{"id":"https://openalex.org/W2912368193","doi":"https://doi.org/10.1093/bioinformatics/btz531","title":"Simultaneous prediction of multiple outcomes using revised stacking algorithms","display_name":"Simultaneous prediction of multiple outcomes using revised stacking algorithms","publication_year":2019,"publication_date":"2019-06-28","ids":{"openalex":"https://openalex.org/W2912368193","doi":"https://doi.org/10.1093/bioinformatics/btz531","mag":"2912368193","pmid":"https://pubmed.ncbi.nlm.nih.gov/31263871"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz531","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz531","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/1/65/31813835/btz531.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/1/65/31813835/btz531.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103347049","display_name":"Li Xing","orcid":"https://orcid.org/0000-0002-4186-7909"},"institutions":[{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Li Xing","raw_affiliation_strings":["Department of Mathematics and Statistics, University of Saskatchewan , Saskatoon, SK S7N 5E6, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Statistics, University of Saskatchewan , Saskatoon, SK S7N 5E6, Canada","institution_ids":["https://openalex.org/I32625721"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085426335","display_name":"Mary Lesperance","orcid":"https://orcid.org/0000-0001-8613-1068"},"institutions":[{"id":"https://openalex.org/I212119943","display_name":"University of Victoria","ror":"https://ror.org/04s5mat29","country_code":"CA","type":"education","lineage":["https://openalex.org/I212119943"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Mary L Lesperance","raw_affiliation_strings":["Department of Mathematics and Statistics, University of Victoria , Victoria, BC V8W 2Y2, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Statistics, University of Victoria , Victoria, BC V8W 2Y2, Canada","institution_ids":["https://openalex.org/I212119943"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090281546","display_name":"Xuekui Zhang","orcid":"https://orcid.org/0000-0003-4728-2343"},"institutions":[{"id":"https://openalex.org/I212119943","display_name":"University of Victoria","ror":"https://ror.org/04s5mat29","country_code":"CA","type":"education","lineage":["https://openalex.org/I212119943"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Xuekui Zhang","raw_affiliation_strings":["Department of Mathematics and Statistics, University of Victoria , Victoria, BC V8W 2Y2, Canada"],"raw_orcid":"https://orcid.org/0000-0003-4728-2343","affiliations":[{"raw_affiliation_string":"Department of Mathematics and Statistics, University of Victoria , Victoria, BC V8W 2Y2, Canada","institution_ids":["https://openalex.org/I212119943"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5090281546"],"corresponding_institution_ids":["https://openalex.org/I212119943"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.2722,"has_fulltext":false,"cited_by_count":30,"citation_normalized_percentile":{"value":0.87705175,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"36","issue":"1","first_page":"65","last_page":"72"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10526","display_name":"HIV/AIDS drug development and treatment","score":0.33899998664855957,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10526","display_name":"HIV/AIDS drug development and treatment","score":0.33899998664855957,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.25450000166893005,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11655","display_name":"HIV-related health complications and treatments","score":0.06889999657869339,"subfield":{"id":"https://openalex.org/subfields/2711","display_name":"Emergency Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/stacking","display_name":"Stacking","score":0.663945198059082},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6410856246948242},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5781072378158569},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.06889721751213074}],"concepts":[{"id":"https://openalex.org/C33347731","wikidata":"https://www.wikidata.org/wiki/Q285210","display_name":"Stacking","level":2,"score":0.663945198059082},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6410856246948242},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5781072378158569},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.06889721751213074},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":true},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":true},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":true},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D024882","descriptor_name":"Drug Resistance, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D024882","descriptor_name":"Drug Resistance, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D024882","descriptor_name":"Drug Resistance, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btz531","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz531","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/1/65/31813835/btz531.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31263871","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31263871","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:arXiv.org:1901.10153","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1901.10153","pdf_url":"https://arxiv.org/pdf/1901.10153","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz531","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz531","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/1/65/31813835/btz531.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.8100000023841858}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320994","display_name":"Canada Research Chairs","ror":"https://ror.org/0517h6h17"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W28412257","https://openalex.org/W1594031697","https://openalex.org/W1983404596","https://openalex.org/W1999954155","https://openalex.org/W2063159959","https://openalex.org/W2063978378","https://openalex.org/W2097360283","https://openalex.org/W2104551758","https://openalex.org/W2117812871","https://openalex.org/W2128685318","https://openalex.org/W2131060185","https://openalex.org/W2133013156","https://openalex.org/W2136431383","https://openalex.org/W2145378985","https://openalex.org/W2162888803","https://openalex.org/W2508295414","https://openalex.org/W2913340405","https://openalex.org/W2919115771","https://openalex.org/W3104240813","https://openalex.org/W4238277127","https://openalex.org/W4294541781","https://openalex.org/W4301264738","https://openalex.org/W6679564466"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2035329725","https://openalex.org/W4376641153","https://openalex.org/W2070875936","https://openalex.org/W4250391473","https://openalex.org/W3045075405","https://openalex.org/W4302292679","https://openalex.org/W4241625287"],"abstract_inverted_index":{"MOTIVATION:":[0],"HIV":[1,50],"is":[2,62,120,158],"difficult":[3],"to":[4,20,44,56,63,107],"treat":[5],"because":[6],"its":[7],"virus":[8],"mutates":[9],"at":[10,177],"a":[11,65,97],"high":[12],"rate":[13],"and":[14,28],"mutated":[15],"viruses":[16,86],"easily":[17],"develop":[18],"resistance":[19,76],"existing":[21],"drugs.":[22],"If":[23],"the":[24,58,75,121,162],"relationships":[25],"between":[26],"mutations":[27],"drug":[29],"resistances":[30],"can":[31,38,129,166],"be":[32,39,130,167],"determined":[33],"from":[34,83],"historical":[35],"data,":[36],"patients":[37],"provided":[40],"personalized":[41],"treatment":[42],"according":[43],"their":[45],"own":[46],"mutation":[47,81],"information.":[48],"The":[49,112],"Drug":[51],"Resistance":[52],"Database":[53],"was":[54],"built":[55],"investigate":[57],"relationships.":[59],"Our":[60],"goal":[61],"build":[64],"model":[66],"using":[67,80,132],"data":[68,174],"in":[69],"this":[70],"database,":[71],"which":[72,100,124],"simultaneously":[73],"predicts":[74],"of":[77,85,96,116],"multiple":[78,104],"drugs":[79],"information":[82,102],"sequences":[84],"for":[87],"any":[88,133],"new":[89],"patient.":[90],"RESULTS:":[91],"We":[92],"propose":[93],"two":[94],"variations":[95],"stacking":[98],"algorithm":[99],"borrow":[101],"among":[103],"prediction":[105,110,127,135,150],"tasks":[106],"improve":[108],"multivariate":[109,126,149],"performance.":[111],"most":[113],"attractive":[114],"feature":[115],"our":[117,143],"proposed":[118,144],"methods":[119,145],"flexibility":[122],"with":[123],"complex":[125],"models":[128],"constructed":[131],"univariate":[134],"models.":[136],"Using":[137],"cross-validation":[138],"studies,":[139],"we":[140],"show":[141],"that":[142],"outperform":[146],"other":[147],"popular":[148],"methods.":[151],"AVAILABILITY":[152],"AND":[153],"IMPLEMENTATION:":[154],"An":[155],"R":[156,164],"package":[157],"being":[159],"developed.":[160],"In":[161],"meantime,":[163],"code":[165],"requested":[168],"by":[169],"email.":[170],"SUPPLEMENTARY":[171],"INFORMATION:":[172],"Supplementary":[173],"are":[175],"available":[176],"Bioinformatics":[178],"online.":[179]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":3}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
