{"id":"https://openalex.org/W2955610336","doi":"https://doi.org/10.1093/bioinformatics/btz530","title":"MiTPeptideDB: a proteogenomic resource for the discovery of novel peptides","display_name":"MiTPeptideDB: a proteogenomic resource for the discovery of novel peptides","publication_year":2019,"publication_date":"2019-06-25","ids":{"openalex":"https://openalex.org/W2955610336","doi":"https://doi.org/10.1093/bioinformatics/btz530","mag":"2955610336","pmid":"https://pubmed.ncbi.nlm.nih.gov/31243428"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz530","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz530","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043296656","display_name":"Elizabeth Guruceaga","orcid":"https://orcid.org/0000-0003-0547-681X"},"institutions":[{"id":"https://openalex.org/I88155538","display_name":"Universidad de Navarra","ror":"https://ror.org/02rxc7m23","country_code":"ES","type":"education","lineage":["https://openalex.org/I88155538"]},{"id":"https://openalex.org/I4210112085","display_name":"Navarre Institute of Health Research","ror":"https://ror.org/023d5h353","country_code":"ES","type":"education","lineage":["https://openalex.org/I4210112085"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Elizabeth Guruceaga","raw_affiliation_strings":["Bioinformatics Platform, Center for Applied Medical Research, University of Navarra , Pamplona 31008, Spain","IdiSNA, Navarra Institute for Health Research , Pamplona 31008, Spain"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Platform, Center for Applied Medical Research, University of Navarra , Pamplona 31008, Spain","institution_ids":["https://openalex.org/I88155538"]},{"raw_affiliation_string":"IdiSNA, Navarra Institute for Health Research , Pamplona 31008, Spain","institution_ids":["https://openalex.org/I4210112085"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077885679","display_name":"Alba Gar\u00edn-Muga","orcid":"https://orcid.org/0000-0002-7160-1191"},"institutions":[{"id":"https://openalex.org/I4210100188","display_name":"Biogipuzkoa Health Research Institute","ror":"https://ror.org/01a2wsa50","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210100188"]},{"id":"https://openalex.org/I4210092551","display_name":"Vicomtech","ror":"https://ror.org/0023sah13","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210092551"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Alba Garin-Muga","raw_affiliation_strings":["Biodonostia Health Research Institute , (Bioengineering Area), eHealth Group, San Sebastian 20014, Spain","eHealth and Biomedical Applications Department , Vicomtech, San Sebastian 20009, Spain"],"affiliations":[{"raw_affiliation_string":"Biodonostia Health Research Institute , (Bioengineering Area), eHealth Group, San Sebastian 20014, Spain","institution_ids":["https://openalex.org/I4210100188"]},{"raw_affiliation_string":"eHealth and Biomedical Applications Department , Vicomtech, San Sebastian 20009, Spain","institution_ids":["https://openalex.org/I4210092551"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076844152","display_name":"V\u00edctor Segura","orcid":"https://orcid.org/0000-0002-7740-6290"},"institutions":[{"id":"https://openalex.org/I4210112085","display_name":"Navarre Institute of Health Research","ror":"https://ror.org/023d5h353","country_code":"ES","type":"education","lineage":["https://openalex.org/I4210112085"]},{"id":"https://openalex.org/I88155538","display_name":"Universidad de Navarra","ror":"https://ror.org/02rxc7m23","country_code":"ES","type":"education","lineage":["https://openalex.org/I88155538"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Victor Segura","raw_affiliation_strings":["Bioinformatics Platform, Center for Applied Medical Research, University of Navarra , Pamplona 31008, Spain","IdiSNA, Navarra Institute for Health Research , Pamplona 31008, Spain"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Platform, Center for Applied Medical Research, University of Navarra , Pamplona 31008, Spain","institution_ids":["https://openalex.org/I88155538"]},{"raw_affiliation_string":"IdiSNA, Navarra Institute for Health Research , Pamplona 31008, Spain","institution_ids":["https://openalex.org/I4210112085"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5076844152"],"corresponding_institution_ids":["https://openalex.org/I4210112085","https://openalex.org/I88155538"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.5142,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.64508697,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"36","issue":"1","first_page":"205","last_page":"211"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/proteogenomics","display_name":"Proteogenomics","score":0.9622411727905273},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6639377474784851},{"id":"https://openalex.org/keywords/shotgun-proteomics","display_name":"Shotgun proteomics","score":0.5860925912857056},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5832316279411316},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.5644977688789368},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.5431725978851318},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.4904443919658661},{"id":"https://openalex.org/keywords/shotgun","display_name":"Shotgun","score":0.4138386845588684},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2725965976715088},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.24760380387306213},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2305135428905487},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.22575083374977112},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.2230674922466278},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.2151479423046112},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.0984049141407013}],"concepts":[{"id":"https://openalex.org/C145741570","wikidata":"https://www.wikidata.org/wiki/Q7251534","display_name":"Proteogenomics","level":5,"score":0.9622411727905273},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6639377474784851},{"id":"https://openalex.org/C68289359","wikidata":"https://www.wikidata.org/wiki/Q7502514","display_name":"Shotgun proteomics","level":4,"score":0.5860925912857056},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5832316279411316},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.5644977688789368},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.5431725978851318},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.4904443919658661},{"id":"https://openalex.org/C2781434637","wikidata":"https://www.wikidata.org/wiki/Q486396","display_name":"Shotgun","level":3,"score":0.4138386845588684},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2725965976715088},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.24760380387306213},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2305135428905487},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.22575083374977112},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.2230674922466278},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.2151479423046112},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0984049141407013}],"mesh":[{"descriptor_ui":"D000071696","descriptor_name":"Proteogenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000071696","descriptor_name":"Proteogenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000071696","descriptor_name":"Proteogenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btz530","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz530","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31243428","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31243428","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6060655799","display_name":null,"funder_award_id":"DPI2015-68982-R","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"}],"funders":[{"id":"https://openalex.org/F4320321837","display_name":"Ministerio de Econom\u00eda y Competitividad","ror":"https://ror.org/034900433"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":35,"referenced_works":["https://openalex.org/W1975721281","https://openalex.org/W2026433130","https://openalex.org/W2029919331","https://openalex.org/W2031095666","https://openalex.org/W2032853611","https://openalex.org/W2056499061","https://openalex.org/W2060769471","https://openalex.org/W2069860553","https://openalex.org/W2080993908","https://openalex.org/W2087481305","https://openalex.org/W2096460732","https://openalex.org/W2102329829","https://openalex.org/W2107578201","https://openalex.org/W2129148077","https://openalex.org/W2129883957","https://openalex.org/W2129897014","https://openalex.org/W2131807022","https://openalex.org/W2131856634","https://openalex.org/W2139292879","https://openalex.org/W2144154273","https://openalex.org/W2155553629","https://openalex.org/W2160697532","https://openalex.org/W2416950133","https://openalex.org/W2470397061","https://openalex.org/W2510167837","https://openalex.org/W2524875520","https://openalex.org/W2564717375","https://openalex.org/W2734798616","https://openalex.org/W2760180188","https://openalex.org/W2766574082","https://openalex.org/W2770089238","https://openalex.org/W2784716916","https://openalex.org/W2807248405","https://openalex.org/W2951162249","https://openalex.org/W6683019749"],"related_works":["https://openalex.org/W2036789867","https://openalex.org/W4299663967","https://openalex.org/W2371475667","https://openalex.org/W2971480178","https://openalex.org/W2046727518","https://openalex.org/W1998648829","https://openalex.org/W2121165269","https://openalex.org/W2160904896","https://openalex.org/W4236949517","https://openalex.org/W2898142535"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":4},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":1}],"updated_date":"2026-03-08T08:50:53.379069","created_date":"2025-10-10T00:00:00"}
