{"id":"https://openalex.org/W2953603616","doi":"https://doi.org/10.1093/bioinformatics/btz423","title":"NRStitcher: non-rigid stitching of terapixel-scale volumetric images","display_name":"NRStitcher: non-rigid stitching of terapixel-scale volumetric images","publication_year":2019,"publication_date":"2019-05-17","ids":{"openalex":"https://openalex.org/W2953603616","doi":"https://doi.org/10.1093/bioinformatics/btz423","mag":"2953603616","pmid":"https://pubmed.ncbi.nlm.nih.gov/31116382"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz423","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz423","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/24/5290/48977846/bioinformatics_35_24_5290.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/24/5290/48977846/bioinformatics_35_24_5290.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057270315","display_name":"Arttu Miettinen","orcid":"https://orcid.org/0000-0003-3132-0544"},"institutions":[{"id":"https://openalex.org/I2802229908","display_name":"Paul Scherrer Institute","ror":"https://ror.org/03eh3y714","country_code":"CH","type":"facility","lineage":["https://openalex.org/I2799323385","https://openalex.org/I2802229908"]},{"id":"https://openalex.org/I4210133377","display_name":"Centre d'Imagerie BioMedicale","ror":"https://ror.org/03fw2bn12","country_code":"CH","type":"facility","lineage":["https://openalex.org/I4210133377"]},{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Arttu Miettinen","raw_affiliation_strings":["Centre d\u2019imagerie biom\u00e9dicale, \u00c9cole polytechnique f\u00e9d\u00e9rale de Lausanne , 1015 Lausanne, Switzerland","Swiss Light Source, Paul Scherrer Institute , 5234 Villigen, Switzerland"],"raw_orcid":"https://orcid.org/0000-0003-3132-0544","affiliations":[{"raw_affiliation_string":"Centre d\u2019imagerie biom\u00e9dicale, \u00c9cole polytechnique f\u00e9d\u00e9rale de Lausanne , 1015 Lausanne, Switzerland","institution_ids":["https://openalex.org/I4210133377","https://openalex.org/I5124864"]},{"raw_affiliation_string":"Swiss Light Source, Paul Scherrer Institute , 5234 Villigen, Switzerland","institution_ids":["https://openalex.org/I2802229908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001634356","display_name":"Ioannis Vogiatzis Oikonomidis","orcid":"https://orcid.org/0000-0003-1344-1545"},"institutions":[{"id":"https://openalex.org/I118564535","display_name":"University of Bern","ror":"https://ror.org/02k7v4d05","country_code":"CH","type":"education","lineage":["https://openalex.org/I118564535"]},{"id":"https://openalex.org/I2802229908","display_name":"Paul Scherrer Institute","ror":"https://ror.org/03eh3y714","country_code":"CH","type":"facility","lineage":["https://openalex.org/I2799323385","https://openalex.org/I2802229908"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Ioannis Vogiatzis Oikonomidis","raw_affiliation_strings":["Institute of Anatomy, University of Bern , 3012 Bern, Switzerland","Swiss Light Source, Paul Scherrer Institute , 5234 Villigen, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Anatomy, University of Bern , 3012 Bern, Switzerland","institution_ids":["https://openalex.org/I118564535"]},{"raw_affiliation_string":"Swiss Light Source, Paul Scherrer Institute , 5234 Villigen, Switzerland","institution_ids":["https://openalex.org/I2802229908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036123914","display_name":"Anne Bonnin","orcid":"https://orcid.org/0000-0001-5537-8682"},"institutions":[{"id":"https://openalex.org/I2802229908","display_name":"Paul Scherrer Institute","ror":"https://ror.org/03eh3y714","country_code":"CH","type":"facility","lineage":["https://openalex.org/I2799323385","https://openalex.org/I2802229908"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Anne Bonnin","raw_affiliation_strings":["Swiss Light Source, Paul Scherrer Institute , 5234 Villigen, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss Light Source, Paul Scherrer Institute , 5234 Villigen, Switzerland","institution_ids":["https://openalex.org/I2802229908"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002647826","display_name":"Marco Stampanoni","orcid":"https://orcid.org/0000-0001-7486-6681"},"institutions":[{"id":"https://openalex.org/I2802229908","display_name":"Paul Scherrer Institute","ror":"https://ror.org/03eh3y714","country_code":"CH","type":"facility","lineage":["https://openalex.org/I2799323385","https://openalex.org/I2802229908"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I4210090941","display_name":"Institute for Biomedical Engineering","ror":"https://ror.org/00baskk38","country_code":"CH","type":"facility","lineage":["https://openalex.org/I202697423","https://openalex.org/I2799323385","https://openalex.org/I35440088","https://openalex.org/I4210090941"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Marco Stampanoni","raw_affiliation_strings":["Institute for Biomedical Engineering, University and ETH Z\u00fcrich , 8092 Z\u00fcrich, Switzerland","Swiss Light Source, Paul Scherrer Institute , 5234 Villigen, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Biomedical Engineering, University and ETH Z\u00fcrich , 8092 Z\u00fcrich, Switzerland","institution_ids":["https://openalex.org/I4210090941","https://openalex.org/I35440088"]},{"raw_affiliation_string":"Swiss Light Source, Paul Scherrer Institute , 5234 Villigen, Switzerland","institution_ids":["https://openalex.org/I2802229908"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5057270315"],"corresponding_institution_ids":["https://openalex.org/I2802229908","https://openalex.org/I4210133377","https://openalex.org/I5124864"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":7.2929,"has_fulltext":true,"cited_by_count":69,"citation_normalized_percentile":{"value":0.96948702,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"35","issue":"24","first_page":"5290","last_page":"5297"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.4244000017642975,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.4244000017642975,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11183","display_name":"Advanced X-ray Imaging Techniques","score":0.20550000667572021,"subfield":{"id":"https://openalex.org/subfields/3108","display_name":"Radiation"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.08309999853372574,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/image-stitching","display_name":"Image stitching","score":0.975461483001709},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7971846461296082},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.7288308143615723},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.6639105081558228},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6062537431716919},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5942323803901672},{"id":"https://openalex.org/keywords/artifact","display_name":"Artifact (error)","score":0.5458897948265076},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4632298946380615},{"id":"https://openalex.org/keywords/sample","display_name":"Sample (material)","score":0.4414199888706207},{"id":"https://openalex.org/keywords/barcode","display_name":"Barcode","score":0.43037763237953186},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.3584964871406555}],"concepts":[{"id":"https://openalex.org/C29081049","wikidata":"https://www.wikidata.org/wiki/Q1364242","display_name":"Image stitching","level":2,"score":0.975461483001709},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7971846461296082},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.7288308143615723},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.6639105081558228},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6062537431716919},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5942323803901672},{"id":"https://openalex.org/C2779010991","wikidata":"https://www.wikidata.org/wiki/Q2720909","display_name":"Artifact (error)","level":2,"score":0.5458897948265076},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4632298946380615},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.4414199888706207},{"id":"https://openalex.org/C2776841711","wikidata":"https://www.wikidata.org/wiki/Q856","display_name":"Barcode","level":2,"score":0.43037763237953186},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.3584964871406555},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014057","descriptor_name":"Tomography, X-Ray Computed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014057","descriptor_name":"Tomography, X-Ray Computed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014057","descriptor_name":"Tomography, X-Ray Computed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016477","descriptor_name":"Artifacts","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016477","descriptor_name":"Artifacts","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016477","descriptor_name":"Artifacts","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/bioinformatics/btz423","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz423","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/24/5290/48977846/bioinformatics_35_24_5290.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31116382","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31116382","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:www.research-collection.ethz.ch:20.500.11850/391774","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.11850/391774","pdf_url":null,"source":{"id":"https://openalex.org/S4306402302","display_name":"Repository for Publications and Research Data (ETH Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I35440088","host_organization_name":"ETH Zurich","host_organization_lineage":["https://openalex.org/I35440088"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics, 35 (24)","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:boris.unibe.ch:137851","is_oa":true,"landing_page_url":"https://boris.unibe.ch/137851/","pdf_url":null,"source":{"id":"https://openalex.org/S4306401747","display_name":"BORIS (University Library Bern)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210103840","host_organization_name":"Nakuru County Council","host_organization_lineage":["https://openalex.org/I4210103840"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Miettinen, Arttu; Vogiatzis Oikonomidis, Ioannis; Bonnin, Anne; Stampanoni, Marco (2019). NRStitcher: Non-rigid stitching of terapixel-scale volumetric images. Bioinformatics, 35(24), pp. 5290-5297. Oxford University Press 10.1093/bioinformatics/btz423 <http://dx.doi.org/10.1093/bioinformatics/btz423>","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:dora:psi_24245","is_oa":true,"landing_page_url":"https://www.dora.lib4ri.ch/psi/islandora/object/psi%3A24245","pdf_url":null,"source":{"id":"https://openalex.org/S4306402574","display_name":"DORA PSI (Paul Scherrer Institute)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2802229908","host_organization_name":"Paul Scherrer Institute","host_organization_lineage":["https://openalex.org/I2802229908"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:infoscience.epfl.ch:274327","is_oa":true,"landing_page_url":"http://infoscience.epfl.ch/record/274327","pdf_url":null,"source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"research article"},{"id":"doi:10.3929/ethz-b-000391774","is_oa":true,"landing_page_url":"https://doi.org/10.3929/ethz-b-000391774","pdf_url":null,"source":{"id":"https://openalex.org/S7407051236","display_name":"ETH Z\u00fcrich Research Collection","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz423","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz423","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/24/5290/48977846/bioinformatics_35_24_5290.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4066315735","display_name":null,"funder_award_id":"CR23I2-135550","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G7847766690","display_name":null,"funder_award_id":"310030-153468","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G8105150848","display_name":null,"funder_award_id":"310030","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8502611986","display_name":"In-vivo study of lung physiology with sub-second X-ray tomographic microscopy","funder_award_id":"135550","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G8690818240","display_name":null,"funder_award_id":"310030","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G880077231","display_name":"How does the 3-dimensional structure of the pulmonary acinus develop and regenerate and which functional consequences does it have?","funder_award_id":"153468","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2953603616.pdf","grobid_xml":"https://content.openalex.org/works/W2953603616.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1963483517","https://openalex.org/W1988888548","https://openalex.org/W2036984232","https://openalex.org/W2037521346","https://openalex.org/W2055056592","https://openalex.org/W2097795807","https://openalex.org/W2102182691","https://openalex.org/W2128689973","https://openalex.org/W2158453800","https://openalex.org/W2195479374","https://openalex.org/W2529099292","https://openalex.org/W2733287843","https://openalex.org/W2765373514","https://openalex.org/W2766746267","https://openalex.org/W2806961427","https://openalex.org/W2888186463","https://openalex.org/W2910779362","https://openalex.org/W6675507917","https://openalex.org/W6745806777"],"related_works":["https://openalex.org/W68020613","https://openalex.org/W1973382465","https://openalex.org/W2256570403","https://openalex.org/W2074156223","https://openalex.org/W2103246366","https://openalex.org/W4255291540","https://openalex.org/W3134240150","https://openalex.org/W2091466534","https://openalex.org/W4391927655","https://openalex.org/W2789551765"],"abstract_inverted_index":{"SUMMARY:":[0],"In":[1],"modern":[2],"microscopy,":[3],"the":[4,36,42,49,54,59,77,91,147],"field":[5],"of":[6,38,90,116],"view":[7],"is":[8,124],"often":[9,27],"increased":[10],"by":[11,53,108],"obtaining":[12],"an":[13,81,168],"image":[14,83,114,141],"mosaic,":[15],"where":[16],"multiple":[17],"sub-images":[18],"are":[19,161],"taken":[20],"side-by-side":[21],"and":[22,79,96,136,157,171],"combined":[23],"post-acquisition.":[24],"Mosaic":[25],"imaging":[26,31],"leads":[28],"to":[29,57,75,100,126,138],"long":[30],"times":[32],"that":[33],"can":[34,97],"increase":[35],"probability":[37],"sample":[39,60],"deformation":[40],"during":[41],"acquisition":[43],"due":[44],"to,":[45],"e.g.":[46],"changes":[47],"in":[48,118,143],"environment,":[50],"damage":[51],"caused":[52],"radiation":[55],"used":[56,99],"probe":[58],"or":[61],"biologically":[62],"induced":[63],"deterioration.":[64],"Here":[65],"we":[66],"propose":[67],"a":[68,110],"technique,":[69],"based":[70],"on":[71],"local":[72],"phase":[73],"correlation,":[74],"detect":[76],"deformations":[78],"construct":[80],"artifact-free":[82,140],"mosaic":[84,115],"from":[85],"deformed":[86],"sub-images.":[87],"The":[88,122,154],"implementation":[89],"method":[92,123],"supports":[93],"distributed":[94],"computing":[95],"be":[98],"generate":[101],"teravoxel-size":[102],"mosaics.":[103],"We":[104],"demonstrate":[105],"its":[106],"capabilities":[107],"assembling":[109],"5.6":[111],"teravoxel":[112],"tomographic":[113],"microvasculature":[117],"whole":[119],"mouse":[120],"brain.":[121],"compared":[125],"existing":[127],"rigid":[128],"stitching":[129,155],"implementations":[130],"designed":[131],"for":[132],"very":[133],"large":[134],"datasets,":[135],"observed":[137],"create":[139],"mosaics":[142],"comparable":[144],"runtime":[145],"with":[146,167],"same":[148],"hardware":[149],"resources.":[150],"AVAILABILITY":[151],"AND":[152],"IMPLEMENTATION:":[153],"software":[156],"C++/Python":[158],"source":[159],"code":[160],"available":[162],"at":[163],"GitHub":[164],"(https://github.com/arttumiettinen/pi2)":[165],"along":[166],"example":[169],"dataset":[170],"user":[172],"instructions.":[173]},"counts_by_year":[{"year":2026,"cited_by_count":8},{"year":2025,"cited_by_count":16},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":14},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":1}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}