{"id":"https://openalex.org/W2952054550","doi":"https://doi.org/10.1093/bioinformatics/btz507","title":"DepLogo: visualizing sequence dependencies in R","display_name":"DepLogo: visualizing sequence dependencies in R","publication_year":2019,"publication_date":"2019-06-13","ids":{"openalex":"https://openalex.org/W2952054550","doi":"https://doi.org/10.1093/bioinformatics/btz507","mag":"2952054550","pmid":"https://pubmed.ncbi.nlm.nih.gov/31225867"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz507","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz507","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/22/4812/30706947/btz507.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/22/4812/30706947/btz507.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004883555","display_name":"Jan Grau","orcid":"https://orcid.org/0000-0003-2081-6405"},"institutions":[{"id":"https://openalex.org/I68956291","display_name":"Martin Luther University Halle-Wittenberg","ror":"https://ror.org/05gqaka33","country_code":"DE","type":"education","lineage":["https://openalex.org/I68956291"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Jan Grau","raw_affiliation_strings":["Institute of Computer Science, Martin Luther University Halle-Wittenberg , Halle (Saale), Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, Martin Luther University Halle-Wittenberg , Halle (Saale), Germany","institution_ids":["https://openalex.org/I68956291"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013106204","display_name":"Martin Nettling","orcid":null},"institutions":[{"id":"https://openalex.org/I68956291","display_name":"Martin Luther University Halle-Wittenberg","ror":"https://ror.org/05gqaka33","country_code":"DE","type":"education","lineage":["https://openalex.org/I68956291"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin Nettling","raw_affiliation_strings":["Institute of Computer Science, Martin Luther University Halle-Wittenberg , Halle (Saale), Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, Martin Luther University Halle-Wittenberg , Halle (Saale), Germany","institution_ids":["https://openalex.org/I68956291"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043314247","display_name":"Jens Keilwagen","orcid":"https://orcid.org/0000-0002-6792-7076"},"institutions":[{"id":"https://openalex.org/I1326965316","display_name":"Julius K\u00fchn-Institut","ror":"https://ror.org/022d5qt08","country_code":"DE","type":"government","lineage":["https://openalex.org/I1326965316","https://openalex.org/I2801963157"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jens Keilwagen","raw_affiliation_strings":["Institute for Biosafety in Plant Biotechnology, Julius K\u00fchn-Institut (JKI) , Quedlinburg, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Biosafety in Plant Biotechnology, Julius K\u00fchn-Institut (JKI) , Quedlinburg, Germany","institution_ids":["https://openalex.org/I1326965316"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5004883555"],"corresponding_institution_ids":["https://openalex.org/I68956291"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.4262,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.61430846,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"35","issue":"22","first_page":"4812","last_page":"4814"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9900000095367432,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7336596846580505},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6873306035995483},{"id":"https://openalex.org/keywords/dependency","display_name":"Dependency (UML)","score":0.6611684560775757},{"id":"https://openalex.org/keywords/logos-bible-software","display_name":"Logos Bible Software","score":0.5597389936447144},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5587596893310547},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.5423020720481873},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5136032104492188},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.48916175961494446},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.4238550662994385},{"id":"https://openalex.org/keywords/partition","display_name":"Partition (number theory)","score":0.4221889078617096},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.41693228483200073},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3869091272354126},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.35896795988082886},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3104495704174042},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.23057511448860168},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.15978938341140747},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.15846216678619385},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.11364990472793579},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09513291716575623},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08674877882003784}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7336596846580505},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6873306035995483},{"id":"https://openalex.org/C19768560","wikidata":"https://www.wikidata.org/wiki/Q320727","display_name":"Dependency (UML)","level":2,"score":0.6611684560775757},{"id":"https://openalex.org/C150506046","wikidata":"https://www.wikidata.org/wiki/Q6667822","display_name":"Logos Bible Software","level":2,"score":0.5597389936447144},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5587596893310547},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.5423020720481873},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5136032104492188},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.48916175961494446},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.4238550662994385},{"id":"https://openalex.org/C42812","wikidata":"https://www.wikidata.org/wiki/Q1082910","display_name":"Partition (number theory)","level":2,"score":0.4221889078617096},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.41693228483200073},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3869091272354126},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35896795988082886},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3104495704174042},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.23057511448860168},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.15978938341140747},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.15846216678619385},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.11364990472793579},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09513291716575623},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08674877882003784},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056510","descriptor_name":"Position-Specific Scoring Matrices","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056510","descriptor_name":"Position-Specific Scoring Matrices","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056510","descriptor_name":"Position-Specific Scoring Matrices","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btz507","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz507","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/22/4812/30706947/btz507.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31225867","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31225867","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz507","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz507","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/22/4812/30706947/btz507.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2952054550.pdf","grobid_xml":"https://content.openalex.org/works/W2952054550.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W1768880427","https://openalex.org/W2029201460","https://openalex.org/W2041877620","https://openalex.org/W2057000344","https://openalex.org/W2065419951","https://openalex.org/W2169636286","https://openalex.org/W2411366054","https://openalex.org/W2413160504","https://openalex.org/W2561988220","https://openalex.org/W2766848373","https://openalex.org/W2792896230","https://openalex.org/W2898402099","https://openalex.org/W2912430686","https://openalex.org/W2949303725"],"related_works":["https://openalex.org/W4281571433","https://openalex.org/W2805881374","https://openalex.org/W2378314888","https://openalex.org/W2486890119","https://openalex.org/W4281263537","https://openalex.org/W2356483005","https://openalex.org/W34664821","https://openalex.org/W4284960968","https://openalex.org/W4212962697","https://openalex.org/W4220668561"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}