{"id":"https://openalex.org/W2967177832","doi":"https://doi.org/10.1093/bioinformatics/btz625","title":"BBKNN: fast batch alignment of single cell transcriptomes","display_name":"BBKNN: fast batch alignment of single cell transcriptomes","publication_year":2019,"publication_date":"2019-08-08","ids":{"openalex":"https://openalex.org/W2967177832","doi":"https://doi.org/10.1093/bioinformatics/btz625","mag":"2967177832","pmid":"https://pubmed.ncbi.nlm.nih.gov/31400197"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz625","doi":"https://doi.org/10.1093/bioinformatics/btz625","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz625","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/3/964/48982285/bioinformatics_36_3_964.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["abdc-a","anvur-class-a","anvur-scientific","ccf-a","cwts-core","doaj","dongbi-b","doyens","jufo-3","ki-jl-2","medline","norway-2","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/3/964/48982285/bioinformatics_36_3_964.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090126209","display_name":"Krzysztof Pola\u0144ski","orcid":"https://orcid.org/0000-0002-2586-9576","observed_orcids":["https://orcid.org/0000-0002-2586-9576"]},"institutions":[{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Krzysztof Pola\u0144ski","raw_affiliation_strings":["Cellular Genetics, Wellcome Sanger Institute , Hinxton, Cambridge CB10 1SA, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cellular Genetics, Wellcome Sanger Institute , Hinxton, Cambridge CB10 1SA, UK","institution_ids":["https://openalex.org/I2802476451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088977635","display_name":"Matthew D. Young","orcid":"https://orcid.org/0000-0003-0937-5290","observed_orcids":["https://orcid.org/0000-0003-0937-5290"]},"institutions":[{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Matthew D Young","raw_affiliation_strings":["Cellular Genetics, Wellcome Sanger Institute , Hinxton, Cambridge CB10 1SA, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cellular Genetics, Wellcome Sanger Institute , Hinxton, Cambridge CB10 1SA, UK","institution_ids":["https://openalex.org/I2802476451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047497779","display_name":"Zhichao Miao","orcid":"https://orcid.org/0000-0002-5777-9815","observed_orcids":["https://orcid.org/0000-0002-5777-9815"]},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Zhichao Miao","raw_affiliation_strings":["Cellular Genetics, Wellcome Sanger Institute , Hinxton, Cambridge CB10 1SA, UK","European Molecular Biology Laboratory, European Bioinformatics Institute , Hinxton, Cambridge CB10 1SD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cellular Genetics, Wellcome Sanger Institute , Hinxton, Cambridge CB10 1SA, UK","institution_ids":["https://openalex.org/I2802476451"]},{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute , Hinxton, Cambridge CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105457989","display_name":"Kerstin B. Meyer","orcid":"https://orcid.org/0000-0001-5906-1498","observed_orcids":["https://orcid.org/0000-0001-5906-1498"]},"institutions":[{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Kerstin B Meyer","raw_affiliation_strings":["Cellular Genetics, Wellcome Sanger Institute , Hinxton, Cambridge CB10 1SA, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cellular Genetics, Wellcome Sanger Institute , Hinxton, Cambridge CB10 1SA, UK","institution_ids":["https://openalex.org/I2802476451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028596003","display_name":"Sarah Amalia Teichmann","orcid":"https://orcid.org/0000-0002-6294-6366","observed_orcids":["https://orcid.org/0000-0002-6294-6366"]},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]},{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Sarah A Teichmann","raw_affiliation_strings":["Cellular Genetics, Wellcome Sanger Institute , Hinxton, Cambridge CB10 1SA, UK","Theory of Condensed Matter Group, Cavendish Laboratory/Department of Physics, University of Cambridge , Cambridge CB3 0HE, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cellular Genetics, Wellcome Sanger Institute , Hinxton, Cambridge CB10 1SA, UK","institution_ids":["https://openalex.org/I2802476451"]},{"raw_affiliation_string":"Theory of Condensed Matter Group, Cavendish Laboratory/Department of Physics, University of Cambridge , Cambridge CB3 0HE, UK","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101701220","display_name":"Jong-Eun Park","orcid":"https://orcid.org/0000-0002-1687-2423","observed_orcids":["https://orcid.org/0000-0002-1687-2423"]},"institutions":[{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Jong-Eun Park","raw_affiliation_strings":["Cellular Genetics, Wellcome Sanger Institute , Hinxton, Cambridge CB10 1SA, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cellular Genetics, Wellcome Sanger Institute , Hinxton, Cambridge CB10 1SA, UK","institution_ids":["https://openalex.org/I2802476451"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5028596003","https://openalex.org/A5101701220"],"corresponding_institution_ids":["https://openalex.org/I241749","https://openalex.org/I2802476451"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":{"value":3989,"currency":"USD","value_usd":3989},"fwci":23.7444,"has_fulltext":true,"cited_by_count":927,"citation_normalized_percentile":{"value":0.998071,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"36","issue":"3","first_page":"964","last_page":"965"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/single-cell-rna-sequencing","display_name":"single-cell RNA sequencing","score":0.7149999737739563},{"id":"https://openalex.org/keywords/batch-effect-correction","display_name":"batch effect correction","score":0.8989999890327454},{"id":"https://openalex.org/keywords/data-integration","display_name":"data integration","score":0.7689999938011169},{"id":"https://openalex.org/keywords/computational-efficiency","display_name":"computational efficiency","score":0.6380000114440918},{"id":"https://openalex.org/keywords/single-cell-transcriptomics","display_name":"single-cell transcriptomics","score":0.5910000205039978}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7951910495758057},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.7466439008712769},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.6590128540992737},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5299402475357056},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.5073680281639099},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4660220146179199},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.4253968298435211},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.2522115707397461},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12538611888885498},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000073359","descriptor_name":"Exome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073359","descriptor_name":"Exome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073359","descriptor_name":"Exome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btz625","doi":"https://doi.org/10.1093/bioinformatics/btz625","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz625","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/3/964/48982285/bioinformatics_36_3_964.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["abdc-a","anvur-class-a","anvur-scientific","ccf-a","cwts-core","doaj","dongbi-b","doyens","jufo-3","ki-jl-2","medline","norway-2","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"doi:10.1101/397042","doi":"https://doi.org/10.1101/397042","is_oa":true,"landing_page_url":"https://doi.org/10.1101/397042","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2018/08/22/397042.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},{"id":"pmid:31400197","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31400197","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9883685","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9883685","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz625","doi":"https://doi.org/10.1093/bioinformatics/btz625","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz625","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/3/964/48982285/bioinformatics_36_3_964.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["abdc-a","anvur-class-a","anvur-scientific","ccf-a","cwts-core","doaj","dongbi-b","doyens","jufo-3","ki-jl-2","medline","norway-2","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"sustainable_development_goals_aurora":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.5}],"study_designs":[],"awards":[{"id":"https://openalex.org/G1335143235","display_name":"Single cell gene expression atlas","funder_award_id":"108437/Z/15/Z","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G2339430666","display_name":"An Extended Pilot for the Human Cell Atlas: Adult tissues, human development and inflammation-mediated pathologies","funder_award_id":"211276/Z/18/Z","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G4642712072","display_name":null,"funder_award_id":"WT206194","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G5372294882","display_name":"Single cell gene expression atlas","funder_award_id":"108437","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G6082200543","display_name":"An Extended Pilot for the Human Cell Atlas: Adult tissues, human development and inflammation-mediated pathologies","funder_award_id":"211276","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G6868616705","display_name":null,"funder_award_id":"/Z/15/Z","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"}],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2967177832.pdf","grobid_xml":"https://content.openalex.org/works/W2967177832.grobid-xml"},"referenced_works_count":51,"referenced_works":["https://openalex.org/W1662487404","https://openalex.org/W1965428318","https://openalex.org/W1979283544","https://openalex.org/W1981509058","https://openalex.org/W1984883254","https://openalex.org/W2019552331","https://openalex.org/W2023887100","https://openalex.org/W2026641296","https://openalex.org/W2028695285","https://openalex.org/W2037167703","https://openalex.org/W2069295116","https://openalex.org/W2084942072","https://openalex.org/W2101234009","https://openalex.org/W2102212449","https://openalex.org/W2128227827","https://openalex.org/W2135553161","https://openalex.org/W2135937351","https://openalex.org/W2141967607","https://openalex.org/W2148101811","https://openalex.org/W2342688693","https://openalex.org/W2463988862","https://openalex.org/W2509957998","https://openalex.org/W2523369352","https://openalex.org/W2526262591","https://openalex.org/W2588569583","https://openalex.org/W2612519453","https://openalex.org/W2616922646","https://openalex.org/W2741536364","https://openalex.org/W2747545374","https://openalex.org/W2786672974","https://openalex.org/W2788348358","https://openalex.org/W2794480084","https://openalex.org/W2794521141","https://openalex.org/W2794765397","https://openalex.org/W2795687816","https://openalex.org/W2796170779","https://openalex.org/W2800392236","https://openalex.org/W2805619986","https://openalex.org/W2806983506","https://openalex.org/W2883913778","https://openalex.org/W2894687190","https://openalex.org/W2897249806","https://openalex.org/W2905317377","https://openalex.org/W2942880491","https://openalex.org/W2949067670","https://openalex.org/W2949177718","https://openalex.org/W2951506174","https://openalex.org/W2984472267","https://openalex.org/W3208535986","https://openalex.org/W6773842061","https://openalex.org/W6912533487"],"related_works":["https://openalex.org/W2618286804","https://openalex.org/W2378211422","https://openalex.org/W2329643025","https://openalex.org/W4321353415","https://openalex.org/W2745001401","https://openalex.org/W2002770077","https://openalex.org/W3131163342","https://openalex.org/W2092256833","https://openalex.org/W2142369114","https://openalex.org/W2361728394"],"abstract_inverted_index":{"Abstract":[0],"Increasing":[1],"numbers":[2],"of":[3,45,68,86,121],"large":[4],"scale":[5],"single":[6,39],"cell":[7,40,109,122],"RNA-Seq":[8],"projects":[9],"are":[10,33,61],"leading":[11],"to":[12,50],"a":[13,98],"data":[14,23,52,79],"explosion,":[15],"which":[16,117],"can":[17],"only":[18],"be":[19],"fully":[20],"exploited":[21],"through":[22],"integration.":[24],"Therefore,":[25],"efficient":[26],"computational":[27],"tools":[28],"for":[29,35,88,130],"combining":[30],"diverse":[31],"datasets":[32],"crucial":[34],"biology":[36],"in":[37,93],"the":[38,66,84,128,132],"genomics":[41],"era.":[42],"A":[43],"number":[44],"methods":[46],"have":[47,72],"been":[48],"developed":[49,73],"assist":[51],"integration":[53,80],"by":[54],"removing":[55],"technical":[56],"batch":[57],"effects,":[58],"but":[59],"most":[60],"computationally":[62],"intensive.":[63],"To":[64],"overcome":[65],"challenge":[67],"enormous":[69],"datasets,":[70,116],"we":[71],"BBKNN,":[74],"an":[75],"extremely":[76],"fast":[77],"graph-based":[78],"method.":[81],"We":[82],"illustrate":[83],"power":[85],"BBKNN":[87,106,137],"dimensionalityreduced":[89],"visualisation":[90],"and":[91,124,126],"clustering":[92],"multiple":[94],"biological":[95],"scenarios,":[96],"including":[97],"massive":[99],"integrative":[100],"study":[101],"over":[102],"several":[103],"murine":[104],"atlases.":[105],"successfully":[107],"connects":[108],"populations":[110],"across":[111],"experimentally":[112],"heterogeneous":[113],"mouse":[114],"scRNA-Seq":[115],"reveals":[118],"global":[119],"markers":[120],"type":[123],"organspecificity":[125],"provides":[127],"foundation":[129],"inferring":[131],"underlying":[133],"transcription":[134],"factor":[135],"network.":[136],"is":[138],"available":[139],"at":[140],"https://github.com/Teichlab/bbknn":[141],".":[142]},"counts_by_year":[{"year":2026,"cited_by_count":117},{"year":2025,"cited_by_count":165},{"year":2024,"cited_by_count":176},{"year":2023,"cited_by_count":139},{"year":2022,"cited_by_count":128},{"year":2021,"cited_by_count":112},{"year":2020,"cited_by_count":65},{"year":2019,"cited_by_count":21},{"year":2018,"cited_by_count":2}],"updated_date":"2026-10-13T10:08:12.033832","created_date":"2025-10-10T00:00:00"}
