{"id":"https://openalex.org/W2960693125","doi":"https://doi.org/10.1093/bioinformatics/btz539","title":"MemBlob database and server for identifying transmembrane regions using cryo-EM maps","display_name":"MemBlob database and server for identifying transmembrane regions using cryo-EM maps","publication_year":2019,"publication_date":"2019-07-09","ids":{"openalex":"https://openalex.org/W2960693125","doi":"https://doi.org/10.1093/bioinformatics/btz539","mag":"2960693125","pmid":"https://pubmed.ncbi.nlm.nih.gov/31290936"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz539","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz539","pdf_url":"https://watermark.silverchair.com/btz539.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAArwwggK4BgkqhkiG9w0BBwagggKpMIICpQIBADCCAp4GCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQM-SbE55TxulEw_0O8AgEQgIICbysTmZmve8Ls1oHI1R5EUwY5nzuRWM9mX23JoA9aZXz_N47Q77lpipbX1g5p-JucblhGoAHcVm9EBRIcZaVm7M0YGbcgSMyvSp6E8y4JvtcKUi3z7teaAmRc88OzcBsQ7PdMWmwuWIjdJqk3V4_cd0meLTl9cyZs1yG3t2Ley4AV5vQHBe2mN2pzwEnJq8rhr-Fpi2z6oZsMUDSqZ1aYlfcVcAzRodufUjdKuqmF1lwv2OkGEap7DTyIt7x1PUrc04IeDEvtOlmG91ER_UUhf9Xukkil6CwhuRJ1tBBtYhtvCoiOHTuVabJxR-w5XG1U936sHWo66bUWw1Hnik1pODQBoAG77miyXbOJVwt7EtClsIvgCEyDa9G4GAkI0Dduxnn4aul28D3f716q4Qz1TKlqMDwkRe-JGLfb5JHmaL-TuQYDr8OFswLQNk3gTzK7IpnjKTmmK4OECoejo5du7JGjUvl3auxSFG1NENcHBCsNeUHr-TJeVtqOW4z41_J3PTGm1sFnt_5FcN44V5QIhvkah4cUwVFs2YdKDaEuxnKpvYjmxbESXD8BhUoveYz36sGbwhGamxF6MqOmreNCiFpwveaj-r92k9DpIBrTW7TFoE2yBlOpJCf2fa5vEHPYU-V0dQt_NwYvD6A31jM3X9ADFgMOomeLEsYrIn3ueCxWi4e2UkbHSofzz3W3Ksy40veKFjJTwgiBUs1yeNKWsxnadn1MgDH1KTxBZSYDVtBkZD0UhVvurWxFQ1mttiygzjjxsATMLzVZfiDJa9CIf5tPoV8Xqp0FyJ9Fo-osR-krCSKIQFrL08cgNwmoIhGC","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://watermark.silverchair.com/btz539.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAArwwggK4BgkqhkiG9w0BBwagggKpMIICpQIBADCCAp4GCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQM-SbE55TxulEw_0O8AgEQgIICbysTmZmve8Ls1oHI1R5EUwY5nzuRWM9mX23JoA9aZXz_N47Q77lpipbX1g5p-JucblhGoAHcVm9EBRIcZaVm7M0YGbcgSMyvSp6E8y4JvtcKUi3z7teaAmRc88OzcBsQ7PdMWmwuWIjdJqk3V4_cd0meLTl9cyZs1yG3t2Ley4AV5vQHBe2mN2pzwEnJq8rhr-Fpi2z6oZsMUDSqZ1aYlfcVcAzRodufUjdKuqmF1lwv2OkGEap7DTyIt7x1PUrc04IeDEvtOlmG91ER_UUhf9Xukkil6CwhuRJ1tBBtYhtvCoiOHTuVabJxR-w5XG1U936sHWo66bUWw1Hnik1pODQBoAG77miyXbOJVwt7EtClsIvgCEyDa9G4GAkI0Dduxnn4aul28D3f716q4Qz1TKlqMDwkRe-JGLfb5JHmaL-TuQYDr8OFswLQNk3gTzK7IpnjKTmmK4OECoejo5du7JGjUvl3auxSFG1NENcHBCsNeUHr-TJeVtqOW4z41_J3PTGm1sFnt_5FcN44V5QIhvkah4cUwVFs2YdKDaEuxnKpvYjmxbESXD8BhUoveYz36sGbwhGamxF6MqOmreNCiFpwveaj-r92k9DpIBrTW7TFoE2yBlOpJCf2fa5vEHPYU-V0dQt_NwYvD6A31jM3X9ADFgMOomeLEsYrIn3ueCxWi4e2UkbHSofzz3W3Ksy40veKFjJTwgiBUs1yeNKWsxnadn1MgDH1KTxBZSYDVtBkZD0UhVvurWxFQ1mttiygzjjxsATMLzVZfiDJa9CIf5tPoV8Xqp0FyJ9Fo-osR-krCSKIQFrL08cgNwmoIhGC","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018865803","display_name":"Bianka Farkas","orcid":"https://orcid.org/0000-0002-0258-6864"},"institutions":[{"id":"https://openalex.org/I101202996","display_name":"Semmelweis University","ror":"https://ror.org/01g9ty582","country_code":"HU","type":"education","lineage":["https://openalex.org/I101202996"]},{"id":"https://openalex.org/I31882830","display_name":"P\u00e1zm\u00e1ny P\u00e9ter Catholic University","ror":"https://ror.org/05v9kya57","country_code":"HU","type":"education","lineage":["https://openalex.org/I31882830"]},{"id":"https://openalex.org/I7597260","display_name":"Hungarian Academy of Sciences","ror":"https://ror.org/02ks8qq67","country_code":"HU","type":"government","lineage":["https://openalex.org/I7597260"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Bianka Farkas","raw_affiliation_strings":["Department of Biophysics and Radiation Biology, Semmelweis University , Budapest 1094, Hungary","Faculty of Information Technology and Bionics, P\u00e1zm\u00e1ny P\u00e9ter Catholic University , Budapest 1083, Hungary","MTA-SE Molecular Biophysics Research Group, Hungarian Academy of Sciences , Budapest 1094, Hungary"],"raw_orcid":"https://orcid.org/0000-0002-0258-6864","affiliations":[{"raw_affiliation_string":"Department of Biophysics and Radiation Biology, Semmelweis University , Budapest 1094, Hungary","institution_ids":["https://openalex.org/I101202996"]},{"raw_affiliation_string":"Faculty of Information Technology and Bionics, P\u00e1zm\u00e1ny P\u00e9ter Catholic University , Budapest 1083, Hungary","institution_ids":["https://openalex.org/I31882830"]},{"raw_affiliation_string":"MTA-SE Molecular Biophysics Research Group, Hungarian Academy of Sciences , Budapest 1094, Hungary","institution_ids":["https://openalex.org/I7597260"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055200171","display_name":"Georgina Csizmadia","orcid":"https://orcid.org/0000-0003-4321-9670"},"institutions":[{"id":"https://openalex.org/I101202996","display_name":"Semmelweis University","ror":"https://ror.org/01g9ty582","country_code":"HU","type":"education","lineage":["https://openalex.org/I101202996"]},{"id":"https://openalex.org/I7597260","display_name":"Hungarian Academy of Sciences","ror":"https://ror.org/02ks8qq67","country_code":"HU","type":"government","lineage":["https://openalex.org/I7597260"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Georgina Csizmadia","raw_affiliation_strings":["Department of Biophysics and Radiation Biology, Semmelweis University , Budapest 1094, Hungary","MTA-SE Molecular Biophysics Research Group, Hungarian Academy of Sciences , Budapest 1094, Hungary"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biophysics and Radiation Biology, Semmelweis University , Budapest 1094, Hungary","institution_ids":["https://openalex.org/I101202996"]},{"raw_affiliation_string":"MTA-SE Molecular Biophysics Research Group, Hungarian Academy of Sciences , Budapest 1094, Hungary","institution_ids":["https://openalex.org/I7597260"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020145400","display_name":"Eszter Katona","orcid":"https://orcid.org/0000-0001-9096-6017"},"institutions":[{"id":"https://openalex.org/I101202996","display_name":"Semmelweis University","ror":"https://ror.org/01g9ty582","country_code":"HU","type":"education","lineage":["https://openalex.org/I101202996"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB","HU"],"is_corresponding":false,"raw_author_name":"Eszter Katona","raw_affiliation_strings":["Department of Biophysics and Radiation Biology, Semmelweis University , Budapest 1094, Hungary","Faculty of Brain Sciences, University College London , London W1T 7NF, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biophysics and Radiation Biology, Semmelweis University , Budapest 1094, Hungary","institution_ids":["https://openalex.org/I101202996"]},{"raw_affiliation_string":"Faculty of Brain Sciences, University College London , London W1T 7NF, UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025649527","display_name":"G\u00e1bor Tusn\u00e1dy","orcid":"https://orcid.org/0000-0001-8105-0285"},"institutions":[{"id":"https://openalex.org/I4210151515","display_name":"Institute of Molecular Life Sciences","ror":"https://ror.org/04t4pws42","country_code":"HU","type":"facility","lineage":["https://openalex.org/I4210151515","https://openalex.org/I4387152226","https://openalex.org/I80251312"]},{"id":"https://openalex.org/I7597260","display_name":"Hungarian Academy of Sciences","ror":"https://ror.org/02ks8qq67","country_code":"HU","type":"government","lineage":["https://openalex.org/I7597260"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"G\u00e1bor E Tusn\u00e1dy","raw_affiliation_strings":["\u2018Momentum\u2019 Membrane Protein Bioinformatics Research Group, Institute of Enzymology , RCNS, Hungarian Academy of Sciences, 1117 Budapest, Hungary"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"\u2018Momentum\u2019 Membrane Protein Bioinformatics Research Group, Institute of Enzymology , RCNS, Hungarian Academy of Sciences, 1117 Budapest, Hungary","institution_ids":["https://openalex.org/I4210151515","https://openalex.org/I7597260"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031681098","display_name":"Tam\u00e1s Heged\u0171s","orcid":"https://orcid.org/0000-0002-5195-749X"},"institutions":[{"id":"https://openalex.org/I101202996","display_name":"Semmelweis University","ror":"https://ror.org/01g9ty582","country_code":"HU","type":"education","lineage":["https://openalex.org/I101202996"]},{"id":"https://openalex.org/I7597260","display_name":"Hungarian Academy of Sciences","ror":"https://ror.org/02ks8qq67","country_code":"HU","type":"government","lineage":["https://openalex.org/I7597260"]}],"countries":["HU"],"is_corresponding":true,"raw_author_name":"Tam\u00e1s Heged\u0171s","raw_affiliation_strings":["Department of Biophysics and Radiation Biology, Semmelweis University , Budapest 1094, Hungary","MTA-SE Molecular Biophysics Research Group, Hungarian Academy of Sciences , Budapest 1094, Hungary"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biophysics and Radiation Biology, Semmelweis University , Budapest 1094, Hungary","institution_ids":["https://openalex.org/I101202996"]},{"raw_affiliation_string":"MTA-SE Molecular Biophysics Research Group, Hungarian Academy of Sciences , Budapest 1094, Hungary","institution_ids":["https://openalex.org/I7597260"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5031681098"],"corresponding_institution_ids":["https://openalex.org/I101202996","https://openalex.org/I7597260"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.8678,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.81939605,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"36","issue":"8","first_page":"2595","last_page":"2598"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.8291000127792358,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.8291000127792358,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10407","display_name":"Lipid Membrane Structure and Behavior","score":0.08370000123977661,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.01119999960064888,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transmembrane-protein","display_name":"Transmembrane protein","score":0.6870013475418091},{"id":"https://openalex.org/keywords/cryo-electron-microscopy","display_name":"Cryo-electron microscopy","score":0.6149462461471558},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6139490008354187},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5923398733139038},{"id":"https://openalex.org/keywords/lipid-bilayer","display_name":"Lipid bilayer","score":0.5617283582687378},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5040990114212036},{"id":"https://openalex.org/keywords/transmembrane-domain","display_name":"Transmembrane domain","score":0.4946300685405731},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.45036765933036804},{"id":"https://openalex.org/keywords/membrane-protein","display_name":"Membrane protein","score":0.44209471344947815},{"id":"https://openalex.org/keywords/orientation","display_name":"Orientation (vector space)","score":0.4306320250034332},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.39209994673728943},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.37249964475631714},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.350265771150589},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34453219175338745},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.33123552799224854},{"id":"https://openalex.org/keywords/membrane","display_name":"Membrane","score":0.25811684131622314},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2092740833759308},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.15504813194274902},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.12947165966033936}],"concepts":[{"id":"https://openalex.org/C24530287","wikidata":"https://www.wikidata.org/wiki/Q424204","display_name":"Transmembrane protein","level":3,"score":0.6870013475418091},{"id":"https://openalex.org/C20702342","wikidata":"https://www.wikidata.org/wiki/Q5190506","display_name":"Cryo-electron microscopy","level":2,"score":0.6149462461471558},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6139490008354187},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5923398733139038},{"id":"https://openalex.org/C39944091","wikidata":"https://www.wikidata.org/wiki/Q423279","display_name":"Lipid bilayer","level":3,"score":0.5617283582687378},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5040990114212036},{"id":"https://openalex.org/C118892022","wikidata":"https://www.wikidata.org/wiki/Q7834587","display_name":"Transmembrane domain","level":3,"score":0.4946300685405731},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.45036765933036804},{"id":"https://openalex.org/C144647389","wikidata":"https://www.wikidata.org/wiki/Q423042","display_name":"Membrane protein","level":3,"score":0.44209471344947815},{"id":"https://openalex.org/C16345878","wikidata":"https://www.wikidata.org/wiki/Q107472979","display_name":"Orientation (vector space)","level":2,"score":0.4306320250034332},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.39209994673728943},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.37249964475631714},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.350265771150589},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34453219175338745},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.33123552799224854},{"id":"https://openalex.org/C41625074","wikidata":"https://www.wikidata.org/wiki/Q176088","display_name":"Membrane","level":2,"score":0.25811684131622314},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2092740833759308},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.15504813194274902},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.12947165966033936},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020285","descriptor_name":"Cryoelectron Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020285","descriptor_name":"Cryoelectron Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020285","descriptor_name":"Cryoelectron Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btz539","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz539","pdf_url":"https://watermark.silverchair.com/btz539.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAArwwggK4BgkqhkiG9w0BBwagggKpMIICpQIBADCCAp4GCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQM-SbE55TxulEw_0O8AgEQgIICbysTmZmve8Ls1oHI1R5EUwY5nzuRWM9mX23JoA9aZXz_N47Q77lpipbX1g5p-JucblhGoAHcVm9EBRIcZaVm7M0YGbcgSMyvSp6E8y4JvtcKUi3z7teaAmRc88OzcBsQ7PdMWmwuWIjdJqk3V4_cd0meLTl9cyZs1yG3t2Ley4AV5vQHBe2mN2pzwEnJq8rhr-Fpi2z6oZsMUDSqZ1aYlfcVcAzRodufUjdKuqmF1lwv2OkGEap7DTyIt7x1PUrc04IeDEvtOlmG91ER_UUhf9Xukkil6CwhuRJ1tBBtYhtvCoiOHTuVabJxR-w5XG1U936sHWo66bUWw1Hnik1pODQBoAG77miyXbOJVwt7EtClsIvgCEyDa9G4GAkI0Dduxnn4aul28D3f716q4Qz1TKlqMDwkRe-JGLfb5JHmaL-TuQYDr8OFswLQNk3gTzK7IpnjKTmmK4OECoejo5du7JGjUvl3auxSFG1NENcHBCsNeUHr-TJeVtqOW4z41_J3PTGm1sFnt_5FcN44V5QIhvkah4cUwVFs2YdKDaEuxnKpvYjmxbESXD8BhUoveYz36sGbwhGamxF6MqOmreNCiFpwveaj-r92k9DpIBrTW7TFoE2yBlOpJCf2fa5vEHPYU-V0dQt_NwYvD6A31jM3X9ADFgMOomeLEsYrIn3ueCxWi4e2UkbHSofzz3W3Ksy40veKFjJTwgiBUs1yeNKWsxnadn1MgDH1KTxBZSYDVtBkZD0UhVvurWxFQ1mttiygzjjxsATMLzVZfiDJa9CIf5tPoV8Xqp0FyJ9Fo-osR-krCSKIQFrL08cgNwmoIhGC","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31290936","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31290936","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7178402","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7178402","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz539","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz539","pdf_url":"https://watermark.silverchair.com/btz539.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAArwwggK4BgkqhkiG9w0BBwagggKpMIICpQIBADCCAp4GCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQM-SbE55TxulEw_0O8AgEQgIICbysTmZmve8Ls1oHI1R5EUwY5nzuRWM9mX23JoA9aZXz_N47Q77lpipbX1g5p-JucblhGoAHcVm9EBRIcZaVm7M0YGbcgSMyvSp6E8y4JvtcKUi3z7teaAmRc88OzcBsQ7PdMWmwuWIjdJqk3V4_cd0meLTl9cyZs1yG3t2Ley4AV5vQHBe2mN2pzwEnJq8rhr-Fpi2z6oZsMUDSqZ1aYlfcVcAzRodufUjdKuqmF1lwv2OkGEap7DTyIt7x1PUrc04IeDEvtOlmG91ER_UUhf9Xukkil6CwhuRJ1tBBtYhtvCoiOHTuVabJxR-w5XG1U936sHWo66bUWw1Hnik1pODQBoAG77miyXbOJVwt7EtClsIvgCEyDa9G4GAkI0Dduxnn4aul28D3f716q4Qz1TKlqMDwkRe-JGLfb5JHmaL-TuQYDr8OFswLQNk3gTzK7IpnjKTmmK4OECoejo5du7JGjUvl3auxSFG1NENcHBCsNeUHr-TJeVtqOW4z41_J3PTGm1sFnt_5FcN44V5QIhvkah4cUwVFs2YdKDaEuxnKpvYjmxbESXD8BhUoveYz36sGbwhGamxF6MqOmreNCiFpwveaj-r92k9DpIBrTW7TFoE2yBlOpJCf2fa5vEHPYU-V0dQt_NwYvD6A31jM3X9ADFgMOomeLEsYrIn3ueCxWi4e2UkbHSofzz3W3Ksy40veKFjJTwgiBUs1yeNKWsxnadn1MgDH1KTxBZSYDVtBkZD0UhVvurWxFQ1mttiygzjjxsATMLzVZfiDJa9CIf5tPoV8Xqp0FyJ9Fo-osR-krCSKIQFrL08cgNwmoIhGC","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4300000071525574,"display_name":"Clean water and sanitation","id":"https://metadata.un.org/sdg/6"}],"awards":[{"id":"https://openalex.org/G2721596805","display_name":null,"funder_award_id":"K127961","funder_id":"https://openalex.org/F4320336675","funder_display_name":"National Research, Development and Innovation Office"},{"id":"https://openalex.org/G3659244340","display_name":null,"funder_award_id":"HEGEDU18I0","funder_id":"https://openalex.org/F4320306168","funder_display_name":"Cystic Fibrosis Foundation"},{"id":"https://openalex.org/G6837216666","display_name":null,"funder_award_id":"K125607","funder_id":"https://openalex.org/F4320336675","funder_display_name":"National Research, Development and Innovation Office"},{"id":"https://openalex.org/G7583955365","display_name":null,"funder_award_id":"K111678","funder_id":"https://openalex.org/F4320336675","funder_display_name":"National Research, Development and Innovation Office"},{"id":"https://openalex.org/G8245899473","display_name":null,"funder_award_id":"CFF HEGEDU18I0","funder_id":"https://openalex.org/F4320306168","funder_display_name":"Cystic Fibrosis Foundation"},{"id":"https://openalex.org/G974913616","display_name":null,"funder_award_id":"K119287","funder_id":"https://openalex.org/F4320336675","funder_display_name":"National Research, Development and Innovation Office"}],"funders":[{"id":"https://openalex.org/F4320306168","display_name":"Cystic Fibrosis Foundation","ror":"https://ror.org/00ax59295"},{"id":"https://openalex.org/F4320321102","display_name":"Semmelweis Egyetem","ror":"https://ror.org/01g9ty582"},{"id":"https://openalex.org/F4320336675","display_name":"National Research, Development and Innovation Office","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2960693125.pdf","grobid_xml":"https://content.openalex.org/works/W2960693125.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W1493374012","https://openalex.org/W1493986448","https://openalex.org/W1528658828","https://openalex.org/W2008708467","https://openalex.org/W2009113911","https://openalex.org/W2011301426","https://openalex.org/W2029653438","https://openalex.org/W2089638270","https://openalex.org/W2099567685","https://openalex.org/W2105537627","https://openalex.org/W2129838159","https://openalex.org/W2130479394","https://openalex.org/W2132629607","https://openalex.org/W2140047797","https://openalex.org/W2140831051","https://openalex.org/W2150853746","https://openalex.org/W2162274915","https://openalex.org/W2164659462","https://openalex.org/W2170711116","https://openalex.org/W2244890058","https://openalex.org/W2258885744","https://openalex.org/W2558217333","https://openalex.org/W2572480523","https://openalex.org/W2602180809","https://openalex.org/W2884376935","https://openalex.org/W2897728792","https://openalex.org/W2952857611"],"related_works":["https://openalex.org/W3099772455","https://openalex.org/W3172198228","https://openalex.org/W2129301794","https://openalex.org/W1986078734","https://openalex.org/W1974240269","https://openalex.org/W2062258289","https://openalex.org/W1992657771","https://openalex.org/W2040208869","https://openalex.org/W2155932650","https://openalex.org/W2036123216"],"abstract_inverted_index":{"SUMMARY:":[0],"The":[1],"identification":[2],"of":[3,17,31,65,82],"transmembrane":[4,7],"helices":[5],"in":[6,40,87],"proteins":[8],"is":[9,38],"crucial,":[10],"not":[11,49],"only":[12],"to":[13,21,94,122,125],"understand":[14],"their":[15],"mechanism":[16],"action":[18],"but":[19],"also":[20],"develop":[22],"new":[23],"therapies.":[24],"While":[25],"experimental":[26],"data":[27,128,140],"on":[28,107],"the":[29,63,69,74,91,95,102],"boundaries":[30],"membrane-embedded":[32],"regions":[33],"are":[34,141],"sparse,":[35],"this":[36,108,127],"information":[37],"present":[39],"cryo-electron":[41],"microscopy":[42],"(cryo-EM)":[43],"density":[44],"maps":[45],"and":[46,73,101,119],"it":[47],"has":[48],"been":[50],"utilized":[51],"yet":[52],"for":[53,129],"determining":[54],"membrane":[55],"regions.":[56],"We":[57],"developed":[58],"a":[59,66,83,112,120],"computational":[60],"pipeline,":[61],"where":[62],"inputs":[64],"cryo-EM":[67,116],"map,":[68],"corresponding":[70],"atomistic":[71],"structure,":[72],"potential":[75],"bilayer":[76],"orientation":[77],"determined":[78],"by":[79],"TMDET":[80],"algorithm":[81],"given":[84],"protein":[85,117],"result":[86],"an":[88],"output":[89],"defining":[90],"residues":[92],"assigned":[93],"bulk":[96],"water":[97],"phase,":[98],"lipid":[99,103],"interface":[100],"hydrophobic":[104],"core.":[105],"Based":[106],"method,":[109],"we":[110],"built":[111],"database":[113],"involving":[114],"published":[115],"structures":[118],"server":[121],"be":[123],"able":[124],"compute":[126],"newly":[130],"obtained":[131],"structures.":[132],"AVAILABILITY":[133],"AND":[134],"IMPLEMENTATION:":[135],"http://memblob.hegelab.org.":[136],"SUPPLEMENTARY":[137],"INFORMATION:":[138],"Supplementary":[139],"available":[142],"at":[143],"Bioinformatics":[144],"online.":[145]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3}],"updated_date":"2026-08-09T07:27:16.801131","created_date":"2025-10-10T00:00:00"}
