{"id":"https://openalex.org/W2962240242","doi":"https://doi.org/10.1093/bioinformatics/btz553","title":"VeriNA3d: an R package for nucleic acids data mining","display_name":"VeriNA3d: an R package for nucleic acids data mining","publication_year":2019,"publication_date":"2019-07-06","ids":{"openalex":"https://openalex.org/W2962240242","doi":"https://doi.org/10.1093/bioinformatics/btz553","mag":"2962240242","pmid":"https://pubmed.ncbi.nlm.nih.gov/31286135"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz553","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz553","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020461674","display_name":"Diego Gallego","orcid":"https://orcid.org/0000-0001-6165-4575"},"institutions":[{"id":"https://openalex.org/I4210122345","display_name":"Institute for Research in Biomedicine","ror":"https://ror.org/01z1gye03","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210122345","https://openalex.org/I4210132884","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Diego Gallego","raw_affiliation_strings":["Computational Biology Node, Institute for Research in Biomedicine (IRB Barcelona) , The Barcelona Institute of Science and Technology","Department of Biochemistry and Biomedicine, Faculty of Biology, University of Barcelona , Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Computational Biology Node, Institute for Research in Biomedicine (IRB Barcelona) , The Barcelona Institute of Science and Technology","institution_ids":["https://openalex.org/I4210122345"]},{"raw_affiliation_string":"Department of Biochemistry and Biomedicine, Faculty of Biology, University of Barcelona , Barcelona, Spain","institution_ids":["https://openalex.org/I71999127"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017165220","display_name":"Leonardo Darr\u00e9","orcid":"https://orcid.org/0000-0001-5280-8579"},"institutions":[{"id":"https://openalex.org/I4210122345","display_name":"Institute for Research in Biomedicine","ror":"https://ror.org/01z1gye03","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210122345","https://openalex.org/I4210132884","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I4210156231","display_name":"Institut Pasteur de Montevideo","ror":"https://ror.org/04dpm2z73","country_code":"UY","type":"facility","lineage":["https://openalex.org/I4210156231"]}],"countries":["ES","UY"],"is_corresponding":false,"raw_author_name":"Leonardo Darr\u00e9","raw_affiliation_strings":["Computational Biology Node, Institute for Research in Biomedicine (IRB Barcelona) , The Barcelona Institute of Science and Technology","Functional Genomics Laboratory and Biomolecular Simulations Laboratory, Institute Pasteur of Montevideo , Montevideo, Uruguay"],"affiliations":[{"raw_affiliation_string":"Computational Biology Node, Institute for Research in Biomedicine (IRB Barcelona) , The Barcelona Institute of Science and Technology","institution_ids":["https://openalex.org/I4210122345"]},{"raw_affiliation_string":"Functional Genomics Laboratory and Biomolecular Simulations Laboratory, Institute Pasteur of Montevideo , Montevideo, Uruguay","institution_ids":["https://openalex.org/I4210156231"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050161114","display_name":"Pablo D. Dans","orcid":"https://orcid.org/0000-0002-5927-372X"},"institutions":[{"id":"https://openalex.org/I4210122345","display_name":"Institute for Research in Biomedicine","ror":"https://ror.org/01z1gye03","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210122345","https://openalex.org/I4210132884","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Pablo D Dans","raw_affiliation_strings":["Computational Biology Node, Institute for Research in Biomedicine (IRB Barcelona) , The Barcelona Institute of Science and Technology"],"affiliations":[{"raw_affiliation_string":"Computational Biology Node, Institute for Research in Biomedicine (IRB Barcelona) , The Barcelona Institute of Science and Technology","institution_ids":["https://openalex.org/I4210122345"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006399866","display_name":"Modesto Orozco","orcid":"https://orcid.org/0000-0002-8608-3278"},"institutions":[{"id":"https://openalex.org/I4210122345","display_name":"Institute for Research in Biomedicine","ror":"https://ror.org/01z1gye03","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210122345","https://openalex.org/I4210132884","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Modesto Orozco","raw_affiliation_strings":["Computational Biology Node, Institute for Research in Biomedicine (IRB Barcelona) , The Barcelona Institute of Science and Technology","Department of Biochemistry and Biomedicine, Faculty of Biology, University of Barcelona , Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Computational Biology Node, Institute for Research in Biomedicine (IRB Barcelona) , The Barcelona Institute of Science and Technology","institution_ids":["https://openalex.org/I4210122345"]},{"raw_affiliation_string":"Department of Biochemistry and Biomedicine, Faculty of Biology, University of Barcelona , Barcelona, Spain","institution_ids":["https://openalex.org/I71999127"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5006399866","https://openalex.org/A5050161114"],"corresponding_institution_ids":["https://openalex.org/I4210122345","https://openalex.org/I71999127"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.257,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.5621765,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"35","issue":"24","first_page":"5334","last_page":"5336"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7572188377380371},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.7086876630783081},{"id":"https://openalex.org/keywords/nucleic-acid","display_name":"Nucleic acid","score":0.6837645769119263},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.6808831691741943},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5739871859550476},{"id":"https://openalex.org/keywords/nucleic-acid-structure","display_name":"Nucleic acid structure","score":0.4333172142505646},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.28153735399246216},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.15194520354270935},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.11279740929603577},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.058463335037231445}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7572188377380371},{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.7086876630783081},{"id":"https://openalex.org/C24107716","wikidata":"https://www.wikidata.org/wiki/Q123619","display_name":"Nucleic acid","level":2,"score":0.6837645769119263},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.6808831691741943},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5739871859550476},{"id":"https://openalex.org/C126142528","wikidata":"https://www.wikidata.org/wiki/Q3771876","display_name":"Nucleic acid structure","level":4,"score":0.4333172142505646},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.28153735399246216},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.15194520354270935},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.11279740929603577},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.058463335037231445},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btz553","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz553","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31286135","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31286135","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.5,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320310753","display_name":"Agencia Nacional de Investigaci\u00f3n e Innovaci\u00f3n","ror":"https://ror.org/03egaj678"},{"id":"https://openalex.org/F4320322121","display_name":"Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats","ror":"https://ror.org/0371hy230"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W142718297","https://openalex.org/W593797057","https://openalex.org/W1521534059","https://openalex.org/W1525955028","https://openalex.org/W1672171675","https://openalex.org/W1843054844","https://openalex.org/W1984543894","https://openalex.org/W2035334116","https://openalex.org/W2084014179","https://openalex.org/W2122774834","https://openalex.org/W2130479394","https://openalex.org/W2150404344","https://openalex.org/W2154319440","https://openalex.org/W2171563376","https://openalex.org/W2440055425","https://openalex.org/W2495290358","https://openalex.org/W2519618428","https://openalex.org/W2560571171","https://openalex.org/W2574750764","https://openalex.org/W2607174456","https://openalex.org/W2952457720","https://openalex.org/W3104468196","https://openalex.org/W6637288986"],"related_works":["https://openalex.org/W4386783509","https://openalex.org/W4296030002","https://openalex.org/W3177804739","https://openalex.org/W633173308","https://openalex.org/W67662248","https://openalex.org/W2279743539","https://openalex.org/W2071735128","https://openalex.org/W1987175900","https://openalex.org/W2587932899","https://openalex.org/W2006649932"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
