{"id":"https://openalex.org/W2949949116","doi":"https://doi.org/10.1093/bioinformatics/btz427","title":"ACME: pan-specific peptide\u2013MHC class I binding prediction through attention-based deep neural networks","display_name":"ACME: pan-specific peptide\u2013MHC class I binding prediction through attention-based deep neural networks","publication_year":2019,"publication_date":"2019-05-19","ids":{"openalex":"https://openalex.org/W2949949116","doi":"https://doi.org/10.1093/bioinformatics/btz427","mag":"2949949116","pmid":"https://pubmed.ncbi.nlm.nih.gov/31120490"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz427","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz427","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1093/bioinformatics/btz427","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102783031","display_name":"Yan Hu","orcid":"https://orcid.org/0000-0001-7208-1952"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yan Hu","raw_affiliation_strings":["School of Life Sciences, Tsinghua University , Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Sciences, Tsinghua University , Beijing, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100400478","display_name":"Ziqiang Wang","orcid":"https://orcid.org/0000-0002-4676-3447"},"institutions":[{"id":"https://openalex.org/I4210164332","display_name":"Shenzhen Second People's Hospital","ror":"https://ror.org/05c74bq69","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210164332"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ziqiang Wang","raw_affiliation_strings":["Department of Urology, Shenzhen Second People\u2019s Hospital, The First Affiliated Hospital of Shenzhen University , International Cancer Center, Shenzhen University School of Medicine, Shenzhen, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Urology, Shenzhen Second People\u2019s Hospital, The First Affiliated Hospital of Shenzhen University , International Cancer Center, Shenzhen University School of Medicine, Shenzhen, China","institution_ids":["https://openalex.org/I4210164332"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046702976","display_name":"Hailin Hu","orcid":"https://orcid.org/0000-0002-5768-4437"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hailin Hu","raw_affiliation_strings":["School of Medicine, Tsinghua University , Beijing, China"],"raw_orcid":"https://orcid.org/0000-0002-5768-4437","affiliations":[{"raw_affiliation_string":"School of Medicine, Tsinghua University , Beijing, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100689470","display_name":"Fang Wan","orcid":"https://orcid.org/0000-0003-1647-3278"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fangping Wan","raw_affiliation_strings":["Institute for Interdisciplinary Information Sciences, Tsinghua University , Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Interdisciplinary Information Sciences, Tsinghua University , Beijing, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100443725","display_name":"Lin Chen","orcid":"https://orcid.org/0000-0002-2958-6012"},"institutions":[{"id":"https://openalex.org/I2799736854","display_name":"Nanjing Institute of Technology","ror":"https://ror.org/00n6txq60","country_code":"CN","type":"education","lineage":["https://openalex.org/I2799736854"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lin Chen","raw_affiliation_strings":["Turing AI Institute of Nanjing , Nanjing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Turing AI Institute of Nanjing , Nanjing, China","institution_ids":["https://openalex.org/I2799736854"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101973531","display_name":"Yuanpeng Xiong","orcid":"https://orcid.org/0000-0002-0393-6184"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuanpeng Xiong","raw_affiliation_strings":["Bioinformatics Division, BNRIST/Department of Computer Science and Technology , Tsinghua University, Beijing, China","Department of Computer Science and Technology, Tsinghua University , Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Division, BNRIST/Department of Computer Science and Technology , Tsinghua University, Beijing, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Department of Computer Science and Technology, Tsinghua University , Beijing, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100360045","display_name":"Xiaoxia Wang","orcid":"https://orcid.org/0000-0003-1888-9154"},"institutions":[{"id":"https://openalex.org/I4210164332","display_name":"Shenzhen Second People's Hospital","ror":"https://ror.org/05c74bq69","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210164332"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoxia Wang","raw_affiliation_strings":["Department of Urology, Shenzhen Second People\u2019s Hospital, The First Affiliated Hospital of Shenzhen University , International Cancer Center, Shenzhen University School of Medicine, Shenzhen, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Urology, Shenzhen Second People\u2019s Hospital, The First Affiliated Hospital of Shenzhen University , International Cancer Center, Shenzhen University School of Medicine, Shenzhen, China","institution_ids":["https://openalex.org/I4210164332"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067578751","display_name":"Dan Zhao","orcid":"https://orcid.org/0000-0003-0195-6031"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dan Zhao","raw_affiliation_strings":["Institute for Interdisciplinary Information Sciences, Tsinghua University , Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Interdisciplinary Information Sciences, Tsinghua University , Beijing, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006926548","display_name":"Weiren Huang","orcid":"https://orcid.org/0000-0002-5438-9416"},"institutions":[{"id":"https://openalex.org/I4210164332","display_name":"Shenzhen Second People's Hospital","ror":"https://ror.org/05c74bq69","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210164332"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Weiren Huang","raw_affiliation_strings":["Department of Urology, Shenzhen Second People\u2019s Hospital, The First Affiliated Hospital of Shenzhen University , International Cancer Center, Shenzhen University School of Medicine, Shenzhen, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Urology, Shenzhen Second People\u2019s Hospital, The First Affiliated Hospital of Shenzhen University , International Cancer Center, Shenzhen University School of Medicine, Shenzhen, China","institution_ids":["https://openalex.org/I4210164332"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009826239","display_name":"Jianyang Zeng","orcid":"https://orcid.org/0000-0003-0950-7716"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jianyang Zeng","raw_affiliation_strings":["Institute for Interdisciplinary Information Sciences, Tsinghua University , Beijing, China","MOE Key Laboratory of Bioinformatics, Tsinghua University , Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Interdisciplinary Information Sciences, Tsinghua University , Beijing, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"MOE Key Laboratory of Bioinformatics, Tsinghua University , Beijing, China","institution_ids":["https://openalex.org/I99065089"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5006926548","https://openalex.org/A5009826239"],"corresponding_institution_ids":["https://openalex.org/I4210164332","https://openalex.org/I99065089"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":4.3595,"has_fulltext":false,"cited_by_count":114,"citation_normalized_percentile":{"value":0.95441356,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"35","issue":"23","first_page":"4946","last_page":"4954"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.987500011920929,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.987500011920929,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.007199999876320362,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.0010999999940395355,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/class","display_name":"Class (philosophy)","score":0.6612555980682373},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.6238147020339966},{"id":"https://openalex.org/keywords/mhc-class-i","display_name":"MHC class I","score":0.5889904499053955},{"id":"https://openalex.org/keywords/deep-neural-networks","display_name":"Deep neural networks","score":0.5152971744537354},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5077748894691467},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5023331642150879},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4947218596935272},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.47184327244758606},{"id":"https://openalex.org/keywords/major-histocompatibility-complex","display_name":"Major histocompatibility complex","score":0.43099120259284973},{"id":"https://openalex.org/keywords/mhc-class-ii","display_name":"MHC class II","score":0.42901185154914856},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.351313054561615},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.29590126872062683},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.1531599760055542},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15295404195785522},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.1004437506198883}],"concepts":[{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.6612555980682373},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.6238147020339966},{"id":"https://openalex.org/C170627219","wikidata":"https://www.wikidata.org/wiki/Q13218497","display_name":"MHC class I","level":4,"score":0.5889904499053955},{"id":"https://openalex.org/C2984842247","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep neural networks","level":3,"score":0.5152971744537354},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5077748894691467},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5023331642150879},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4947218596935272},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.47184327244758606},{"id":"https://openalex.org/C207936829","wikidata":"https://www.wikidata.org/wiki/Q423163","display_name":"Major histocompatibility complex","level":3,"score":0.43099120259284973},{"id":"https://openalex.org/C2778814158","wikidata":"https://www.wikidata.org/wiki/Q959350","display_name":"MHC class II","level":4,"score":0.42901185154914856},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.351313054561615},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.29590126872062683},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.1531599760055542},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15295404195785522},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1004437506198883}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001288","descriptor_name":"Attention","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001288","descriptor_name":"Attention","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001288","descriptor_name":"Attention","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btz427","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz427","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31120490","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31120490","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz427","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz427","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.44999998807907104,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G3927232695","display_name":"\u89e3\u6790\u57fa\u56e0\u7ec4\u4e09\u7ef4\u6298\u53e0\u7684\u8ba1\u7b97\u6a21\u578b\u7814\u7a76","funder_award_id":"61872216","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6429079033","display_name":"\u57fa\u4e8e\u751f\u7269\u7f51\u7edc\u7684\u75c5\u8bc1\u7ed3\u5408\u7814\u7a76\u65b9\u6cd5","funder_award_id":"81630103","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G706305440","display_name":null,"funder_award_id":"81772737","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8755943873","display_name":"\u57fa\u4e8e\u7f51\u7edc\u7684\u836f\u7269\uff0d\u9776\u6807\u76f8\u4e92\u4f5c\u7528\u9884\u6d4b\u7684\u6a21\u578b\u7814\u7a76","funder_award_id":"61472205","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":39,"referenced_works":["https://openalex.org/W1522301498","https://openalex.org/W1665214252","https://openalex.org/W2000305183","https://openalex.org/W2007026865","https://openalex.org/W2012523084","https://openalex.org/W2020269034","https://openalex.org/W2026781298","https://openalex.org/W2053707749","https://openalex.org/W2053931156","https://openalex.org/W2082830752","https://openalex.org/W2093201911","https://openalex.org/W2097398162","https://openalex.org/W2110574412","https://openalex.org/W2115613106","https://openalex.org/W2117252247","https://openalex.org/W2125732073","https://openalex.org/W2130642272","https://openalex.org/W2132629607","https://openalex.org/W2133564696","https://openalex.org/W2142739377","https://openalex.org/W2143210482","https://openalex.org/W2146721994","https://openalex.org/W2148146008","https://openalex.org/W2159404298","https://openalex.org/W2168688111","https://openalex.org/W2271914738","https://openalex.org/W2326870000","https://openalex.org/W2552513321","https://openalex.org/W2618586463","https://openalex.org/W2728365508","https://openalex.org/W2757221062","https://openalex.org/W2774113098","https://openalex.org/W2781173963","https://openalex.org/W2953065444","https://openalex.org/W2963347351","https://openalex.org/W2964308564","https://openalex.org/W6637242042","https://openalex.org/W6677119906","https://openalex.org/W6679434410"],"related_works":["https://openalex.org/W1840653008","https://openalex.org/W2977793531","https://openalex.org/W2023967363","https://openalex.org/W1939527068","https://openalex.org/W2154173448","https://openalex.org/W2126139339","https://openalex.org/W2168688111","https://openalex.org/W2070684866","https://openalex.org/W4281625971","https://openalex.org/W4362567252"],"abstract_inverted_index":{"MOTIVATION:":[0],"Prediction":[1],"of":[2,18,24,45,108,189],"peptide":[3],"binding":[4,34,60,70,117,163],"to":[5,38,66,121,129,150],"the":[6,16,22,43,69,89,109,140,162,187],"major":[7],"histocompatibility":[8],"complex":[9],"(MHC)":[10],"plays":[11],"a":[12,62,180],"vital":[13],"role":[14],"in":[15,88],"development":[17],"therapeutic":[19],"vaccines":[20],"for":[21,57,80,186],"treatment":[23],"cancer.":[25],"Algorithms":[26],"with":[27,105,144],"improved":[28],"correlations":[29],"between":[30,72,113,165],"predicted":[31,114],"and":[32,41,74,115,158,167,182],"actual":[33],"affinities":[35,71,118],"are":[36,85,211],"needed":[37],"increase":[39,107],"precision":[40],"reduce":[42],"number":[44],"false":[46],"positive":[47],"predictions.":[48],"RESULTS:":[49],"We":[50],"present":[51],"ACME":[52,97,147,177,197],"(Attention-based":[53],"Convolutional":[54],"neural":[55,142],"networks":[56],"MHC":[58,75,169],"Epitope":[59],"prediction),":[61],"new":[63,82],"pan-specific":[64],"algorithm":[65],"accurately":[67],"predict":[68],"peptides":[73,132,166],"class":[76,191],"I":[77,192],"molecules,":[78],"even":[79],"those":[81],"alleles":[83],"that":[84,96,154,176],"not":[86],"seen":[87],"training":[90],"data.":[91],"Extensive":[92],"tests":[93],"have":[94,174],"demonstrated":[95,175],"can":[98,155,178],"significantly":[99],"outperform":[100],"other":[101],"state-of-the-art":[102],"prediction":[103],"methods":[104],"an":[106,201],"Pearson":[110],"correlation":[111],"coefficient":[112],"measured":[116],"by":[119,138],"up":[120],"23":[122],"percentage":[123],"points.":[124],"In":[125],"addition,":[126],"its":[127],"ability":[128],"identify":[130],"strong-binding":[131],"has":[133],"been":[134],"experimentally":[135],"validated.":[136],"Moreover,":[137],"integrating":[139],"convolutional":[141],"network":[143],"attention":[145],"mechanism,":[146],"is":[148,198],"able":[149],"extract":[151],"interpretable":[152],"patterns":[153],"provide":[156,179],"useful":[157,184],"detailed":[159],"insights":[160],"into":[161],"preferences":[164],"their":[168],"partners.":[170],"All":[171],"these":[172],"results":[173],"powerful":[181],"practically":[183],"tool":[185],"studies":[188],"peptide-MHC":[190],"interactions.":[193],"AVAILABILITY":[194],"AND":[195],"IMPLEMENTATION:":[196],"available":[199,212],"as":[200],"open":[202],"source":[203],"software":[204],"at":[205,213],"https://github.com/HYsxe/ACME.":[206],"SUPPLEMENTARY":[207],"INFORMATION:":[208],"Supplementary":[209],"data":[210],"Bioinformatics":[214],"online.":[215]},"counts_by_year":[{"year":2026,"cited_by_count":8},{"year":2025,"cited_by_count":15},{"year":2024,"cited_by_count":24},{"year":2023,"cited_by_count":20},{"year":2022,"cited_by_count":13},{"year":2021,"cited_by_count":16},{"year":2020,"cited_by_count":14},{"year":2019,"cited_by_count":4}],"updated_date":"2026-06-18T08:10:14.011955","created_date":"2025-10-10T00:00:00"}
