{"id":"https://openalex.org/W2948001905","doi":"https://doi.org/10.1093/bioinformatics/btz446","title":"Path2Surv: Pathway/gene set-based survival analysis using multiple kernel learning","display_name":"Path2Surv: Pathway/gene set-based survival analysis using multiple kernel learning","publication_year":2019,"publication_date":"2019-05-25","ids":{"openalex":"https://openalex.org/W2948001905","doi":"https://doi.org/10.1093/bioinformatics/btz446","mag":"2948001905","pmid":"https://pubmed.ncbi.nlm.nih.gov/31147687"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz446","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz446","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059905552","display_name":"Onur Dereli","orcid":"https://orcid.org/0000-0002-2759-2793"},"institutions":[{"id":"https://openalex.org/I67581229","display_name":"Istanbul University","ror":"https://ror.org/03a5qrr21","country_code":"TR","type":"education","lineage":["https://openalex.org/I67581229"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Onur Dereli","raw_affiliation_strings":["Graduate School of Sciences and Engineering , \u0130stanbul 34450, Turkey"],"affiliations":[{"raw_affiliation_string":"Graduate School of Sciences and Engineering , \u0130stanbul 34450, Turkey","institution_ids":["https://openalex.org/I67581229"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089831764","display_name":"Ceyda O\u01e7uz","orcid":"https://orcid.org/0000-0003-0994-1758"},"institutions":[{"id":"https://openalex.org/I4210105167","display_name":"College of Industrial Engineering","ror":"https://ror.org/01j157486","country_code":"SI","type":"education","lineage":["https://openalex.org/I4210105167"]}],"countries":["SI"],"is_corresponding":false,"raw_author_name":"Ceyda O\u011fuz","raw_affiliation_strings":["Department of Industrial Engineering, College of Engineering , \u0130stanbul 34450, Turkey"],"affiliations":[{"raw_affiliation_string":"Department of Industrial Engineering, College of Engineering , \u0130stanbul 34450, Turkey","institution_ids":["https://openalex.org/I4210105167"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5019778058","display_name":"Mehmet G\u00f6nen","orcid":"https://orcid.org/0000-0002-2483-075X"},"institutions":[{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]},{"id":"https://openalex.org/I4210105167","display_name":"College of Industrial Engineering","ror":"https://ror.org/01j157486","country_code":"SI","type":"education","lineage":["https://openalex.org/I4210105167"]},{"id":"https://openalex.org/I1351752","display_name":"Ko\u00e7 University","ror":"https://ror.org/00jzwgz36","country_code":"TR","type":"education","lineage":["https://openalex.org/I1351752"]}],"countries":["SI","TR","US"],"is_corresponding":true,"raw_author_name":"Mehmet G\u00f6nen","raw_affiliation_strings":["Department of Biomedical Engineering, School of Medicine, Oregon Health & Science University , Portland, OR 97239, USA","Department of Industrial Engineering, College of Engineering , \u0130stanbul 34450, Turkey","School of Medicine, Koc\u00b8 University , \u0130stanbul 34450, Turkey","Department of Biomedical Engineering, School of Medicine, Oregon Health & Science University, Portland, OR 97239, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, School of Medicine, Oregon Health & Science University , Portland, OR 97239, USA","institution_ids":["https://openalex.org/I165690674"]},{"raw_affiliation_string":"Department of Industrial Engineering, College of Engineering , \u0130stanbul 34450, Turkey","institution_ids":["https://openalex.org/I4210105167"]},{"raw_affiliation_string":"School of Medicine, Koc\u00b8 University , \u0130stanbul 34450, Turkey","institution_ids":["https://openalex.org/I1351752"]},{"raw_affiliation_string":"Department of Biomedical Engineering, School of Medicine, Oregon Health & Science University, Portland, OR 97239, USA","institution_ids":["https://openalex.org/I165690674"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5019778058"],"corresponding_institution_ids":["https://openalex.org/I1351752","https://openalex.org/I165690674","https://openalex.org/I4210105167"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.8589,"has_fulltext":false,"cited_by_count":34,"citation_normalized_percentile":{"value":0.72695798,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":100},"biblio":{"volume":"35","issue":"24","first_page":"5137","last_page":"5145"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.758247971534729},{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.7570676803588867},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6208279728889465},{"id":"https://openalex.org/keywords/kernel","display_name":"Kernel (algebra)","score":0.5841256976127625},{"id":"https://openalex.org/keywords/replicate","display_name":"Replicate","score":0.5793852806091309},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.5793774127960205},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.564980685710907},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5576074719429016},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5474002957344055},{"id":"https://openalex.org/keywords/survival-analysis","display_name":"Survival analysis","score":0.4959941804409027},{"id":"https://openalex.org/keywords/data-set","display_name":"Data set","score":0.45016393065452576},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.41160184144973755},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3315655589103699},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3200925588607788},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2211015820503235},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.13109195232391357},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.12182646989822388},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09017577767372131}],"concepts":[{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.758247971534729},{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.7570676803588867},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6208279728889465},{"id":"https://openalex.org/C74193536","wikidata":"https://www.wikidata.org/wiki/Q574844","display_name":"Kernel (algebra)","level":2,"score":0.5841256976127625},{"id":"https://openalex.org/C2781162219","wikidata":"https://www.wikidata.org/wiki/Q26250693","display_name":"Replicate","level":2,"score":0.5793852806091309},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.5793774127960205},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.564980685710907},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5576074719429016},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5474002957344055},{"id":"https://openalex.org/C10515644","wikidata":"https://www.wikidata.org/wiki/Q543310","display_name":"Survival analysis","level":2,"score":0.4959941804409027},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.45016393065452576},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.41160184144973755},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3315655589103699},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3200925588607788},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2211015820503235},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.13109195232391357},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.12182646989822388},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09017577767372131},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016019","descriptor_name":"Survival Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016019","descriptor_name":"Survival Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016019","descriptor_name":"Survival Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btz446","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz446","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31147687","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31147687","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5299999713897705,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G145402959","display_name":null,"funder_award_id":"T\u00dcBA-GEB\u0130P","funder_id":"https://openalex.org/F4320322628","funder_display_name":"T\u00fcrkiye Bilimler Akademisi"},{"id":"https://openalex.org/G5295076861","display_name":null,"funder_award_id":"EEEAG 117E181","funder_id":"https://openalex.org/F4320322626","funder_display_name":"T\u00fcrkiye Bilimsel ve Teknolojik Ara\u015ft\u0131rma Kurumu"}],"funders":[{"id":"https://openalex.org/F4320309233","display_name":"Oregon Health and Science University","ror":"https://ror.org/009avj582"},{"id":"https://openalex.org/F4320322626","display_name":"T\u00fcrkiye Bilimsel ve Teknolojik Ara\u015ft\u0131rma Kurumu","ror":"https://ror.org/04w9kkr77"},{"id":"https://openalex.org/F4320322628","display_name":"T\u00fcrkiye Bilimler Akademisi","ror":"https://ror.org/00aqt9352"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W1560724230","https://openalex.org/W1580788756","https://openalex.org/W1731081199","https://openalex.org/W1965801346","https://openalex.org/W1985516812","https://openalex.org/W1995551949","https://openalex.org/W2004655916","https://openalex.org/W2025720061","https://openalex.org/W2045007082","https://openalex.org/W2052825782","https://openalex.org/W2086883878","https://openalex.org/W2096766502","https://openalex.org/W2108933868","https://openalex.org/W2109743529","https://openalex.org/W2110146199","https://openalex.org/W2116209708","https://openalex.org/W2119821739","https://openalex.org/W2130448611","https://openalex.org/W2136883754","https://openalex.org/W2140881839","https://openalex.org/W2144603192","https://openalex.org/W2146934995","https://openalex.org/W2169745262","https://openalex.org/W2214074259","https://openalex.org/W2528259371","https://openalex.org/W2611463039","https://openalex.org/W2762295733","https://openalex.org/W2797482815","https://openalex.org/W2801430416","https://openalex.org/W2911964244","https://openalex.org/W2950517073","https://openalex.org/W3099478002","https://openalex.org/W3144619878","https://openalex.org/W3147894994","https://openalex.org/W4239510810","https://openalex.org/W6728030545"],"related_works":["https://openalex.org/W4254851101","https://openalex.org/W3171007296","https://openalex.org/W22115721","https://openalex.org/W2321234655","https://openalex.org/W2065444835","https://openalex.org/W4394550905","https://openalex.org/W2952773340","https://openalex.org/W2470062578","https://openalex.org/W2981861370","https://openalex.org/W4229503580"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":21},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":4}],"updated_date":"2026-04-18T07:56:08.524223","created_date":"2025-10-10T00:00:00"}
