{"id":"https://openalex.org/W2956286274","doi":"https://doi.org/10.1093/bioinformatics/btz478","title":"P3DOCK: a protein\u2013RNA docking webserver based on template-based and template-free docking","display_name":"P3DOCK: a protein\u2013RNA docking webserver based on template-based and template-free docking","publication_year":2019,"publication_date":"2019-06-04","ids":{"openalex":"https://openalex.org/W2956286274","doi":"https://doi.org/10.1093/bioinformatics/btz478","mag":"2956286274","pmid":"https://pubmed.ncbi.nlm.nih.gov/31173056"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz478","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz478","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/1/96/31813799/btz478.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/1/96/31813799/btz478.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073455841","display_name":"Jinfang Zheng","orcid":"https://orcid.org/0000-0001-5966-7713"},"institutions":[{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinfang Zheng","raw_affiliation_strings":["School of Physics, Huazhong University of Science and Technology , Wuhan, Hubei 430074, China"],"affiliations":[{"raw_affiliation_string":"School of Physics, Huazhong University of Science and Technology , Wuhan, Hubei 430074, China","institution_ids":["https://openalex.org/I47720641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103241824","display_name":"Xu Hong","orcid":"https://orcid.org/0000-0002-6951-7943"},"institutions":[{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xu Hong","raw_affiliation_strings":["School of Physics, Huazhong University of Science and Technology , Wuhan, Hubei 430074, China"],"affiliations":[{"raw_affiliation_string":"School of Physics, Huazhong University of Science and Technology , Wuhan, Hubei 430074, China","institution_ids":["https://openalex.org/I47720641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043110775","display_name":"Juan Xie","orcid":"https://orcid.org/0000-0002-4170-9273"},"institutions":[{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Juan Xie","raw_affiliation_strings":["School of Physics, Huazhong University of Science and Technology , Wuhan, Hubei 430074, China"],"affiliations":[{"raw_affiliation_string":"School of Physics, Huazhong University of Science and Technology , Wuhan, Hubei 430074, China","institution_ids":["https://openalex.org/I47720641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112699834","display_name":"Xiaoxue Tong","orcid":null},"institutions":[{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoxue Tong","raw_affiliation_strings":["School of Physics, Huazhong University of Science and Technology , Wuhan, Hubei 430074, China"],"affiliations":[{"raw_affiliation_string":"School of Physics, Huazhong University of Science and Technology , Wuhan, Hubei 430074, China","institution_ids":["https://openalex.org/I47720641"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101966282","display_name":"Shiyong Liu","orcid":"https://orcid.org/0000-0001-7986-5178"},"institutions":[{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Shiyong Liu","raw_affiliation_strings":["School of Physics, Huazhong University of Science and Technology , Wuhan, Hubei 430074, China"],"affiliations":[{"raw_affiliation_string":"School of Physics, Huazhong University of Science and Technology , Wuhan, Hubei 430074, China","institution_ids":["https://openalex.org/I47720641"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5101966282"],"corresponding_institution_ids":["https://openalex.org/I47720641"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.8566,"has_fulltext":false,"cited_by_count":33,"citation_normalized_percentile":{"value":0.72780809,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"36","issue":"1","first_page":"96","last_page":"103"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.7643486857414246},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6936041116714478},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5200609564781189},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5098275542259216},{"id":"https://openalex.org/keywords/protein\u2013ligand-docking","display_name":"Protein\u2013ligand docking","score":0.46664005517959595},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.40945136547088623},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.34706780314445496},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.33677953481674194},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3223564028739929},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3109663128852844},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.2053106725215912},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.1829526424407959},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.16830956935882568},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12437480688095093},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.09510838985443115},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.08376213908195496}],"concepts":[{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.7643486857414246},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6936041116714478},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5200609564781189},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5098275542259216},{"id":"https://openalex.org/C77319485","wikidata":"https://www.wikidata.org/wiki/Q7251520","display_name":"Protein\u2013ligand docking","level":4,"score":0.46664005517959595},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.40945136547088623},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.34706780314445496},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.33677953481674194},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3223564028739929},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3109663128852844},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.2053106725215912},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.1829526424407959},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.16830956935882568},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12437480688095093},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.09510838985443115},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.08376213908195496},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btz478","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz478","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/1/96/31813799/btz478.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31173056","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31173056","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz478","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz478","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/1/96/31813799/btz478.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1243944574","display_name":null,"funder_award_id":"31100522","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4478565605","display_name":null,"funder_award_id":"2016YXMS017","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2956286274.pdf","grobid_xml":"https://content.openalex.org/works/W2956286274.grobid-xml"},"referenced_works_count":53,"referenced_works":["https://openalex.org/W1508885706","https://openalex.org/W1513606750","https://openalex.org/W1558365920","https://openalex.org/W1921157559","https://openalex.org/W1964167423","https://openalex.org/W1965150339","https://openalex.org/W1994183585","https://openalex.org/W1996423252","https://openalex.org/W1997535872","https://openalex.org/W2000383223","https://openalex.org/W2006704067","https://openalex.org/W2026828265","https://openalex.org/W2030303852","https://openalex.org/W2039063819","https://openalex.org/W2039143660","https://openalex.org/W2041358119","https://openalex.org/W2053758959","https://openalex.org/W2073911195","https://openalex.org/W2075200002","https://openalex.org/W2082667898","https://openalex.org/W2083717115","https://openalex.org/W2097031841","https://openalex.org/W2097270746","https://openalex.org/W2101086441","https://openalex.org/W2102245393","https://openalex.org/W2111387452","https://openalex.org/W2114532236","https://openalex.org/W2124432783","https://openalex.org/W2129279466","https://openalex.org/W2130479394","https://openalex.org/W2140089353","https://openalex.org/W2157991822","https://openalex.org/W2161151688","https://openalex.org/W2161671472","https://openalex.org/W2163614321","https://openalex.org/W2164059036","https://openalex.org/W2170747616","https://openalex.org/W2307041907","https://openalex.org/W2342788749","https://openalex.org/W2506542935","https://openalex.org/W2521782266","https://openalex.org/W2560643340","https://openalex.org/W2597602671","https://openalex.org/W2611653288","https://openalex.org/W2615136515","https://openalex.org/W2786230719","https://openalex.org/W2883093401","https://openalex.org/W2888311493","https://openalex.org/W2943097297","https://openalex.org/W2952396359","https://openalex.org/W4211196614","https://openalex.org/W4296588184","https://openalex.org/W6630721513"],"related_works":["https://openalex.org/W1581147483","https://openalex.org/W2329052364","https://openalex.org/W4310018788","https://openalex.org/W2417162538","https://openalex.org/W2162967120","https://openalex.org/W1567411871","https://openalex.org/W2301625241","https://openalex.org/W2072180710","https://openalex.org/W2131900949","https://openalex.org/W2140522686"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3}],"updated_date":"2026-03-27T14:29:43.386196","created_date":"2025-10-10T00:00:00"}
