{"id":"https://openalex.org/W2955930170","doi":"https://doi.org/10.1093/bioinformatics/btz481","title":"RAbHIT: R Antibody Haplotype Inference Tool","display_name":"RAbHIT: R Antibody Haplotype Inference Tool","publication_year":2019,"publication_date":"2019-06-04","ids":{"openalex":"https://openalex.org/W2955930170","doi":"https://doi.org/10.1093/bioinformatics/btz481","mag":"2955930170","pmid":"https://pubmed.ncbi.nlm.nih.gov/31173062"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz481","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz481","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/22/4840/30706692/btz481.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/22/4840/30706692/btz481.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053964003","display_name":"Ayelet Peres","orcid":"https://orcid.org/0000-0002-0188-7315"},"institutions":[{"id":"https://openalex.org/I13955877","display_name":"Bar-Ilan University","ror":"https://ror.org/03kgsv495","country_code":"IL","type":"education","lineage":["https://openalex.org/I13955877"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Ayelet Peres","raw_affiliation_strings":["Faculty of Engineering, Bar Ilan University , Ramat Gan 5290002, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Engineering, Bar Ilan University , Ramat Gan 5290002, Israel","institution_ids":["https://openalex.org/I13955877"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032131400","display_name":"Moriah Gidoni","orcid":null},"institutions":[{"id":"https://openalex.org/I13955877","display_name":"Bar-Ilan University","ror":"https://ror.org/03kgsv495","country_code":"IL","type":"education","lineage":["https://openalex.org/I13955877"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Moriah Gidoni","raw_affiliation_strings":["Faculty of Engineering, Bar Ilan University , Ramat Gan 5290002, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Engineering, Bar Ilan University , Ramat Gan 5290002, Israel","institution_ids":["https://openalex.org/I13955877"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046033939","display_name":"Pazit Polak","orcid":"https://orcid.org/0000-0001-8363-0734"},"institutions":[{"id":"https://openalex.org/I13955877","display_name":"Bar-Ilan University","ror":"https://ror.org/03kgsv495","country_code":"IL","type":"education","lineage":["https://openalex.org/I13955877"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Pazit Polak","raw_affiliation_strings":["Faculty of Engineering, Bar Ilan University , Ramat Gan 5290002, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Engineering, Bar Ilan University , Ramat Gan 5290002, Israel","institution_ids":["https://openalex.org/I13955877"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084475280","display_name":"Gur Yaari","orcid":"https://orcid.org/0000-0001-9311-9884"},"institutions":[{"id":"https://openalex.org/I13955877","display_name":"Bar-Ilan University","ror":"https://ror.org/03kgsv495","country_code":"IL","type":"education","lineage":["https://openalex.org/I13955877"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Gur Yaari","raw_affiliation_strings":["Faculty of Engineering, Bar Ilan University , Ramat Gan 5290002, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Engineering, Bar Ilan University , Ramat Gan 5290002, Israel","institution_ids":["https://openalex.org/I13955877"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5084475280"],"corresponding_institution_ids":["https://openalex.org/I13955877"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":4.4965,"has_fulltext":true,"cited_by_count":38,"citation_normalized_percentile":{"value":0.94745316,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"35","issue":"22","first_page":"4840","last_page":"4842"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.35040000081062317,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.35040000081062317,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11660","display_name":"Blood groups and transfusion","score":0.25929999351501465,"subfield":{"id":"https://openalex.org/subfields/2720","display_name":"Hematology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11171","display_name":"Diabetes and associated disorders","score":0.04490000009536743,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/haplotype","display_name":"Haplotype","score":0.8527776598930359},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.7016767263412476},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6532211303710938},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5148676633834839},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5030423998832703},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.47597140073776245},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4268726110458374},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4248705506324768},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.41433894634246826},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3899663984775543},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2244594395160675},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.07284334301948547}],"concepts":[{"id":"https://openalex.org/C197754878","wikidata":"https://www.wikidata.org/wiki/Q80711","display_name":"Haplotype","level":4,"score":0.8527776598930359},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.7016767263412476},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6532211303710938},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5148676633834839},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5030423998832703},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.47597140073776245},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4268726110458374},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4248705506324768},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.41433894634246826},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3899663984775543},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2244594395160675},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.07284334301948547},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btz481","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz481","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/22/4840/30706692/btz481.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31173062","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31173062","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz481","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz481","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/22/4840/30706692/btz481.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G640032994","display_name":null,"funder_award_id":"832/16","funder_id":"https://openalex.org/F4320313643","funder_display_name":"Iowa Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320313643","display_name":"Iowa Science Foundation","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2955930170.pdf","grobid_xml":"https://content.openalex.org/works/W2955930170.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1520434148","https://openalex.org/W1802312377","https://openalex.org/W1967505760","https://openalex.org/W1974596630","https://openalex.org/W2010295342","https://openalex.org/W2029525307","https://openalex.org/W2041309682","https://openalex.org/W2102733876","https://openalex.org/W2105273832","https://openalex.org/W2113392525","https://openalex.org/W2138067488","https://openalex.org/W2175702062","https://openalex.org/W2565989705","https://openalex.org/W2578150941","https://openalex.org/W2604809863","https://openalex.org/W2766414528","https://openalex.org/W2768618120","https://openalex.org/W2912715963","https://openalex.org/W2950234903"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W3146762847","https://openalex.org/W2398263405","https://openalex.org/W2056886854","https://openalex.org/W2025446304","https://openalex.org/W2166354960","https://openalex.org/W2131321814","https://openalex.org/W1888102361","https://openalex.org/W2171251480","https://openalex.org/W1492100763"],"abstract_inverted_index":{"SUMMARY:":[0],"Antibody":[1,78],"haplotype":[2,99],"inference":[3,97],"(chromosomal":[4],"phasing)":[5],"may":[6,104],"have":[7],"clinical":[8],"implications":[9],"for":[10,26,127],"the":[11,22,27,31,39,58],"identification":[12],"of":[13,21,30,41,60,67,98],"genetic":[14],"predispositions":[15],"to":[16,38,48,56,86,107],"diseases.":[17],"Yet,":[18],"our":[19],"knowledge":[20],"genomic":[23],"loci":[24,62],"encoding":[25],"variable":[28],"regions":[29],"antibody":[32],"is":[33,124],"only":[34],"partial,":[35],"mostly":[36],"due":[37],"challenge":[40],"aligning":[42],"short":[43],"reads":[44],"from":[45,109,130],"genome":[46],"sequencing":[47],"these":[49,61],"highly":[50],"repetitive":[51],"loci.":[52],"A":[53],"powerful":[54],"approach":[55],"infer":[57,87],"content":[59],"relies":[63],"on":[64],"analyzing":[65],"repertoires":[66],"rearranged":[68],"V(D)J":[69,88],"sequences.":[70],"We":[71],"present":[72],"here":[73],"RAbHIT,":[74],"an":[75],"R":[76,132],"Haplotype":[77],"Inference":[79],"Tool,":[80],"that":[81],"implements":[82],"a":[83,92],"novel":[84],"algorithm":[85],"haplotypes":[89],"by":[90,115],"adapting":[91],"Bayesian":[93],"framework.":[94],"RAbHIT":[95,123],"offers":[96],"and":[100,111],"gene":[101],"deletions.":[102],"It":[103],"be":[105],"applied":[106],"sequences":[108],"na\u00efve":[110],"non-na\u00efve":[112],"B-cells,":[113],"sequenced":[114],"different":[116],"library":[117],"preparation":[118],"protocols.":[119],"AVAILABILITY":[120],"AND":[121],"IMPLEMENTATION:":[122],"freely":[125],"available":[126,147],"academic":[128],"use":[129],"comprehensive":[131],"archive":[133],"network":[134],"(CRAN)":[135],"(https://cran.r-project.org/web/packages/rabhit/)":[136],"under":[137],"CC":[138],"BY-SA":[139],"4.0":[140],"license.":[141],"SUPPLEMENTARY":[142],"INFORMATION:":[143],"Supplementary":[144],"data":[145],"are":[146],"at":[148],"Bioinformatics":[149],"online.":[150]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
