{"id":"https://openalex.org/W2954519497","doi":"https://doi.org/10.1093/bioinformatics/btz537","title":"circDeep: deep learning approach for circular RNA classification from other long non-coding RNA","display_name":"circDeep: deep learning approach for circular RNA classification from other long non-coding RNA","publication_year":2019,"publication_date":"2019-07-02","ids":{"openalex":"https://openalex.org/W2954519497","doi":"https://doi.org/10.1093/bioinformatics/btz537","mag":"2954519497","pmid":"https://pubmed.ncbi.nlm.nih.gov/31268128"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz537","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz537","pdf_url":"https://watermark.silverchair.com/btz537.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAArwwggK4BgkqhkiG9w0BBwagggKpMIICpQIBADCCAp4GCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQMp6Ijtvy0qiPNeXLSAgEQgIICb1DD-gWBfemo7LO9bV9a3q4O4Vh3GttsY2dfCl9Hcg6WE64DBQ_c6GYKHXaZau9TPYvT5Zc3yExbIb1WH4b2PmHdsMnFqXrIjfyQakIPpm49fBJZhxbvKIPvFCsflhMbhjXJiF8UwfdsyoFGIFWGCOyHUeyIUq4Fbx0LxWBMMbFpd4AqWyDvjRX6h_dO_yxqSP-C8PTQb6RJJaPD8cah9xVjN7hOzkBi_gjmvMM26m8fvaATtXhREx_sK7dYJrDJFppWRx3p1Z4O42aMxQLvUo7zJlvqxWc8tJfly-dn3Vc2q867oYcqzjAaGSW1ipHSRPqKLS4vygjToYHmZVry74D0tvUDAVbYWKeK6kGsTDVLaN8oeEl-xmWdntDJw0fTQyILJaGxqvWQaRUnFZD5IqRWoyoZX17OLlVys87Uxdutqe9lj7YHpMIQOwsaPYacSqn7BkirOG0r6RpFUQCmw4StaPVYujhnmqtQjfN7oRb6rL4NMFQ_mp2S-yuhfgr9hmtJkBiN8QezQ8UrMpdfUeg7ez3ZBlfHz1ERlbdKoqxwN2egwbmfF_uo1DPdxzrF3Ptyz61rmddVXQPXERQuqdZW034UxiXLAxA8pjhSUrB0v3U_VpHtPzcEph4oQF7RcYbh9P_jHigZ4yaHNB3MEaMS5r4iAGuXa57T82Ahhy3RcXM7o_x2TVDw_C06cwAl5iyC6Dp4vlcPyAF5DUNpwZ7hT5O-6MNORs1e-Jp3t7Won4y7Yh0aQr_q5ddtslFvBB7nEgeu9-9pOYCx3ek4kRDurhisiQhDhtt1gm2sjVd4mYBQ4xfpwJe4knXyy6mO","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://watermark.silverchair.com/btz537.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAArwwggK4BgkqhkiG9w0BBwagggKpMIICpQIBADCCAp4GCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQMp6Ijtvy0qiPNeXLSAgEQgIICb1DD-gWBfemo7LO9bV9a3q4O4Vh3GttsY2dfCl9Hcg6WE64DBQ_c6GYKHXaZau9TPYvT5Zc3yExbIb1WH4b2PmHdsMnFqXrIjfyQakIPpm49fBJZhxbvKIPvFCsflhMbhjXJiF8UwfdsyoFGIFWGCOyHUeyIUq4Fbx0LxWBMMbFpd4AqWyDvjRX6h_dO_yxqSP-C8PTQb6RJJaPD8cah9xVjN7hOzkBi_gjmvMM26m8fvaATtXhREx_sK7dYJrDJFppWRx3p1Z4O42aMxQLvUo7zJlvqxWc8tJfly-dn3Vc2q867oYcqzjAaGSW1ipHSRPqKLS4vygjToYHmZVry74D0tvUDAVbYWKeK6kGsTDVLaN8oeEl-xmWdntDJw0fTQyILJaGxqvWQaRUnFZD5IqRWoyoZX17OLlVys87Uxdutqe9lj7YHpMIQOwsaPYacSqn7BkirOG0r6RpFUQCmw4StaPVYujhnmqtQjfN7oRb6rL4NMFQ_mp2S-yuhfgr9hmtJkBiN8QezQ8UrMpdfUeg7ez3ZBlfHz1ERlbdKoqxwN2egwbmfF_uo1DPdxzrF3Ptyz61rmddVXQPXERQuqdZW034UxiXLAxA8pjhSUrB0v3U_VpHtPzcEph4oQF7RcYbh9P_jHigZ4yaHNB3MEaMS5r4iAGuXa57T82Ahhy3RcXM7o_x2TVDw_C06cwAl5iyC6Dp4vlcPyAF5DUNpwZ7hT5O-6MNORs1e-Jp3t7Won4y7Yh0aQr_q5ddtslFvBB7nEgeu9-9pOYCx3ek4kRDurhisiQhDhtt1gm2sjVd4mYBQ4xfpwJe4knXyy6mO","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058889756","display_name":"Mohamed Chaabane","orcid":"https://orcid.org/0000-0002-6831-5530"},"institutions":[{"id":"https://openalex.org/I142740786","display_name":"University of Louisville","ror":"https://ror.org/01ckdn478","country_code":"US","type":"education","lineage":["https://openalex.org/I142740786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mohamed Chaabane","raw_affiliation_strings":["Department of Computer Engineering and Computer Science , Louisville, KY 40208, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Engineering and Computer Science , Louisville, KY 40208, USA","institution_ids":["https://openalex.org/I142740786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002113213","display_name":"Robert M. Williams","orcid":"https://orcid.org/0000-0001-9063-1284"},"institutions":[{"id":"https://openalex.org/I142740786","display_name":"University of Louisville","ror":"https://ror.org/01ckdn478","country_code":"US","type":"education","lineage":["https://openalex.org/I142740786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert M Williams","raw_affiliation_strings":["Department of Computer Engineering and Computer Science , Louisville, KY 40208, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Engineering and Computer Science , Louisville, KY 40208, USA","institution_ids":["https://openalex.org/I142740786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014531387","display_name":"Austin T Stephens","orcid":null},"institutions":[{"id":"https://openalex.org/I142740786","display_name":"University of Louisville","ror":"https://ror.org/01ckdn478","country_code":"US","type":"education","lineage":["https://openalex.org/I142740786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Austin T Stephens","raw_affiliation_strings":["Department of Computer Engineering and Computer Science , Louisville, KY 40208, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Engineering and Computer Science , Louisville, KY 40208, USA","institution_ids":["https://openalex.org/I142740786"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054939689","display_name":"Juw Won Park","orcid":"https://orcid.org/0000-0002-4610-6893"},"institutions":[{"id":"https://openalex.org/I142740786","display_name":"University of Louisville","ror":"https://ror.org/01ckdn478","country_code":"US","type":"education","lineage":["https://openalex.org/I142740786"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Juw Won Park","raw_affiliation_strings":["Department of Computer Engineering and Computer Science , Louisville, KY 40208, USA","KBRIN Bioinformatics Core, University of Louisville , Louisville, KY 40208, USA"],"raw_orcid":"https://orcid.org/0000-0002-4610-6893","affiliations":[{"raw_affiliation_string":"Department of Computer Engineering and Computer Science , Louisville, KY 40208, USA","institution_ids":["https://openalex.org/I142740786"]},{"raw_affiliation_string":"KBRIN Bioinformatics Core, University of Louisville , Louisville, KY 40208, USA","institution_ids":["https://openalex.org/I142740786"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5054939689"],"corresponding_institution_ids":["https://openalex.org/I142740786"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":3.1944,"has_fulltext":true,"cited_by_count":97,"citation_normalized_percentile":{"value":0.9317045,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"36","issue":"1","first_page":"73","last_page":"80"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.828000009059906,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.828000009059906,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.15680000185966492,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.0015999999595806003,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/circular-rna","display_name":"Circular RNA","score":0.9070991277694702},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.668663740158081},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5367238521575928},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5344333648681641},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.5049903988838196},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.46934759616851807},{"id":"https://openalex.org/keywords/non-coding-rna","display_name":"Non-coding RNA","score":0.43354180455207825},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.364530086517334},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.32985448837280273},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2763967216014862},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2315044403076172},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.09847873449325562}],"concepts":[{"id":"https://openalex.org/C2775893923","wikidata":"https://www.wikidata.org/wiki/Q17113455","display_name":"Circular RNA","level":4,"score":0.9070991277694702},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.668663740158081},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5367238521575928},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5344333648681641},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.5049903988838196},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.46934759616851807},{"id":"https://openalex.org/C194993378","wikidata":"https://www.wikidata.org/wiki/Q427087","display_name":"Non-coding RNA","level":4,"score":0.43354180455207825},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.364530086517334},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.32985448837280273},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2763967216014862},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2315044403076172},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.09847873449325562},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btz537","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz537","pdf_url":"https://watermark.silverchair.com/btz537.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAArwwggK4BgkqhkiG9w0BBwagggKpMIICpQIBADCCAp4GCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQMp6Ijtvy0qiPNeXLSAgEQgIICb1DD-gWBfemo7LO9bV9a3q4O4Vh3GttsY2dfCl9Hcg6WE64DBQ_c6GYKHXaZau9TPYvT5Zc3yExbIb1WH4b2PmHdsMnFqXrIjfyQakIPpm49fBJZhxbvKIPvFCsflhMbhjXJiF8UwfdsyoFGIFWGCOyHUeyIUq4Fbx0LxWBMMbFpd4AqWyDvjRX6h_dO_yxqSP-C8PTQb6RJJaPD8cah9xVjN7hOzkBi_gjmvMM26m8fvaATtXhREx_sK7dYJrDJFppWRx3p1Z4O42aMxQLvUo7zJlvqxWc8tJfly-dn3Vc2q867oYcqzjAaGSW1ipHSRPqKLS4vygjToYHmZVry74D0tvUDAVbYWKeK6kGsTDVLaN8oeEl-xmWdntDJw0fTQyILJaGxqvWQaRUnFZD5IqRWoyoZX17OLlVys87Uxdutqe9lj7YHpMIQOwsaPYacSqn7BkirOG0r6RpFUQCmw4StaPVYujhnmqtQjfN7oRb6rL4NMFQ_mp2S-yuhfgr9hmtJkBiN8QezQ8UrMpdfUeg7ez3ZBlfHz1ERlbdKoqxwN2egwbmfF_uo1DPdxzrF3Ptyz61rmddVXQPXERQuqdZW034UxiXLAxA8pjhSUrB0v3U_VpHtPzcEph4oQF7RcYbh9P_jHigZ4yaHNB3MEaMS5r4iAGuXa57T82Ahhy3RcXM7o_x2TVDw_C06cwAl5iyC6Dp4vlcPyAF5DUNpwZ7hT5O-6MNORs1e-Jp3t7Won4y7Yh0aQr_q5ddtslFvBB7nEgeu9-9pOYCx3ek4kRDurhisiQhDhtt1gm2sjVd4mYBQ4xfpwJe4knXyy6mO","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31268128","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31268128","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:5915562","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6956777","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz537","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz537","pdf_url":"https://watermark.silverchair.com/btz537.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAArwwggK4BgkqhkiG9w0BBwagggKpMIICpQIBADCCAp4GCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQMp6Ijtvy0qiPNeXLSAgEQgIICb1DD-gWBfemo7LO9bV9a3q4O4Vh3GttsY2dfCl9Hcg6WE64DBQ_c6GYKHXaZau9TPYvT5Zc3yExbIb1WH4b2PmHdsMnFqXrIjfyQakIPpm49fBJZhxbvKIPvFCsflhMbhjXJiF8UwfdsyoFGIFWGCOyHUeyIUq4Fbx0LxWBMMbFpd4AqWyDvjRX6h_dO_yxqSP-C8PTQb6RJJaPD8cah9xVjN7hOzkBi_gjmvMM26m8fvaATtXhREx_sK7dYJrDJFppWRx3p1Z4O42aMxQLvUo7zJlvqxWc8tJfly-dn3Vc2q867oYcqzjAaGSW1ipHSRPqKLS4vygjToYHmZVry74D0tvUDAVbYWKeK6kGsTDVLaN8oeEl-xmWdntDJw0fTQyILJaGxqvWQaRUnFZD5IqRWoyoZX17OLlVys87Uxdutqe9lj7YHpMIQOwsaPYacSqn7BkirOG0r6RpFUQCmw4StaPVYujhnmqtQjfN7oRb6rL4NMFQ_mp2S-yuhfgr9hmtJkBiN8QezQ8UrMpdfUeg7ez3ZBlfHz1ERlbdKoqxwN2egwbmfF_uo1DPdxzrF3Ptyz61rmddVXQPXERQuqdZW034UxiXLAxA8pjhSUrB0v3U_VpHtPzcEph4oQF7RcYbh9P_jHigZ4yaHNB3MEaMS5r4iAGuXa57T82Ahhy3RcXM7o_x2TVDw_C06cwAl5iyC6Dp4vlcPyAF5DUNpwZ7hT5O-6MNORs1e-Jp3t7Won4y7Yh0aQr_q5ddtslFvBB7nEgeu9-9pOYCx3ek4kRDurhisiQhDhtt1gm2sjVd4mYBQ4xfpwJe4knXyy6mO","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.41999998688697815}],"awards":[{"id":"https://openalex.org/G2260150374","display_name":null,"funder_award_id":"R15 GM126446","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G3142616622","display_name":"Detecting and characterizing circular RNAs using high-throughput sequencing data","funder_award_id":"1r15gm126446-01","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3861825698","display_name":null,"funder_award_id":"P20GM103436","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G716542426","display_name":"KY INBRE NOSI Supplement: Identification of Personalized Treatment Targets in Pregnant and Postpartum Women","funder_award_id":"3p20gm103436-24s1","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2954519497.pdf","grobid_xml":"https://content.openalex.org/works/W2954519497.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W1501531009","https://openalex.org/W1964551999","https://openalex.org/W1975909559","https://openalex.org/W1981726010","https://openalex.org/W2015947713","https://openalex.org/W2019230794","https://openalex.org/W2051615060","https://openalex.org/W2058835062","https://openalex.org/W2064165694","https://openalex.org/W2087377443","https://openalex.org/W2089302970","https://openalex.org/W2095705004","https://openalex.org/W2095799789","https://openalex.org/W2108206849","https://openalex.org/W2113525941","https://openalex.org/W2124050695","https://openalex.org/W2128983843","https://openalex.org/W2137691989","https://openalex.org/W2141831115","https://openalex.org/W2338225753","https://openalex.org/W2433743436","https://openalex.org/W2600581473","https://openalex.org/W2601436215","https://openalex.org/W2605112026","https://openalex.org/W2736280136","https://openalex.org/W2755267339","https://openalex.org/W6674330103"],"related_works":["https://openalex.org/W3028919671","https://openalex.org/W2024248021","https://openalex.org/W4323652392","https://openalex.org/W4401192968","https://openalex.org/W3168973927","https://openalex.org/W3030028889","https://openalex.org/W2058984380","https://openalex.org/W1988125422","https://openalex.org/W3038088324","https://openalex.org/W2900182103"],"abstract_inverted_index":{"MOTIVATION:":[0],"Over":[1],"the":[2,19,44,92,114,126,133,142,182,220],"past":[3],"two":[4],"decades,":[5],"a":[6,30,117,173,213],"circular":[7,47,59,83,103,129,137,159],"form":[8],"of":[9,21,46,58,111,116,128,136,144,209],"RNA":[10,60,160],"(circular":[11],"RNA),":[12],"produced":[13],"through":[14],"alternative":[15],"splicing,":[16],"has":[17],"become":[18],"focus":[20],"scientific":[22],"studies":[23],"due":[24,108],"to":[25,51,109,141,157],"its":[26,36],"major":[27],"role":[28],"as":[29],"microRNA":[31],"(miRNA)":[32],"activity":[33],"modulator":[34],"and":[35,55,77,81,120,172],"association":[37],"with":[38],"various":[39],"diseases":[40],"including":[41],"cancer.":[42],"Therefore,":[43,113],"detection":[45],"RNAs":[48,69,80,84,89,104],"is":[49,139,195],"vital":[50],"understanding":[52],"their":[53],"biogenesis":[54],"purpose.":[56],"Prediction":[57],"can":[61],"be":[62],"achieved":[63],"in":[64,217],"three":[65],"steps:":[66],"distinguishing":[67,102],"non-coding":[68,79,88],"from":[70,85,105,161],"protein":[71],"coding":[72],"gene":[73],"transcripts,":[74],"separating":[75],"short":[76],"long":[78,87],"predicting":[82],"other":[86,106,162,221],"(lncRNAs).":[90],"However,":[91],"available":[93,232],"tools":[94,201],"are":[95,188,231],"less":[96],"than":[97,199],"80":[98],"percent":[99,215],"accurate":[100,119],"for":[101,125],"lncRNAs":[107],"difficulty":[110],"classification.":[112],"availability":[115],"more":[118],"fast":[121],"machine":[122],"learning":[123,154],"method":[124],"identification":[127],"RNAs,":[130],"which":[131],"considers":[132],"specific":[134],"features":[135],"RNA,":[138],"essential":[140],"development":[143],"systematic":[145],"annotation.":[146],"RESULTS:":[147],"Here":[148],"we":[149],"present":[150],"an":[151,166,206],"End-to-End":[152],"deep":[153],"framework,":[155],"circDeep,":[156],"classify":[158],"lncRNA.":[163],"circDeep":[164,194],"fuses":[165],"RCM":[167],"descriptor,":[168],"ACNN-BLSTM":[169],"sequence":[170],"descriptor":[171,175],"conservation":[174],"into":[176],"high":[177],"level":[178,208],"abstraction":[179],"descriptors,":[180],"where":[181],"shared":[183],"representations":[184],"across":[185],"different":[186],"modalities":[187],"integrated.":[189],"The":[190],"experiments":[191],"show":[192],"that":[193],"not":[196],"only":[197],"faster":[198],"existing":[200],"but":[202],"also":[203],"performs":[204],"at":[205,233],"unprecedented":[207],"accuracy":[210,218],"by":[211],"achieving":[212],"12":[214],"increase":[216],"over":[219],"tools.":[222],"AVAILABILITY":[223],"AND":[224],"IMPLEMENTATION:":[225],"https://github.com/UofLBioinformatics/circDeep.":[226],"SUPPLEMENTARY":[227],"INFORMATION:":[228],"Supplementary":[229],"data":[230],"Bioinformatics":[234],"online.":[235]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":22},{"year":2023,"cited_by_count":18},{"year":2022,"cited_by_count":13},{"year":2021,"cited_by_count":18},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":1}],"updated_date":"2026-08-08T01:25:22.217667","created_date":"2025-10-10T00:00:00"}
