de Lleida , Lleida 25001, Spain","institution_ids":["https://openalex.org/I15766328"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051533335","display_name":"Ivan Teixid\u00f3","orcid":"https://orcid.org/0000-0002-4880-9031"},"institutions":[{"id":"https://openalex.org/I15766328","display_name":"Universitat de Lleida","ror":"https://ror.org/050c3cw24","country_code":"ES","type":"education","lineage":["https://openalex.org/I15766328"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ivan Teixido","raw_affiliation_strings":["Department of Computer Science and INSPIRES, Universitat de Lleida , Lleida 25001, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and INSPIRES, Universitat de Lleida , Lleida 25001, Spain","institution_ids":["https://openalex.org/I15766328"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5020840486","https://openalex.org/A5070309620","https://openalex.org/A5079567577"],"corresponding_institution_ids":["https://openalex.org/I15766328","https://openalex.org/I4210133944"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.0829,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.46303439,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"36","issue":"3","first_page":"976","last_page":"977"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.8420473337173462},{"id":"https://openalex.org/keywords/user-friendly","display_name":"User Friendly","score":0.7876276969909668},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7751830816268921},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.6485863327980042},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.49913954734802246},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.4670240879058838},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.40560853481292725},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3610817790031433},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.28400689363479614}],"concepts":[{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.8420473337173462},{"id":"https://openalex.org/C61437842","wikidata":"https://www.wikidata.org/wiki/Q281291","display_name":"User Friendly","level":2,"score":0.7876276969909668},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7751830816268921},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.6485863327980042},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.49913954734802246},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.4670240879058838},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.40560853481292725},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3610817790031433},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.28400689363479614},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btz659","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz659","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31504183","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31504183","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:recercat.cat:10459.1/67914","is_oa":false,"landing_page_url":"http://hdl.handle.net/10459.1/67914","pdf_url":null,"source":{"id":"https://openalex.org/S4306402147","display_name":"RECERCAT (Consorci de Serveis Universitaris de Catalunya)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210090028","host_organization_name":"Consorci de Serveis Universitaris de Catalunya","host_organization_lineage":["https://openalex.org/I4210090028"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.6899999976158142}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W99751109","https://openalex.org/W2000982470","https://openalex.org/W2063219876","https://openalex.org/W2069076431","https://openalex.org/W2107062718","https://openalex.org/W2150908245","https://openalex.org/W2162144833","https://openalex.org/W2580869787","https://openalex.org/W7036415886"],"related_works":["https://openalex.org/W2388056151","https://openalex.org/W4200420406","https://openalex.org/W76206621","https://openalex.org/W1491138852","https://openalex.org/W2057032210","https://openalex.org/W2970900071","https://openalex.org/W822747711","https://openalex.org/W2343012267","https://openalex.org/W1975460472","https://openalex.org/W2921284597"],"abstract_inverted_index":{"SUMMARY:":[0],"EasyModel":[1],"is":[2,29,73],"a":[3],"new":[4,23],"user-friendly":[5],"web":[6,69],"application":[7],"that":[8],"contains":[9],"ready-for-simulation":[10],"versions":[11],"of":[12,22,35],"the":[13,19,30,57,68],"BioModels":[14],"Database,":[15],"and":[16,33,55],"allows":[17],"for":[18,59],"intuitive":[20],"creation":[21],"models.":[24],"Its":[25],"main":[26],"target":[27],"audience":[28],"experimental":[31],"biologist":[32],"students":[34],"bioinformatics":[36],"or":[37],"systems":[38],"biology":[39],"without":[40],"programming":[41],"skills.":[42],"Expert":[43],"users":[44],"can":[45],"also":[46],"benefit":[47],"from":[48],"it":[49],"by":[50],"implementing":[51],"basic":[52],"models":[53],"quickly":[54],"downloading":[56],"code":[58],"further":[60],"tailoring.":[61],"AVAILABILITY":[62],"AND":[63],"IMPLEMENTATION:":[64],"Freely":[65],"available":[66],"on":[67],"at":[70],"https://easymodel.udl.cat.":[71],"Implementation":[72],"described":[74],"in":[75],"its":[76],"own":[77],"section.":[78]},"counts_by_year":[{"year":2022,"cited_by_count":1}],"updated_date":"2026-06-18T08:10:14.011955","created_date":"2025-10-10T00:00:00"}
