{"id":"https://openalex.org/W2955736552","doi":"https://doi.org/10.1093/bioinformatics/btz524","title":"Sub-dominant principal components inform new vaccine targets for HIV Gag","display_name":"Sub-dominant principal components inform new vaccine targets for HIV Gag","publication_year":2019,"publication_date":"2019-06-26","ids":{"openalex":"https://openalex.org/W2955736552","doi":"https://doi.org/10.1093/bioinformatics/btz524","mag":"2955736552","pmid":"https://pubmed.ncbi.nlm.nih.gov/31250884"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz524","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz524","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pure.qub.ac.uk/en/publications/60b47456-4922-48f2-94cf-adb93431d112","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010676220","display_name":"Syed Faraz Ahmed","orcid":"https://orcid.org/0000-0002-6086-0307"},"institutions":[{"id":"https://openalex.org/I200769079","display_name":"Hong Kong University of Science and Technology","ror":"https://ror.org/00q4vv597","country_code":"HK","type":"education","lineage":["https://openalex.org/I200769079"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Syed Faraz Ahmed","raw_affiliation_strings":["Department of Electronic and Computer Engineering, The Hong Kong University of Science and Technology , Hong Kong, China"],"affiliations":[{"raw_affiliation_string":"Department of Electronic and Computer Engineering, The Hong Kong University of Science and Technology , Hong Kong, China","institution_ids":["https://openalex.org/I200769079","https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004347609","display_name":"Ahmed Abdul Quadeer","orcid":"https://orcid.org/0000-0002-5295-9067"},"institutions":[{"id":"https://openalex.org/I200769079","display_name":"Hong Kong University of Science and Technology","ror":"https://ror.org/00q4vv597","country_code":"HK","type":"education","lineage":["https://openalex.org/I200769079"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Ahmed A Quadeer","raw_affiliation_strings":["Department of Electronic and Computer Engineering, The Hong Kong University of Science and Technology , Hong Kong, China"],"affiliations":[{"raw_affiliation_string":"Department of Electronic and Computer Engineering, The Hong Kong University of Science and Technology , Hong Kong, China","institution_ids":["https://openalex.org/I200769079","https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031301324","display_name":"David Morales\u2010Jim\u00e9nez","orcid":"https://orcid.org/0000-0002-2141-7185"},"institutions":[{"id":"https://openalex.org/I126231945","display_name":"Queen's University Belfast","ror":"https://ror.org/00hswnk62","country_code":"GB","type":"education","lineage":["https://openalex.org/I126231945"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"David Morales-Jimenez","raw_affiliation_strings":["Institute of Electronics, Communications and Information Technology , Queen\u2019s University Belfast, Belfast, UK"],"affiliations":[{"raw_affiliation_string":"Institute of Electronics, Communications and Information Technology , Queen\u2019s University Belfast, Belfast, UK","institution_ids":["https://openalex.org/I126231945"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091126453","display_name":"Matthew R. McKay","orcid":"https://orcid.org/0000-0002-8086-2545"},"institutions":[{"id":"https://openalex.org/I200769079","display_name":"Hong Kong University of Science and Technology","ror":"https://ror.org/00q4vv597","country_code":"HK","type":"education","lineage":["https://openalex.org/I200769079"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":true,"raw_author_name":"Matthew R McKay","raw_affiliation_strings":["Department of Chemical and Biological Engineering, The Hong Kong University of Science and Technology , Hong Kong, China","Department of Electronic and Computer Engineering, The Hong Kong University of Science and Technology , Hong Kong, China"],"affiliations":[{"raw_affiliation_string":"Department of Chemical and Biological Engineering, The Hong Kong University of Science and Technology , Hong Kong, China","institution_ids":["https://openalex.org/I200769079"]},{"raw_affiliation_string":"Department of Electronic and Computer Engineering, The Hong Kong University of Science and Technology , Hong Kong, China","institution_ids":["https://openalex.org/I200769079","https://openalex.org/I889458895"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5091126453"],"corresponding_institution_ids":["https://openalex.org/I200769079","https://openalex.org/I889458895"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.6246,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.81864732,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"35","issue":"20","first_page":"3884","last_page":"3889"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9358999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6122908592224121},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5862693190574646},{"id":"https://openalex.org/keywords/group-specific-antigen","display_name":"Group-specific antigen","score":0.5268104076385498},{"id":"https://openalex.org/keywords/human-immunodeficiency-virus","display_name":"Human immunodeficiency virus (HIV)","score":0.5203982591629028},{"id":"https://openalex.org/keywords/hiv-vaccine","display_name":"HIV vaccine","score":0.4948398470878601},{"id":"https://openalex.org/keywords/principal","display_name":"Principal (computer security)","score":0.4683040380477905},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.4578366279602051},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.45185697078704834},{"id":"https://openalex.org/keywords/immune-escape","display_name":"Immune escape","score":0.4365197718143463},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.42816731333732605},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.35515373945236206},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.3004239797592163},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.26206135749816895}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6122908592224121},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5862693190574646},{"id":"https://openalex.org/C6881719","wikidata":"https://www.wikidata.org/wiki/Q5611048","display_name":"Group-specific antigen","level":3,"score":0.5268104076385498},{"id":"https://openalex.org/C3013748606","wikidata":"https://www.wikidata.org/wiki/Q15787","display_name":"Human immunodeficiency virus (HIV)","level":2,"score":0.5203982591629028},{"id":"https://openalex.org/C2780195530","wikidata":"https://www.wikidata.org/wiki/Q1479804","display_name":"HIV vaccine","level":4,"score":0.4948398470878601},{"id":"https://openalex.org/C144559511","wikidata":"https://www.wikidata.org/wiki/Q2986279","display_name":"Principal (computer security)","level":2,"score":0.4683040380477905},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.4578366279602051},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.45185697078704834},{"id":"https://openalex.org/C3018558359","wikidata":"https://www.wikidata.org/wiki/Q1660157","display_name":"Immune escape","level":3,"score":0.4365197718143463},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.42816731333732605},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.35515373945236206},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.3004239797592163},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.26206135749816895},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C2778190748","wikidata":"https://www.wikidata.org/wiki/Q7907956","display_name":"Vaccine trial","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016915","descriptor_name":"AIDS Vaccines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016915","descriptor_name":"AIDS Vaccines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016915","descriptor_name":"AIDS Vaccines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054301","descriptor_name":"gag Gene Products, Human Immunodeficiency Virus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054301","descriptor_name":"gag Gene Products, Human Immunodeficiency Virus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054301","descriptor_name":"gag Gene Products, Human Immunodeficiency Virus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btz524","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz524","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31250884","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31250884","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pure.qub.ac.uk/portal:publications/60b47456-4922-48f2-94cf-adb93431d112","is_oa":true,"landing_page_url":"https://pure.qub.ac.uk/en/publications/60b47456-4922-48f2-94cf-adb93431d112","pdf_url":null,"source":{"id":"https://openalex.org/S4306402319","display_name":"Research Portal (Queen's University Belfast)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I126231945","host_organization_name":"Queen's University Belfast","host_organization_lineage":["https://openalex.org/I126231945"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Ahmed, S F, Quadeer, A A, Morales-Jimenez, D & McKay, M R 2019, 'Sub-dominant principal components inform new vaccine targets for HIV Gag', Bioinformatics, vol. 35, no. 20, pp. 3884\u20133889. https://doi.org/10.1093/bioinformatics/btz524","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:repository.ust.hk:1783.1-97812","is_oa":false,"landing_page_url":"http://repository.ust.hk/ir/Record/1783.1-97812","pdf_url":null,"source":{"id":"https://openalex.org/S4306401796","display_name":"Rare & Special e-Zone (The Hong Kong University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I200769079","host_organization_name":"Hong Kong University of Science and Technology","host_organization_lineage":["https://openalex.org/I200769079"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"pmh:oai:pure.qub.ac.uk/portal:publications/60b47456-4922-48f2-94cf-adb93431d112","is_oa":true,"landing_page_url":"https://pure.qub.ac.uk/en/publications/60b47456-4922-48f2-94cf-adb93431d112","pdf_url":null,"source":{"id":"https://openalex.org/S4306402319","display_name":"Research Portal (Queen's University Belfast)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I126231945","host_organization_name":"Queen's University Belfast","host_organization_lineage":["https://openalex.org/I126231945"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Ahmed, S F, Quadeer, A A, Morales-Jimenez, D & McKay, M R 2019, 'Sub-dominant principal components inform new vaccine targets for HIV Gag', Bioinformatics, vol. 35, no. 20, pp. 3884\u20133889. https://doi.org/10.1093/bioinformatics/btz524","raw_type":"info:eu-repo/semantics/publishedVersion"},"sustainable_development_goals":[{"score":0.8100000023841858,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W1572583106","https://openalex.org/W1964022123","https://openalex.org/W2015999075","https://openalex.org/W2017052897","https://openalex.org/W2034509782","https://openalex.org/W2037918327","https://openalex.org/W2039324191","https://openalex.org/W2070991222","https://openalex.org/W2084131702","https://openalex.org/W2092572492","https://openalex.org/W2099182602","https://openalex.org/W2105813980","https://openalex.org/W2108823152","https://openalex.org/W2109130469","https://openalex.org/W2117091532","https://openalex.org/W2125038904","https://openalex.org/W2130710252","https://openalex.org/W2142608370","https://openalex.org/W2151457629","https://openalex.org/W2158238436","https://openalex.org/W2299230832","https://openalex.org/W2402027820","https://openalex.org/W2412028600","https://openalex.org/W2517950264","https://openalex.org/W2748845569","https://openalex.org/W2798874307","https://openalex.org/W2949706399"],"related_works":["https://openalex.org/W2046765700","https://openalex.org/W262455470","https://openalex.org/W4242899858","https://openalex.org/W4384345686","https://openalex.org/W2145834781","https://openalex.org/W2357937784","https://openalex.org/W2547618384","https://openalex.org/W2577782152","https://openalex.org/W4240746485","https://openalex.org/W4290975583"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":7}],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2025-10-10T00:00:00"}
