{"id":"https://openalex.org/W2952191365","doi":"https://doi.org/10.1093/bioinformatics/btz485","title":"SIGN: similarity identification in gene expression","display_name":"SIGN: similarity identification in gene expression","publication_year":2019,"publication_date":"2019-06-10","ids":{"openalex":"https://openalex.org/W2952191365","doi":"https://doi.org/10.1093/bioinformatics/btz485","mag":"2952191365","pmid":"https://pubmed.ncbi.nlm.nih.gov/31198954"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz485","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz485","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6853666","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011534913","display_name":"Seyed Ali Madani Tonekaboni","orcid":null},"institutions":[{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Seyed Ali Madani Tonekaboni","raw_affiliation_strings":["Department of Medical Biophysics, University of Toronto , Toronto, ON M5G 1L7, Canada","Princess Margaret Cancer Centre, University of Toronto , Toronto, ON M5G 1L7, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Medical Biophysics, University of Toronto , Toronto, ON M5G 1L7, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Princess Margaret Cancer Centre, University of Toronto , Toronto, ON M5G 1L7, Canada","institution_ids":["https://openalex.org/I2802654988","https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065095260","display_name":"Venkata Manem","orcid":"https://orcid.org/0000-0003-1427-2819"},"institutions":[{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I4210135357","display_name":"Institut Universitaire de Cardiologie et de Pneumologie de Qu\u00e9bec","ror":"https://ror.org/03gf7z214","country_code":"CA","type":"education","lineage":["https://openalex.org/I4210135357"]},{"id":"https://openalex.org/I43406934","display_name":"Universit\u00e9 Laval","ror":"https://ror.org/04sjchr03","country_code":"CA","type":"education","lineage":["https://openalex.org/I43406934"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Venkata Satya Kumar Manem","raw_affiliation_strings":["Department of Medical Biophysics, University of Toronto , Toronto, ON M5G 1L7, Canada","Institut Universitaire de Cardiologie et de Pneumologie de Qu\u00e9bec, Universit\u00e9 Laval , QC G1V 4G5, Canada","Princess Margaret Cancer Centre, University of Toronto , Toronto, ON M5G 1L7, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Medical Biophysics, University of Toronto , Toronto, ON M5G 1L7, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Institut Universitaire de Cardiologie et de Pneumologie de Qu\u00e9bec, Universit\u00e9 Laval , QC G1V 4G5, Canada","institution_ids":["https://openalex.org/I4210135357","https://openalex.org/I43406934"]},{"raw_affiliation_string":"Princess Margaret Cancer Centre, University of Toronto , Toronto, ON M5G 1L7, Canada","institution_ids":["https://openalex.org/I2802654988","https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090035556","display_name":"Nehm\u00e9 El-Hachem","orcid":"https://orcid.org/0000-0002-5778-5342"},"institutions":[{"id":"https://openalex.org/I4210158752","display_name":"Montreal Clinical Research Institute","ror":"https://ror.org/05m8pzq90","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210158752","https://openalex.org/I70931966"]},{"id":"https://openalex.org/I70931966","display_name":"Universit\u00e9 de Montr\u00e9al","ror":"https://ror.org/0161xgx34","country_code":"CA","type":"education","lineage":["https://openalex.org/I70931966"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Nehme El-Hachem","raw_affiliation_strings":["Department of Medicine, University of Montreal , Montr\u00e9al, QC, Canada","Integrative Systems Biology, Institut de Recherches Cliniques de Montr\u00e9al , Montr\u00e9al, QC, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Medicine, University of Montreal , Montr\u00e9al, QC, Canada","institution_ids":["https://openalex.org/I70931966"]},{"raw_affiliation_string":"Integrative Systems Biology, Institut de Recherches Cliniques de Montr\u00e9al , Montr\u00e9al, QC, Canada","institution_ids":["https://openalex.org/I4210158752"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010487226","display_name":"Benjamin Haibe\u2010Kains","orcid":"https://orcid.org/0000-0002-7684-0079"},"institutions":[{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I4210090991","display_name":"Institute of Cancer Research","ror":"https://ror.org/00dpztj76","country_code":"CA","type":"facility","lineage":["https://openalex.org/I176337269","https://openalex.org/I4210090991"]},{"id":"https://openalex.org/I112260969","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54","country_code":"CA","type":"funder","lineage":["https://openalex.org/I112260969"]},{"id":"https://openalex.org/I4210127509","display_name":"Vector Institute","ror":"https://ror.org/03kqdja62","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210127509"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Benjamin Haibe-Kains","raw_affiliation_strings":["Department of Computer Science, University of Toronto , Toronto, ON M5T 3A1, Canada","Department of Medical Biophysics, University of Toronto , Toronto, ON M5G 1L7, Canada","Ontario Institute of Cancer Research , Toronto, ON M5G 1L7, Canada","Princess Margaret Cancer Centre, University of Toronto , Toronto, ON M5G 1L7, Canada","Vector Institute , Toronto, ON M5G 1L7, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Toronto , Toronto, ON M5T 3A1, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Department of Medical Biophysics, University of Toronto , Toronto, ON M5G 1L7, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Ontario Institute of Cancer Research , Toronto, ON M5G 1L7, Canada","institution_ids":["https://openalex.org/I112260969","https://openalex.org/I4210090991"]},{"raw_affiliation_string":"Princess Margaret Cancer Centre, University of Toronto , Toronto, ON M5G 1L7, Canada","institution_ids":["https://openalex.org/I2802654988","https://openalex.org/I185261750"]},{"raw_affiliation_string":"Vector Institute , Toronto, ON M5G 1L7, Canada","institution_ids":["https://openalex.org/I4210127509"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5011534913"],"corresponding_institution_ids":["https://openalex.org/I185261750","https://openalex.org/I2802654988"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.1705,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.51559945,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"35","issue":"22","first_page":"4830","last_page":"4833"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9869999885559082,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5930590629577637},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5726782083511353},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.5093084573745728},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5087621808052063},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4916258454322815},{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.4579874277114868},{"id":"https://openalex.org/keywords/sign","display_name":"Sign (mathematics)","score":0.44258826971054077},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3742920756340027},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.33898645639419556},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3356444835662842},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3329571783542633},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2926906645298004},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.25687676668167114},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11528247594833374},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.0878291130065918}],"concepts":[{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5930590629577637},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5726782083511353},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.5093084573745728},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5087621808052063},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4916258454322815},{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.4579874277114868},{"id":"https://openalex.org/C139676723","wikidata":"https://www.wikidata.org/wiki/Q1193832","display_name":"Sign (mathematics)","level":2,"score":0.44258826971054077},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3742920756340027},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.33898645639419556},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3356444835662842},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3329571783542633},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2926906645298004},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.25687676668167114},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11528247594833374},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0878291130065918},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btz485","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz485","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31198954","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31198954","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:6853666","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6853666","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:6853666","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6853666","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/10","score":0.5699999928474426,"display_name":"Reduced inequalities"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320311169","display_name":"Cancer Research Society","ror":"https://ror.org/00t38a349"},{"id":"https://openalex.org/F4320313290","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54"},{"id":"https://openalex.org/F4320314607","display_name":"Government of Ontario","ror":"https://ror.org/015pzp858"},{"id":"https://openalex.org/F4320334506","display_name":"Canadian Institutes of Health Research","ror":"https://ror.org/01gavpb45"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W580452769","https://openalex.org/W1975893297","https://openalex.org/W1993396994","https://openalex.org/W2005895632","https://openalex.org/W2010457001","https://openalex.org/W2017479895","https://openalex.org/W2031770999","https://openalex.org/W2044702943","https://openalex.org/W2045362835","https://openalex.org/W2056434314","https://openalex.org/W2075529464","https://openalex.org/W2081781433","https://openalex.org/W2102461795","https://openalex.org/W2116802246","https://openalex.org/W2118413367","https://openalex.org/W2123879591","https://openalex.org/W2124640147","https://openalex.org/W2128360321","https://openalex.org/W2130410032","https://openalex.org/W2132619562","https://openalex.org/W2132893003","https://openalex.org/W2159707944","https://openalex.org/W2163042952","https://openalex.org/W2164222385","https://openalex.org/W2172358623","https://openalex.org/W2506452038","https://openalex.org/W2950286149","https://openalex.org/W4211012491"],"related_works":["https://openalex.org/W3122938442","https://openalex.org/W2025206082","https://openalex.org/W2164424388","https://openalex.org/W2522576680","https://openalex.org/W2039574433","https://openalex.org/W2330714393","https://openalex.org/W2271373788","https://openalex.org/W2093958826","https://openalex.org/W2136335912","https://openalex.org/W130320472"],"abstract_inverted_index":{"An":[0],"open-source":[1],"R":[2],"package":[3],"is":[4],"available":[5],"(https://cran.r-project.org/web/packages/SIGN/).":[6]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2025-11-23T05:10:03.516525","created_date":"2025-10-10T00:00:00"}
