{"id":"https://openalex.org/W2967966874","doi":"https://doi.org/10.1093/bioinformatics/btz624","title":"KRAB ZNF explorer\u2014the online tool for the exploration of the transcriptomic profiles of KRAB-ZNF factors in The Cancer Genome Atlas","display_name":"KRAB ZNF explorer\u2014the online tool for the exploration of the transcriptomic profiles of KRAB-ZNF factors in The Cancer Genome Atlas","publication_year":2019,"publication_date":"2019-08-06","ids":{"openalex":"https://openalex.org/W2967966874","doi":"https://doi.org/10.1093/bioinformatics/btz624","mag":"2967966874","pmid":"https://pubmed.ncbi.nlm.nih.gov/31392309"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz624","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz624","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010044367","display_name":"Rafa\u0142 Cylwa","orcid":null},"institutions":[{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Rafa\u0142 Cylwa","raw_affiliation_strings":["Faculty of Mathematics, Informatics, and Mechanics, University of Warsaw , 02-097 Warsaw, Poland"],"affiliations":[{"raw_affiliation_string":"Faculty of Mathematics, Informatics, and Mechanics, University of Warsaw , 02-097 Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014964972","display_name":"Kornel Kie\u0142czewski","orcid":null},"institutions":[{"id":"https://openalex.org/I108403487","display_name":"Warsaw University of Technology","ror":"https://ror.org/00y0xnp53","country_code":"PL","type":"education","lineage":["https://openalex.org/I108403487"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Kornel Kie\u0142czewski","raw_affiliation_strings":["Faculty of Mathematics and Information Science, Warsaw University of Technology , 00-662 Warsaw, Poland"],"affiliations":[{"raw_affiliation_string":"Faculty of Mathematics and Information Science, Warsaw University of Technology , 00-662 Warsaw, Poland","institution_ids":["https://openalex.org/I108403487"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007692393","display_name":"Marta Machnik","orcid":"https://orcid.org/0000-0002-2670-5629"},"institutions":[{"id":"https://openalex.org/I4210112614","display_name":"Greater Poland Cancer Center","ror":"https://ror.org/0243nmr44","country_code":"PL","type":"other","lineage":["https://openalex.org/I4210112614"]},{"id":"https://openalex.org/I120230055","display_name":"Poznan University of Medical Sciences","ror":"https://ror.org/02zbb2597","country_code":"PL","type":"education","lineage":["https://openalex.org/I120230055"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Marta Machnik","raw_affiliation_strings":["Department of Cancer Diagnostics and Immunology, Greater Poland Cancer Centre , Poznan 61\u2013866, Poland","Department of Cancer Immunology, Poznan University of Medical Sciences , Poznan 60\u2013408, Poland"],"affiliations":[{"raw_affiliation_string":"Department of Cancer Diagnostics and Immunology, Greater Poland Cancer Centre , Poznan 61\u2013866, Poland","institution_ids":["https://openalex.org/I4210112614"]},{"raw_affiliation_string":"Department of Cancer Immunology, Poznan University of Medical Sciences , Poznan 60\u2013408, Poland","institution_ids":["https://openalex.org/I120230055"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056159828","display_name":"Urszula Oleksiewicz","orcid":"https://orcid.org/0000-0003-0357-9284"},"institutions":[{"id":"https://openalex.org/I120230055","display_name":"Poznan University of Medical Sciences","ror":"https://ror.org/02zbb2597","country_code":"PL","type":"education","lineage":["https://openalex.org/I120230055"]},{"id":"https://openalex.org/I4210112614","display_name":"Greater Poland Cancer Center","ror":"https://ror.org/0243nmr44","country_code":"PL","type":"other","lineage":["https://openalex.org/I4210112614"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Urszula Oleksiewicz","raw_affiliation_strings":["Department of Cancer Diagnostics and Immunology, Greater Poland Cancer Centre , Poznan 61\u2013866, Poland","Department of Cancer Immunology, Poznan University of Medical Sciences , Poznan 60\u2013408, Poland"],"affiliations":[{"raw_affiliation_string":"Department of Cancer Diagnostics and Immunology, Greater Poland Cancer Centre , Poznan 61\u2013866, Poland","institution_ids":["https://openalex.org/I4210112614"]},{"raw_affiliation_string":"Department of Cancer Immunology, Poznan University of Medical Sciences , Poznan 60\u2013408, Poland","institution_ids":["https://openalex.org/I120230055"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049061860","display_name":"Przemys\u0142aw Biecek","orcid":"https://orcid.org/0000-0001-8423-1823"},"institutions":[{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]},{"id":"https://openalex.org/I108403487","display_name":"Warsaw University of Technology","ror":"https://ror.org/00y0xnp53","country_code":"PL","type":"education","lineage":["https://openalex.org/I108403487"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Przemys\u0142aw Biecek","raw_affiliation_strings":["Faculty of Mathematics and Information Science, Warsaw University of Technology , 00-662 Warsaw, Poland","Faculty of Mathematics, Informatics, and Mechanics, University of Warsaw , 02-097 Warsaw, Poland"],"affiliations":[{"raw_affiliation_string":"Faculty of Mathematics and Information Science, Warsaw University of Technology , 00-662 Warsaw, Poland","institution_ids":["https://openalex.org/I108403487"]},{"raw_affiliation_string":"Faculty of Mathematics, Informatics, and Mechanics, University of Warsaw , 02-097 Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5056159828"],"corresponding_institution_ids":["https://openalex.org/I120230055","https://openalex.org/I4210112614"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.5153,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.64902052,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"36","issue":"3","first_page":"980","last_page":"981"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9898999929428101,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11841","display_name":"Nuclear Structure and Function","score":0.9886999726295471,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/zinc-finger","display_name":"Zinc finger","score":0.5925475358963013},{"id":"https://openalex.org/keywords/kr\u00fcppel","display_name":"Kr\u00fcppel","score":0.5715779066085815},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5102438926696777},{"id":"https://openalex.org/keywords/mega","display_name":"Mega-","score":0.4816095530986786},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.44407618045806885},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.440313458442688},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.36260366439819336},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.2941678762435913},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19835910201072693}],"concepts":[{"id":"https://openalex.org/C24284526","wikidata":"https://www.wikidata.org/wiki/Q204785","display_name":"Zinc finger","level":4,"score":0.5925475358963013},{"id":"https://openalex.org/C2781435330","wikidata":"https://www.wikidata.org/wiki/Q6440544","display_name":"Kr\u00fcppel","level":4,"score":0.5715779066085815},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5102438926696777},{"id":"https://openalex.org/C2781078984","wikidata":"https://www.wikidata.org/wiki/Q107205","display_name":"Mega-","level":2,"score":0.4816095530986786},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.44407618045806885},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.440313458442688},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.36260366439819336},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.2941678762435913},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19835910201072693},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C1276947","wikidata":"https://www.wikidata.org/wiki/Q333","display_name":"Astronomy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012097","descriptor_name":"Repressor Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012097","descriptor_name":"Repressor Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012097","descriptor_name":"Repressor Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016335","descriptor_name":"Zinc Fingers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016335","descriptor_name":"Zinc Fingers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016335","descriptor_name":"Zinc Fingers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btz624","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz624","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31392309","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31392309","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7812993893","display_name":null,"funder_award_id":"2015/17/B/NZ2/03689","funder_id":"https://openalex.org/F4320322650","funder_display_name":"Narodowym Centrum Nauki"}],"funders":[{"id":"https://openalex.org/F4320322650","display_name":"Narodowym Centrum Nauki","ror":"https://ror.org/03ha2q922"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":5,"referenced_works":["https://openalex.org/W1963811389","https://openalex.org/W1999574084","https://openalex.org/W2029799334","https://openalex.org/W2582743722","https://openalex.org/W2901672307"],"related_works":["https://openalex.org/W2053530326","https://openalex.org/W2148140761","https://openalex.org/W4255957245","https://openalex.org/W2150397405","https://openalex.org/W2004618220","https://openalex.org/W2036130173","https://openalex.org/W4250403254","https://openalex.org/W2133383018","https://openalex.org/W2474057722","https://openalex.org/W2967966874"],"abstract_inverted_index":{"KRAB":[0],"ZNF":[1],"explorer":[2],"is":[3,14],"available":[4,15,27],"at":[5],"http://mi2.mini.pw.edu.pl:":[6],"8080/KRAB_ZNF/.":[7],"The":[8],"source":[9,20],"code":[10,21],"for":[11,22],"shiny":[12],"application":[13],"at:":[16,28],"https://github.com/MI2DataLab/KRAB_ZNF/tree/master/app":[17],"and":[18,24],"the":[19],"analyses":[23],"precalculations":[25],"are":[26],"https://github.com/MI2DataLab/KRAB_ZNF/tree/master/work.":[29]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2}],"updated_date":"2026-04-16T08:26:57.006410","created_date":"2025-10-10T00:00:00"}
