{"id":"https://openalex.org/W2948878452","doi":"https://doi.org/10.1093/bioinformatics/btz451","title":"MTTFsite: cross-cell type TF binding site prediction by using multi-task learning","display_name":"MTTFsite: cross-cell type TF binding site prediction by using multi-task learning","publication_year":2019,"publication_date":"2019-05-30","ids":{"openalex":"https://openalex.org/W2948878452","doi":"https://doi.org/10.1093/bioinformatics/btz451","mag":"2948878452","pmid":"https://pubmed.ncbi.nlm.nih.gov/31161194"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz451","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz451","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/24/5067/31797884/btz451.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/24/5067/31797884/btz451.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5048243922","display_name":"Jiyun Zhou","orcid":"https://orcid.org/0000-0002-2145-2976"},"institutions":[{"id":"https://openalex.org/I14243506","display_name":"Hong Kong Polytechnic University","ror":"https://ror.org/0030zas98","country_code":"HK","type":"education","lineage":["https://openalex.org/I14243506"]},{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN","HK"],"is_corresponding":false,"raw_author_name":"Jiyun Zhou","raw_affiliation_strings":["Department of Computing, The Hong Kong Polytechnic University , Hung Hom, Hong Kong","School of Computer Science and Technology, Harbin Institute of Technology Shenzhen Graduate School , Shenzhen, China"],"affiliations":[{"raw_affiliation_string":"Department of Computing, The Hong Kong Polytechnic University , Hung Hom, Hong Kong","institution_ids":["https://openalex.org/I14243506"]},{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology Shenzhen Graduate School , Shenzhen, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016391596","display_name":"Qin Lu","orcid":"https://orcid.org/0000-0002-9092-2476"},"institutions":[{"id":"https://openalex.org/I14243506","display_name":"Hong Kong Polytechnic University","ror":"https://ror.org/0030zas98","country_code":"HK","type":"education","lineage":["https://openalex.org/I14243506"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Qin Lu","raw_affiliation_strings":["Department of Computing, The Hong Kong Polytechnic University , Hung Hom, Hong Kong"],"affiliations":[{"raw_affiliation_string":"Department of Computing, The Hong Kong Polytechnic University , Hung Hom, Hong Kong","institution_ids":["https://openalex.org/I14243506"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062168574","display_name":"Lin Gui","orcid":"https://orcid.org/0000-0002-8054-9524"},"institutions":[{"id":"https://openalex.org/I39555362","display_name":"University of Warwick","ror":"https://ror.org/01a77tt86","country_code":"GB","type":"education","lineage":["https://openalex.org/I39555362"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Lin Gui","raw_affiliation_strings":["Department of Computer Science, University of Warwick , Coventry CV4 4AL, UK"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Warwick , Coventry CV4 4AL, UK","institution_ids":["https://openalex.org/I39555362"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026719663","display_name":"Ruifeng Xu","orcid":"https://orcid.org/0000-0002-4009-5679"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ruifeng Xu","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology Shenzhen Graduate School , Shenzhen, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology Shenzhen Graduate School , Shenzhen, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001981431","display_name":"Yunfei Long","orcid":"https://orcid.org/0000-0002-4407-578X"},"institutions":[{"id":"https://openalex.org/I14243506","display_name":"Hong Kong Polytechnic University","ror":"https://ror.org/0030zas98","country_code":"HK","type":"education","lineage":["https://openalex.org/I14243506"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Yunfei Long","raw_affiliation_strings":["Department of Computing, The Hong Kong Polytechnic University , Hung Hom, Hong Kong"],"affiliations":[{"raw_affiliation_string":"Department of Computing, The Hong Kong Polytechnic University , Hung Hom, Hong Kong","institution_ids":["https://openalex.org/I14243506"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100608721","display_name":"Hongpeng Wang","orcid":"https://orcid.org/0000-0001-8108-2674"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongpeng Wang","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology Shenzhen Graduate School , Shenzhen, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology Shenzhen Graduate School , Shenzhen, China","institution_ids":["https://openalex.org/I204983213"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5026719663"],"corresponding_institution_ids":["https://openalex.org/I204983213"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.7983,"has_fulltext":false,"cited_by_count":29,"citation_normalized_percentile":{"value":0.85500204,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"35","issue":"24","first_page":"5067","last_page":"5077"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7188297510147095},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.6331021785736084},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5436943173408508},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5188823342323303},{"id":"https://openalex.org/keywords/baseline","display_name":"Baseline (sea)","score":0.4805915057659149},{"id":"https://openalex.org/keywords/cell-type","display_name":"Cell type","score":0.47994497418403625},{"id":"https://openalex.org/keywords/labeled-data","display_name":"Labeled data","score":0.4640364646911621},{"id":"https://openalex.org/keywords/supervised-learning","display_name":"Supervised learning","score":0.434981107711792},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3586910367012024},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.34048992395401},{"id":"https://openalex.org/keywords/cell","display_name":"Cell","score":0.2594245672225952},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.18070709705352783},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10941284894943237},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08091670274734497}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7188297510147095},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.6331021785736084},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5436943173408508},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5188823342323303},{"id":"https://openalex.org/C12725497","wikidata":"https://www.wikidata.org/wiki/Q810247","display_name":"Baseline (sea)","level":2,"score":0.4805915057659149},{"id":"https://openalex.org/C189014844","wikidata":"https://www.wikidata.org/wiki/Q189118","display_name":"Cell type","level":3,"score":0.47994497418403625},{"id":"https://openalex.org/C2776145971","wikidata":"https://www.wikidata.org/wiki/Q30673951","display_name":"Labeled data","level":2,"score":0.4640364646911621},{"id":"https://openalex.org/C136389625","wikidata":"https://www.wikidata.org/wiki/Q334384","display_name":"Supervised learning","level":3,"score":0.434981107711792},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3586910367012024},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.34048992395401},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.2594245672225952},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.18070709705352783},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10941284894943237},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08091670274734497},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C505870484","wikidata":"https://www.wikidata.org/wiki/Q180538","display_name":"Fishery","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btz451","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz451","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/24/5067/31797884/btz451.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31161194","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31161194","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:wrap.warwick.ac.uk:117679","is_oa":true,"landing_page_url":null,"pdf_url":"http://wrap.warwick.ac.uk/117679/1/WRAP-MTTFsite-cross-cell-type-TF-binding-site-prediction-using-multi-task-learning-Gui-2019.pdf","source":{"id":"https://openalex.org/S4306400665","display_name":"Warwick Research Archive Portal (University of Warwick)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I39555362","host_organization_name":"University of Warwick","host_organization_lineage":["https://openalex.org/I39555362"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:5915403","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6954652","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:ira.lib.polyu.edu.hk:10397/82245","is_oa":true,"landing_page_url":"http://hdl.handle.net/10397/82245","pdf_url":null,"source":{"id":"https://openalex.org/S4306400205","display_name":"PolyU Institutional Research Archive (Hong Kong Polytechnic University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I14243506","host_organization_name":"Hong Kong Polytechnic University","host_organization_lineage":["https://openalex.org/I14243506"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal/Magazine Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz451","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz451","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/24/5067/31797884/btz451.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.47999998927116394,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G3110231696","display_name":null,"funder_award_id":"U1636103","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4165806713","display_name":null,"funder_award_id":"61632011","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6114143109","display_name":null,"funder_award_id":"61876053","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2948878452.pdf","grobid_xml":"https://content.openalex.org/works/W2948878452.grobid-xml"},"referenced_works_count":54,"referenced_works":["https://openalex.org/W1019830208","https://openalex.org/W1515749105","https://openalex.org/W1900337607","https://openalex.org/W1987122345","https://openalex.org/W1990893875","https://openalex.org/W1994122295","https://openalex.org/W2012114217","https://openalex.org/W2026882865","https://openalex.org/W2029201460","https://openalex.org/W2069520341","https://openalex.org/W2071753700","https://openalex.org/W2076154138","https://openalex.org/W2077132193","https://openalex.org/W2078034709","https://openalex.org/W2080498142","https://openalex.org/W2092390808","https://openalex.org/W2095718954","https://openalex.org/W2101025813","https://openalex.org/W2102473929","https://openalex.org/W2110738405","https://openalex.org/W2118628540","https://openalex.org/W2121607820","https://openalex.org/W2132955708","https://openalex.org/W2134957137","https://openalex.org/W2135030836","https://openalex.org/W2135722286","https://openalex.org/W2137154596","https://openalex.org/W2146393977","https://openalex.org/W2146502635","https://openalex.org/W2148056478","https://openalex.org/W2149769193","https://openalex.org/W2166429927","https://openalex.org/W2168249156","https://openalex.org/W2171252918","https://openalex.org/W2198606573","https://openalex.org/W2234479961","https://openalex.org/W2247766769","https://openalex.org/W2268267797","https://openalex.org/W2336509392","https://openalex.org/W2401121789","https://openalex.org/W2433743436","https://openalex.org/W2479945688","https://openalex.org/W2509668036","https://openalex.org/W2560311853","https://openalex.org/W2604214647","https://openalex.org/W2624928917","https://openalex.org/W2795830831","https://openalex.org/W2911224643","https://openalex.org/W2911964244","https://openalex.org/W2963457143","https://openalex.org/W4245023496","https://openalex.org/W4248318091","https://openalex.org/W6681435938","https://openalex.org/W6685199251"],"related_works":["https://openalex.org/W3162567751","https://openalex.org/W4285260836","https://openalex.org/W4221088574","https://openalex.org/W3094076422","https://openalex.org/W3046775127","https://openalex.org/W4220686584","https://openalex.org/W4319309271","https://openalex.org/W2971361125","https://openalex.org/W3091943846","https://openalex.org/W2953328427"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":4}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}