{"id":"https://openalex.org/W2965052093","doi":"https://doi.org/10.1093/bioinformatics/btz571","title":"BioNorm: deep learning-based event normalization for the curation of reaction databases","display_name":"BioNorm: deep learning-based event normalization for the curation of reaction databases","publication_year":2019,"publication_date":"2019-07-24","ids":{"openalex":"https://openalex.org/W2965052093","doi":"https://doi.org/10.1093/bioinformatics/btz571","mag":"2965052093","pmid":"https://pubmed.ncbi.nlm.nih.gov/31350561"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz571","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz571","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019903374","display_name":"Peiliang Lou","orcid":"https://orcid.org/0000-0002-6683-0256"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Peiliang Lou","raw_affiliation_strings":["Department of Computer Science and Technology, School of Electronic and Information Engineering , Xi\u2019an Jiaotong University, Xi\u2019an, Shaanxi 710049, China","Key Laboratory of Intelligent Networks and Network Security (Xi\u2019an Jiaotong University), Ministry of Education , Xi\u2019an, Shaanxi 710049, China"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, School of Electronic and Information Engineering , Xi\u2019an Jiaotong University, Xi\u2019an, Shaanxi 710049, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Key Laboratory of Intelligent Networks and Network Security (Xi\u2019an Jiaotong University), Ministry of Education , Xi\u2019an, Shaanxi 710049, China","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077681143","display_name":"Antonio Jimeno Yepes","orcid":"https://orcid.org/0000-0002-6581-094X"},"institutions":[{"id":"https://openalex.org/I4210120068","display_name":"IBM Research - Australia","ror":"https://ror.org/027r3nx49","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210114115","https://openalex.org/I4210120068"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Antonio Jimeno Yepes","raw_affiliation_strings":["IBM Research Australia , Southbank, VIC 3006, Australia"],"affiliations":[{"raw_affiliation_string":"IBM Research Australia , Southbank, VIC 3006, Australia","institution_ids":["https://openalex.org/I4210120068"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034561377","display_name":"Zhang Zai","orcid":"https://orcid.org/0000-0003-2316-924X"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zai Zhang","raw_affiliation_strings":["Department of Computer Science and Technology, School of Electronic and Information Engineering , Xi\u2019an Jiaotong University, Xi\u2019an, Shaanxi 710049, China"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, School of Electronic and Information Engineering , Xi\u2019an Jiaotong University, Xi\u2019an, Shaanxi 710049, China","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041083459","display_name":"Qinghua Zheng","orcid":"https://orcid.org/0000-0002-8436-4754"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qinghua Zheng","raw_affiliation_strings":["Department of Computer Science and Technology, School of Electronic and Information Engineering , Xi\u2019an Jiaotong University, Xi\u2019an, Shaanxi 710049, China","National Engineering Lab for Big Data Analytics , Xi\u2019an Jiaotong University, Xi\u2019an, Shaanxi 710049, China"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, School of Electronic and Information Engineering , Xi\u2019an Jiaotong University, Xi\u2019an, Shaanxi 710049, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"National Engineering Lab for Big Data Analytics , Xi\u2019an Jiaotong University, Xi\u2019an, Shaanxi 710049, China","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049776440","display_name":"Xiangrong Zhang","orcid":"https://orcid.org/0000-0003-0379-2042"},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiangrong Zhang","raw_affiliation_strings":["Key Laboratory of Intelligent Perception and Image Understanding of Ministry of Education , School of Artificial Intelligence, Xidian University, Xi'an, 710071, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Intelligent Perception and Image Understanding of Ministry of Education , School of Artificial Intelligence, Xidian University, Xi'an, 710071, China","institution_ids":["https://openalex.org/I149594827"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100369793","display_name":"Chen Li","orcid":"https://orcid.org/0000-0002-0079-3106"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Chen Li","raw_affiliation_strings":["Department of Computer Science and Technology, School of Electronic and Information Engineering , Xi\u2019an Jiaotong University, Xi\u2019an, Shaanxi 710049, China","National Engineering Lab for Big Data Analytics , Xi\u2019an Jiaotong University, Xi\u2019an, Shaanxi 710049, China"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, School of Electronic and Information Engineering , Xi\u2019an Jiaotong University, Xi\u2019an, Shaanxi 710049, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"National Engineering Lab for Big Data Analytics , Xi\u2019an Jiaotong University, Xi\u2019an, Shaanxi 710049, China","institution_ids":["https://openalex.org/I87445476"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5100369793"],"corresponding_institution_ids":["https://openalex.org/I87445476"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.2557,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.55714699,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"36","issue":"2","first_page":"611","last_page":"620"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.989799976348877,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7908188700675964},{"id":"https://openalex.org/keywords/paraphrase","display_name":"Paraphrase","score":0.6779711842536926},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.6051028370857239},{"id":"https://openalex.org/keywords/event","display_name":"Event (particle physics)","score":0.5506234169006348},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5022203922271729},{"id":"https://openalex.org/keywords/statement","display_name":"Statement (logic)","score":0.4793879985809326},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.45596474409103394},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4356972873210907},{"id":"https://openalex.org/keywords/database-normalization","display_name":"Database normalization","score":0.42899948358535767},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.40477994084358215},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.34704333543777466},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.1828792691230774}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7908188700675964},{"id":"https://openalex.org/C2780922921","wikidata":"https://www.wikidata.org/wiki/Q255189","display_name":"Paraphrase","level":2,"score":0.6779711842536926},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.6051028370857239},{"id":"https://openalex.org/C2779662365","wikidata":"https://www.wikidata.org/wiki/Q5416694","display_name":"Event (particle physics)","level":2,"score":0.5506234169006348},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5022203922271729},{"id":"https://openalex.org/C2777026412","wikidata":"https://www.wikidata.org/wiki/Q2684591","display_name":"Statement (logic)","level":2,"score":0.4793879985809326},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.45596474409103394},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4356972873210907},{"id":"https://openalex.org/C162984825","wikidata":"https://www.wikidata.org/wiki/Q339072","display_name":"Database normalization","level":3,"score":0.42899948358535767},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.40477994084358215},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.34704333543777466},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.1828792691230774},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btz571","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz571","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31350561","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31350561","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.699999988079071}],"awards":[{"id":"https://openalex.org/G6547297614","display_name":null,"funder_award_id":"61772409","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7618720840","display_name":null,"funder_award_id":"2018YFC0910404","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320330193","display_name":"Chinese Academy of Engineering","ror":"https://ror.org/00z3yke57"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W1964670939","https://openalex.org/W2043764521","https://openalex.org/W2064030835","https://openalex.org/W2092896701","https://openalex.org/W2094726706","https://openalex.org/W2103017472","https://openalex.org/W2114363816","https://openalex.org/W2154139219","https://openalex.org/W2295598076","https://openalex.org/W2493916176","https://openalex.org/W2512456704","https://openalex.org/W2543238710","https://openalex.org/W2604808360","https://openalex.org/W2863750952","https://openalex.org/W2884165257","https://openalex.org/W2914874661","https://openalex.org/W3102476541","https://openalex.org/W4233120011"],"related_works":["https://openalex.org/W2145362441","https://openalex.org/W2582603276","https://openalex.org/W2000153057","https://openalex.org/W2175373041","https://openalex.org/W4386281023","https://openalex.org/W4312138714","https://openalex.org/W2012771827","https://openalex.org/W2113286112","https://openalex.org/W3102910059","https://openalex.org/W2904308980"],"abstract_inverted_index":{"The":[0],"source":[1],"code":[2],"is":[3,13],"available":[4,14],"at":[5],"the":[6],"gitlab":[7],"repository":[8],"https://gitlab.com/BioAI/leen":[9],"and":[10],"BioASQvec":[11],"Plus":[12],"on":[15],"figshare":[16],"https://figshare.com/s/45896c31d10c3f6d857a.":[17]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
