{"id":"https://openalex.org/W2968633412","doi":"https://doi.org/10.1093/bioinformatics/btz634","title":"Tersect: a set theoretical utility for exploring sequence variant data","display_name":"Tersect: a set theoretical utility for exploring sequence variant data","publication_year":2019,"publication_date":"2019-08-06","ids":{"openalex":"https://openalex.org/W2968633412","doi":"https://doi.org/10.1093/bioinformatics/btz634","mag":"2968633412","pmid":"https://pubmed.ncbi.nlm.nih.gov/31392327"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz634","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz634","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://dspace.lib.cranfield.ac.uk/handle/1826/15315","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067347869","display_name":"Tomasz J. Kurowski","orcid":"https://orcid.org/0000-0002-7733-5808"},"institutions":[{"id":"https://openalex.org/I82284825","display_name":"Cranfield University","ror":"https://ror.org/05cncd958","country_code":"GB","type":"education","lineage":["https://openalex.org/I82284825"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Tomasz J Kurowski","raw_affiliation_strings":["The Bioinformatics Group, School of Water, Energy and Environment, Cranfield University , Bedford MK43 0AL, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Bioinformatics Group, School of Water, Energy and Environment, Cranfield University , Bedford MK43 0AL, UK","institution_ids":["https://openalex.org/I82284825"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060147540","display_name":"Fady Mohareb","orcid":"https://orcid.org/0000-0002-7880-2519"},"institutions":[{"id":"https://openalex.org/I82284825","display_name":"Cranfield University","ror":"https://ror.org/05cncd958","country_code":"GB","type":"education","lineage":["https://openalex.org/I82284825"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Fady Mohareb","raw_affiliation_strings":["The Bioinformatics Group, School of Water, Energy and Environment, Cranfield University , Bedford MK43 0AL, UK"],"raw_orcid":"https://orcid.org/0000-0002-7880-2519","affiliations":[{"raw_affiliation_string":"The Bioinformatics Group, School of Water, Energy and Environment, Cranfield University , Bedford MK43 0AL, UK","institution_ids":["https://openalex.org/I82284825"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5060147540"],"corresponding_institution_ids":["https://openalex.org/I82284825"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.322,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.65971445,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"36","issue":"3","first_page":"934","last_page":"935"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.3610999882221222,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.3610999882221222,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.3312999904155731,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.16990000009536743,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.7363483905792236},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.6714974641799927},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6526060104370117},{"id":"https://openalex.org/keywords/data-set","display_name":"Data set","score":0.5383665561676025},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.43238309025764465},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2251463234424591},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1849481463432312},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12570461630821228},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12206315994262695}],"concepts":[{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.7363483905792236},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.6714974641799927},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6526060104370117},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.5383665561676025},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.43238309025764465},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2251463234424591},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1849481463432312},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12570461630821228},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12206315994262695}],"mesh":[{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btz634","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz634","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31392327","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31392327","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:dspace.lib.cranfield.ac.uk:1826/15315","is_oa":true,"landing_page_url":"http://dspace.lib.cranfield.ac.uk/handle/1826/15315","pdf_url":null,"source":{"id":"https://openalex.org/S4306401778","display_name":"CERES (Cranfield University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I82284825","host_organization_name":"Cranfield University","host_organization_lineage":["https://openalex.org/I82284825"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"pmh:oai:dspace.lib.cranfield.ac.uk:1826/15315","is_oa":true,"landing_page_url":"http://dspace.lib.cranfield.ac.uk/handle/1826/15315","pdf_url":null,"source":{"id":"https://openalex.org/S4306401778","display_name":"CERES (Cranfield University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I82284825","host_organization_name":"Cranfield University","host_organization_lineage":["https://openalex.org/I82284825"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3387449359","display_name":"Genomics-assisted selection of Solanum chilense introgression lines for enhancing drought resistance in tomatoes","funder_award_id":"BB/L011611/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G7347109709","display_name":null,"funder_award_id":"BB/L011611/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W1981713497","https://openalex.org/W2003421875","https://openalex.org/W2102619694","https://openalex.org/W2104549677","https://openalex.org/W2119451273","https://openalex.org/W2147818769","https://openalex.org/W2149992227","https://openalex.org/W2799324424","https://openalex.org/W2899066170","https://openalex.org/W2945365545"],"related_works":["https://openalex.org/W2152844235","https://openalex.org/W2376454312","https://openalex.org/W2027108423","https://openalex.org/W1855666948","https://openalex.org/W2758561209","https://openalex.org/W2594414941","https://openalex.org/W1548095260","https://openalex.org/W2781711915","https://openalex.org/W2112817590","https://openalex.org/W1555291398"],"abstract_inverted_index":{"SUMMARY:":[0],"Comparing":[1],"genomic":[2,102],"features":[3],"among":[4],"a":[5,17,27,42,74,112,144],"large":[6,43],"panel":[7],"of":[8,20,29,45,53,63,101,127,143],"individuals":[9,40],"across":[10],"the":[11,21,60,86,170],"same":[12],"species":[13],"is":[14,111,174],"considered":[15],"nowadays":[16],"core":[18],"part":[19,100,142],"bioinformatics":[22],"analyses.":[23],"This":[24,89],"typically":[25],"involves":[26],"series":[28],"complex":[30],"theoretical":[31,123],"expressions":[32,124],"to":[33,59,81,125,148],"compare,":[34],"intersect,":[35],"extract":[36],"symmetric":[37],"differences":[38],"between":[39],"within":[41],"set":[44,122],"genotypes.":[46],"Several":[47],"publically":[48],"available":[49,176,184],"tools":[50,92],"are":[51,183],"capable":[52],"performing":[54],"such":[55,67,106],"tasks;":[56],"however,":[57],"due":[58],"sheer":[61],"size":[62],"variants":[64],"being":[65],"queried,":[66],"tasks":[68],"can":[69,132],"be":[70,133],"computationally":[71],"expensive":[72],"with":[73],"runtime":[75],"ranging":[76],"from":[77],"few":[78],"minutes":[79],"up":[80],"several":[82],"hours":[83],"depending":[84],"on":[85],"dataset":[87],"size.":[88],"makes":[90],"existing":[91],"unsuitable":[93],"for":[94,136,156],"interactive":[95,137],"data":[96,103,138,182],"query":[97],"or":[98],"as":[99,107,141],"visualization":[104],"platforms":[105],"genome":[108],"browsers.":[109],"Tersect":[110,162,173],"lightweight,":[113],"high-performance":[114],"command-line":[115],"utility":[116],"which":[117],"interprets":[118],"and":[119,140,153,167],"applies":[120],"flexible":[121],"sets":[126],"sequence":[128],"variant":[129,157],"data.":[130,158],"It":[131],"used":[134],"both":[135],"exploration":[139],"larger":[145],"pipeline":[146],"thanks":[147],"its":[149],"highly":[150],"optimized":[151],"storage":[152],"indexing":[154],"algorithms":[155],"AVAILABILITY":[159],"AND":[160],"IMPLEMENTATION:":[161],"was":[163],"implemented":[164],"in":[165],"C":[166],"released":[168],"under":[169],"MIT":[171],"license.":[172],"freely":[175],"at":[177,185],"https://github.com/tomkurowski/tersect.":[178],"SUPPLEMENTARY":[179],"INFORMATION:":[180],"Supplementary":[181],"Bioinformatics":[186],"online.":[187]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
