{"id":"https://openalex.org/W2969968071","doi":"https://doi.org/10.1093/bioinformatics/btz656","title":"CRDS: Consensus Reverse Docking System for target fishing","display_name":"CRDS: Consensus Reverse Docking System for target fishing","publication_year":2019,"publication_date":"2019-08-17","ids":{"openalex":"https://openalex.org/W2969968071","doi":"https://doi.org/10.1093/bioinformatics/btz656","mag":"2969968071","pmid":"https://pubmed.ncbi.nlm.nih.gov/31432077"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz656","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz656","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021377208","display_name":"Aeri Lee","orcid":null},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Aeri Lee","raw_affiliation_strings":["Department of Bio and Brain Engineering, KAIST , Daejeon 34141, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bio and Brain Engineering, KAIST , Daejeon 34141, Republic of Korea","institution_ids":["https://openalex.org/I157485424"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071721971","display_name":"Dongsup Kim","orcid":"https://orcid.org/0000-0002-5916-6799"},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Dongsup Kim","raw_affiliation_strings":["Department of Bio and Brain Engineering, KAIST , Daejeon 34141, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bio and Brain Engineering, KAIST , Daejeon 34141, Republic of Korea","institution_ids":["https://openalex.org/I157485424"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5071721971"],"corresponding_institution_ids":["https://openalex.org/I157485424"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.4889,"has_fulltext":false,"cited_by_count":26,"citation_normalized_percentile":{"value":0.90391212,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":93,"max":99},"biblio":{"volume":"36","issue":"3","first_page":"959","last_page":"960"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9635000228881836,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9635000228881836,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.010599999688565731,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.005799999926239252,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/fishing","display_name":"Fishing","score":0.5885124802589417},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.548433780670166},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5431188941001892},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37292951345443726},{"id":"https://openalex.org/keywords/fishery","display_name":"Fishery","score":0.34300532937049866},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2305077612400055},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.08617192506790161},{"id":"https://openalex.org/keywords/veterinary-medicine","display_name":"Veterinary medicine","score":0.085359126329422}],"concepts":[{"id":"https://openalex.org/C514101110","wikidata":"https://www.wikidata.org/wiki/Q14373","display_name":"Fishing","level":2,"score":0.5885124802589417},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.548433780670166},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5431188941001892},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37292951345443726},{"id":"https://openalex.org/C505870484","wikidata":"https://www.wikidata.org/wiki/Q180538","display_name":"Fishery","level":1,"score":0.34300532937049866},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2305077612400055},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.08617192506790161},{"id":"https://openalex.org/C42972112","wikidata":"https://www.wikidata.org/wiki/Q170201","display_name":"Veterinary medicine","level":1,"score":0.085359126329422}],"mesh":[{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D032921","descriptor_name":"Consensus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D032921","descriptor_name":"Consensus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D032921","descriptor_name":"Consensus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D032921","descriptor_name":"Consensus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btz656","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz656","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31432077","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31432077","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.5099999904632568}],"awards":[{"id":"https://openalex.org/G1694860768","display_name":null,"funder_award_id":"2019R1A2C1007951","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G8287457893","display_name":null,"funder_award_id":"2017M3A9C4065952","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"}],"funders":[{"id":"https://openalex.org/F4320322120","display_name":"National Research Foundation of Korea","ror":"https://ror.org/013aysd81"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W1980969309","https://openalex.org/W1989277387","https://openalex.org/W1993403967","https://openalex.org/W2028985567","https://openalex.org/W2038252445","https://openalex.org/W2052030759","https://openalex.org/W2134967712","https://openalex.org/W2334483166","https://openalex.org/W2398478519","https://openalex.org/W2588658334","https://openalex.org/W2608559058","https://openalex.org/W2916487223","https://openalex.org/W2925232784","https://openalex.org/W4233698560"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2886339410","https://openalex.org/W2056369879","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2159549863","https://openalex.org/W1890418061","https://openalex.org/W2066726723"],"abstract_inverted_index":{"MOTIVATION:":[0],"Identification":[1],"of":[2,14,52,107,162,177],"putative":[3],"drug":[4,15,31],"targets":[5],"is":[6,36,58,186],"a":[7,62,73,79,96,105,148],"critical":[8],"step":[9],"for":[10,24,66,95],"explaining":[11],"the":[12,29,39,50,160,175],"mechanism":[13],"action":[16],"against":[17,115],"multiple":[18],"targets,":[19],"finding":[20],"new":[21],"therapeutic":[22],"indications":[23],"existing":[25],"drugs":[26],"and":[27,127,137,142,174],"unveiling":[28],"adverse":[30],"reactions.":[32],"One":[33],"important":[34],"approach":[35],"to":[37,60],"use":[38],"molecular":[40,70],"docking.":[41],"However,":[42],"its":[43],"widespread":[44],"utilization":[45],"has":[46],"been":[47],"hindered":[48],"by":[49,69],"lack":[51],"easy-to-use":[53],"public":[54],"servers.":[55],"Therefore,":[56],"it":[57],"vital":[59],"develop":[61],"streamlined":[63],"computational":[64],"tool":[65,83],"target":[67],"prediction":[68],"docking":[71,114,168],"on":[72],"large":[74],"scale.":[75],"RESULTS:":[76],"We":[77],"present":[78],"fully":[80],"automated":[81],"web":[82,157,184],"named":[84,151],"Consensus":[85,152],"Reverse":[86],"Docking":[87,153],"System":[88],"(CRDS),":[89],"which":[90],"predicts":[91],"potential":[92],"interaction":[93,166],"sites":[94],"given":[97],"drug.":[98],"To":[99],"improve":[100],"hit":[101],"rates,":[102],"we":[103],"developed":[104],"strategy":[106],"consensus":[108,178],"scoring.":[109],"CRDS":[110],"carries":[111],"out":[112],"reverse":[113],"5254":[116],"candidate":[117],"protein":[118],"structures":[119],"using":[120],"three":[121],"different":[122],"scoring":[123],"functions":[124],"(GoldScore,":[125],"Vina":[126,134],"LeDock":[128,138],"from":[129],"GOLD":[130],"version":[131,135,139],"5.7.1,":[132],"AutoDock":[133],"1.1.2":[136],"1.0,":[140],"respectively),":[141],"those":[143],"scores":[144],"are":[145,194],"combined":[146],"into":[147],"single":[149],"score":[150],"Score":[154],"(CDS).":[155],"The":[156,183],"server":[158,185],"provides":[159],"list":[161],"top":[163],"50":[164],"predicted":[165],"sites,":[167],"conformations,":[169],"10":[170],"most":[171],"significant":[172],"pathways":[173],"distribution":[176],"scores.":[179],"AVAILABILITY":[180],"AND":[181],"IMPLEMENTATION:":[182],"available":[187,195],"at":[188,196],"http://pbil.kaist.ac.kr/CRDS.":[189],"SUPPLEMENTARY":[190],"INFORMATION:":[191],"Supplementary":[192],"data":[193],"Bioinformatics":[197],"online.":[198]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":4}],"updated_date":"2026-08-14T07:06:38.338062","created_date":"2025-10-10T00:00:00"}
