{"id":"https://openalex.org/W2968659476","doi":"https://doi.org/10.1093/bioinformatics/btz631","title":"G3viz: an R package to interactively visualize genetic mutation data using a lollipop-diagram","display_name":"G3viz: an R package to interactively visualize genetic mutation data using a lollipop-diagram","publication_year":2019,"publication_date":"2019-08-07","ids":{"openalex":"https://openalex.org/W2968659476","doi":"https://doi.org/10.1093/bioinformatics/btz631","mag":"2968659476","pmid":"https://pubmed.ncbi.nlm.nih.gov/31393560"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz631","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz631","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/3/928/48982715/bioinformatics_36_3_928.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/3/928/48982715/bioinformatics_36_3_928.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069073554","display_name":"Xin Guo","orcid":"https://orcid.org/0000-0003-3894-1693"},"institutions":[{"id":"https://openalex.org/I3045169105","display_name":"Southern University of Science and Technology","ror":"https://ror.org/049tv2d57","country_code":"CN","type":"education","lineage":["https://openalex.org/I3045169105"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xin Guo","raw_affiliation_strings":["Apostle Inc., Menlo Park , CA 94025, USA","School of Innovation and Entrepreneurship, Southern University of Science and Technology , Nanshan, Shenzhen 518055, China","Shenzhen Apostle-SUSTECH LTD , Baoan, Shenzhen 518101, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Apostle Inc., Menlo Park , CA 94025, USA","institution_ids":[]},{"raw_affiliation_string":"School of Innovation and Entrepreneurship, Southern University of Science and Technology , Nanshan, Shenzhen 518055, China","institution_ids":["https://openalex.org/I3045169105"]},{"raw_affiliation_string":"Shenzhen Apostle-SUSTECH LTD , Baoan, Shenzhen 518101, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100335210","display_name":"Bo Zhang","orcid":"https://orcid.org/0000-0001-8745-2752"},"institutions":[{"id":"https://openalex.org/I3045169105","display_name":"Southern University of Science and Technology","ror":"https://ror.org/049tv2d57","country_code":"CN","type":"education","lineage":["https://openalex.org/I3045169105"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bo Zhang","raw_affiliation_strings":["Apostle Inc., Menlo Park , CA 94025, USA","School of Innovation and Entrepreneurship, Southern University of Science and Technology , Nanshan, Shenzhen 518055, China","Shenzhen Apostle-SUSTECH LTD , Baoan, Shenzhen 518101, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Apostle Inc., Menlo Park , CA 94025, USA","institution_ids":[]},{"raw_affiliation_string":"School of Innovation and Entrepreneurship, Southern University of Science and Technology , Nanshan, Shenzhen 518055, China","institution_ids":["https://openalex.org/I3045169105"]},{"raw_affiliation_string":"Shenzhen Apostle-SUSTECH LTD , Baoan, Shenzhen 518101, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103191569","display_name":"Wenqi Zeng","orcid":"https://orcid.org/0009-0008-4953-4616"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wenqi Zeng","raw_affiliation_strings":["Apostle Inc., Menlo Park , CA 94025, USA","Shenzhen Apostle-SUSTECH LTD , Baoan, Shenzhen 518101, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Apostle Inc., Menlo Park , CA 94025, USA","institution_ids":[]},{"raw_affiliation_string":"Shenzhen Apostle-SUSTECH LTD , Baoan, Shenzhen 518101, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003915129","display_name":"Shuting Zhao","orcid":"https://orcid.org/0009-0008-1379-9954"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Shuting Zhao","raw_affiliation_strings":["Apostle Inc., Menlo Park , CA 94025, USA","Shenzhen Apostle-SUSTECH LTD , Baoan, Shenzhen 518101, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Apostle Inc., Menlo Park , CA 94025, USA","institution_ids":[]},{"raw_affiliation_string":"Shenzhen Apostle-SUSTECH LTD , Baoan, Shenzhen 518101, China","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055763642","display_name":"Dongliang Ge","orcid":"https://orcid.org/0000-0001-9802-4112"},"institutions":[{"id":"https://openalex.org/I3045169105","display_name":"Southern University of Science and Technology","ror":"https://ror.org/049tv2d57","country_code":"CN","type":"education","lineage":["https://openalex.org/I3045169105"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Dongliang Ge","raw_affiliation_strings":["Apostle Inc., Menlo Park , CA 94025, USA","School of Innovation and Entrepreneurship, Southern University of Science and Technology , Nanshan, Shenzhen 518055, China","Shenzhen Apostle-SUSTECH LTD , Baoan, Shenzhen 518101, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Apostle Inc., Menlo Park , CA 94025, USA","institution_ids":[]},{"raw_affiliation_string":"School of Innovation and Entrepreneurship, Southern University of Science and Technology , Nanshan, Shenzhen 518055, China","institution_ids":["https://openalex.org/I3045169105"]},{"raw_affiliation_string":"Shenzhen Apostle-SUSTECH LTD , Baoan, Shenzhen 518101, China","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5055763642"],"corresponding_institution_ids":["https://openalex.org/I3045169105"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.0816,"has_fulltext":true,"cited_by_count":29,"citation_normalized_percentile":{"value":0.73276876,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"36","issue":"3","first_page":"928","last_page":"929"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.2126999944448471,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.2126999944448471,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.15060000121593475,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.08089999854564667,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7620772123336792},{"id":"https://openalex.org/keywords/usability","display_name":"Usability","score":0.47623828053474426},{"id":"https://openalex.org/keywords/javascript","display_name":"JavaScript","score":0.4626157879829407},{"id":"https://openalex.org/keywords/diagram","display_name":"Diagram","score":0.457070916891098},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.42707258462905884},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.4233369827270508},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.42008280754089355},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.4124850928783417},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.41023680567741394},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3557429909706116},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.24203327298164368},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.23668348789215088},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1834818720817566}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7620772123336792},{"id":"https://openalex.org/C170130773","wikidata":"https://www.wikidata.org/wiki/Q216378","display_name":"Usability","level":2,"score":0.47623828053474426},{"id":"https://openalex.org/C544833334","wikidata":"https://www.wikidata.org/wiki/Q2005","display_name":"JavaScript","level":2,"score":0.4626157879829407},{"id":"https://openalex.org/C186399060","wikidata":"https://www.wikidata.org/wiki/Q959962","display_name":"Diagram","level":2,"score":0.457070916891098},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.42707258462905884},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.4233369827270508},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.42008280754089355},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.4124850928783417},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.41023680567741394},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3557429909706116},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.24203327298164368},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.23668348789215088},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1834818720817566}],"mesh":[{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btz631","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz631","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/3/928/48982715/bioinformatics_36_3_928.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31393560","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31393560","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz631","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz631","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/3/928/48982715/bioinformatics_36_3_928.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.41999998688697815}],"awards":[],"funders":[{"id":"https://openalex.org/F4320335803","display_name":"Shenzhen Fundamental Research and Discipline Layout project","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2968659476.pdf","grobid_xml":"https://content.openalex.org/works/W2968659476.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W1587026990","https://openalex.org/W2111147662","https://openalex.org/W2114843025","https://openalex.org/W2135415614","https://openalex.org/W2141885858","https://openalex.org/W2149441684","https://openalex.org/W2329659234","https://openalex.org/W2476462209","https://openalex.org/W2613362156","https://openalex.org/W2896872272","https://openalex.org/W4210400672","https://openalex.org/W4254687493"],"related_works":["https://openalex.org/W2606446052","https://openalex.org/W2036021480","https://openalex.org/W3195777957","https://openalex.org/W2461078469","https://openalex.org/W2382668227","https://openalex.org/W4389670110","https://openalex.org/W2348482143","https://openalex.org/W2024584030","https://openalex.org/W2187546663","https://openalex.org/W2429057255"],"abstract_inverted_index":{"SUMMARY:":[0],"The":[1,102,115],"lollipop-diagram":[2,26,51],"is":[3,31,105,119],"one":[4],"of":[5,17,60,79,93],"the":[6,109],"widely":[7],"used":[8],"graphical":[9],"representations":[10],"to":[11,44],"visualize":[12,66],"and":[13,71,81,96],"explore":[14,45],"translational":[15],"effects":[16],"genetic":[18,46],"mutations":[19],"in":[20,52,75],"cancer":[21],"genomics.":[22],"However,":[23],"an":[24,38],"easy-to-use":[25],"tool":[27],"with":[28,90],"full":[29],"functionality":[30],"still":[32],"lacking.":[33],"Here,":[34],"we":[35],"introduce":[36],"g3viz,":[37],"R":[39,61,103],"package":[40,104,118],"that":[41],"enables":[42],"researchers":[43,89],"mutation":[47],"data":[48,67,131],"using":[49],"a":[50,53,57],"web":[54],"browser.":[55],"With":[56],"few":[58],"lines":[59],"code,":[62],"users":[63],"can":[64,84],"interactively":[65],"details,":[68],"annotate":[69],"findings":[70],"export":[72],"resultant":[73],"diagrams":[74],"high-quality":[76],"figures.":[77],"Because":[78],"usefulness":[80],"usability,":[82],"g3viz":[83],"be":[85],"generally":[86],"exploited":[87],"by":[88],"different":[91],"levels":[92],"bioinformatics":[94],"skills":[95],"programming":[97],"experience.":[98],"AVAILABILITY":[99],"AND":[100],"IMPLEMENTATION:":[101],"freely":[106,120],"available":[107,121,133],"under":[108,122],"MIT":[110,123],"license":[111,124],"from":[112],"CRAN":[113],"(http://cran.r-project.org/web/packages/g3viz).":[114],"g3lollipop":[116],"JavaScript":[117],"at":[125,134],"GitHub":[126],"(https://github.com/g3viz/g3lollipop.js).":[127],"SUPPLEMENTARY":[128],"INFORMATION:":[129],"Supplementary":[130],"are":[132],"Bioinformatics":[135],"online.":[136]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
